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Aliases for RBMXL3 Gene

Aliases for RBMXL3 Gene

  • RNA Binding Motif Protein, X-Linked-Like 3 2 3
  • CXorf55 3 4
  • RNA-Binding Motif Protein, X-Linked-Like-3 3
  • Chromosome X Open Reading Frame 55 2

External Ids for RBMXL3 Gene

Previous HGNC Symbols for RBMXL3 Gene

  • CXorf55

Previous GeneCards Identifiers for RBMXL3 Gene

  • GC0XP114330
  • GC0XP114423
  • GC0XP104008

Summaries for RBMXL3 Gene

GeneCards Summary for RBMXL3 Gene

RBMXL3 (RNA Binding Motif Protein, X-Linked-Like 3) is a Protein Coding gene. Among its related pathways are Spliceosome. GO annotations related to this gene include RNA binding and nucleotide binding. An important paralog of this gene is RBMXL1.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RBMXL3 Gene

Genomics for RBMXL3 Gene

Regulatory Elements for RBMXL3 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for RBMXL3 Gene

115,189,400 bp from pter
115,192,868 bp from pter
3,469 bases
Plus strand

Genomic View for RBMXL3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RBMXL3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RBMXL3 Gene

Proteins for RBMXL3 Gene

  • Protein details for RBMXL3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    RNA-binding motif protein, X-linked-like-3
    Protein Accession:
    Secondary Accessions:
    • B4DXC0

    Protein attributes for RBMXL3 Gene

    1067 amino acids
    Molecular mass:
    114938 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RBMXL3 Gene

Proteomics data for RBMXL3 Gene at MOPED

Post-translational modifications for RBMXL3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RBMXL3 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RBMXL3 Gene

Domains for RBMXL3 Gene

Gene Families for RBMXL3 Gene

  • RBM :RNA binding motif (RRM) containing

Protein Domains for RBMXL3 Gene


Suggested Antigen Peptide Sequences for RBMXL3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Q8N7X1
  • Contains 1 RRM (RNA recognition motif) domain.
genes like me logo Genes that share domains with RBMXL3: view

Function for RBMXL3 Gene

Gene Ontology (GO) - Molecular Function for RBMXL3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000166 nucleotide binding IEA --
GO:0003676 nucleic acid binding --
GO:0003723 RNA binding IEA --
genes like me logo Genes that share ontologies with RBMXL3: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RBMXL3 Gene

Localization for RBMXL3 Gene

Subcellular locations from

Jensen Localization Image for RBMXL3 Gene COMPARTMENTS Subcellular localization image for RBMXL3 gene
Compartment Confidence
nucleus 3

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for RBMXL3 Gene

Pathways for RBMXL3 Gene

SuperPathways for RBMXL3 Gene

Superpath Contained pathways
1 Spliceosome
genes like me logo Genes that share pathways with RBMXL3: view

Pathways by source for RBMXL3 Gene

1 KEGG pathway for RBMXL3 Gene

Interacting Proteins for RBMXL3 Gene

Gene Ontology (GO) - Biological Process for RBMXL3 Gene


Transcripts for RBMXL3 Gene

mRNA/cDNA for RBMXL3 Gene

(2) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:
(2) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RBMXL3 Gene

RNA binding motif protein, X-linked-like 3:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RBMXL3

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for RBMXL3
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RBMXL3 Gene

No ASD Table

Relevant External Links for RBMXL3 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RBMXL3 Gene

mRNA expression in normal human tissues for RBMXL3 Gene

mRNA differential expression in normal tissues according to GTEx for RBMXL3 Gene

This gene is overexpressed in Testis (49.2).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for RBMXL3 Gene

SOURCE GeneReport for Unigene cluster for RBMXL3 Gene Hs.376008

genes like me logo Genes that share expressions with RBMXL3: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for RBMXL3 Gene

Orthologs for RBMXL3 Gene

This gene was present in the common ancestor of animals.

Orthologs for RBMXL3 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia RBMXL3 36
  • 93 (a)
(Bos Taurus)
Mammalia RBMX 36
  • 64 (a)
(Mus musculus)
Mammalia Rbmxl2 36
  • 64 (a)
(Monodelphis domestica)
Mammalia -- 36
  • 54 (a)
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 53 (a)
(Gallus gallus)
Aves RBMX 36
  • 57 (a)
(Anolis carolinensis)
Reptilia -- 36
  • 56 (a)
(Danio rerio)
Actinopterygii rbmx 36
  • 48 (a)
fruit fly
(Drosophila melanogaster)
Insecta tra2 36
  • 18 (a)
(Caenorhabditis elegans)
Secernentea rsp-8 36
  • 18 (a)
Species with no ortholog for RBMXL3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for RBMXL3 Gene

Gene Tree for RBMXL3 (if available)
Gene Tree for RBMXL3 (if available)

Paralogs for RBMXL3 Gene

Paralogs for RBMXL3 Gene

Selected SIMAP similar genes for RBMXL3 Gene using alignment to 1 proteins: Pseudogenes for RBMXL3 Gene

genes like me logo Genes that share paralogs with RBMXL3: view

Variants for RBMXL3 Gene

Structural Variations from Database of Genomic Variants (DGV) for RBMXL3 Gene

Variant ID Type Subtype PubMed ID
esv33994 CNV Gain+Loss 17666407
nsv520351 CNV Gain 19592680

Relevant External Links for RBMXL3 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for RBMXL3 Gene

Disorders for RBMXL3 Gene

No disorders were found for RBMXL3 Gene.

No data available for UniProtKB/Swiss-Prot for RBMXL3 Gene

Publications for RBMXL3 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3 4
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. Integrative analysis of the ubiquitin proteome isolated using Tandem Ubiquitin Binding Entities (TUBEs). (PMID: 22178446) Lopitz-Otsoa F. … Rodriguez M.S. (J Proteomics 2012) 3
  5. MMS19 assembles iron-sulfur proteins required for DNA metabolism and genomic integrity. (PMID: 22678362) Stehling O. … Lill R. (Science 2012) 3

Products for RBMXL3 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate RBMXL3
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for RBMXL3
    • Block miRNA regulation of RBMXL3 using miScript Target Protectors

    Sources for RBMXL3 Gene

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