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RBMX2 Gene

protein-coding   GIFtS: 44
GCID: GC0XP129535

RNA Binding Motif Protein, X-Linked 2

  See related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
RNA Binding Motif Protein, X-Linked 21 2
CGI-792
RNA-Binding Motif Protein, X-Linked 22

External Ids:    HGNC: 242821   Entrez Gene: 516342   Ensembl: ENSG000001345977   UniProtKB: Q9Y3883   

Export aliases for RBMX2 gene to outside databases

Previous GC identifers: GC0XP128242 GC0XP129261 GC0XP129363 GC0XP118931


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for RBMX2 Gene:
RBMX2 (RNA binding motif protein, X-linked 2) is a protein-coding gene. Diseases associated with RBMX2 include malaria. GO annotations related to this gene include RNA binding and nucleotide binding. An important paralog of this gene is CSTF2T.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Regulatory transcription factor binding sites in the RBMX2 gene promoter:
         Max1   GR   USF1   LHX3b/Lhx3b   FOXD1   Ik-3   USF-1   LHX3a/Lhx3a   GR-alpha   MRF-2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidRBMX2 promoter sequence
   Search Chromatin IP Primers for RBMX2

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat RBMX2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: Xq26.1   Ensembl cytogenetic band:  Xq26.1   HGNC cytogenetic band: Xq26.1

RBMX2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RBMX2 gene location

GeneLoc information about chromosome X         GeneLoc Exon Structure

GeneLoc location for GC0XP129535:  view genomic region     (about GC identifiers)

Start:
129,535,943 bp from pter      End:
129,547,317 bp from pter
Size:
11,375 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: RBMX2_HUMAN, Q9Y388 (See protein sequence)
Recommended Name: RNA-binding motif protein, X-linked 2  
Size: 322 amino acids; 37336 Da
Secondary accessions: A8K9Z0 Q5JY82 Q9Y3I8

Explore the universe of human proteins at neXtProt for RBMX2: NX_Q9Y388

Explore proteomics data for RBMX2 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See RBMX2 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_057108.2  
    ENSEMBL proteins: 
     ENSP00000339090   ENSP00000359985  

    RBMX2 Human Recombinant Protein Products:

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    RBM: RNA binding motif (RRM) containing

    2 InterPro protein domains:
     IPR012677 Nucleotide-bd_a/b_plait
     IPR000504 RRM_dom

    Graphical View of Domain Structure for InterPro Entry Q9Y388

    ProtoNet protein and cluster: Q9Y388

    1 Blocks protein domain: IPB000504 RNA-binding region RNP-1 (RNA recognition motif)

    UniProtKB/Swiss-Prot: RBMX2_HUMAN, Q9Y388
    Similarity: Belongs to the IST3 family
    Similarity: Contains 1 RRM (RNA recognition motif) domain


    RBMX2 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 5 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000166nucleotide binding IEA--
    GO:0003676nucleic acid binding ----
    GO:0003723RNA binding ----
    GO:0005515protein binding IPI--
    GO:0044822poly(A) RNA binding IDA--
         
    RBMX2 for ontologies           About GeneDecksing


    Phenotypes:
         1 GenomeRNAi human phenotype for RBMX2:
     Increased gamma-H2AX phosphory 

    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for RBMX2
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    miRNA
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    Block miRNA regulation of human, mouse, rat RBMX2 using miScript Target Protectors
    2 qRT-PCR Assays for microRNAs that regulate RBMX2:
    hsa-miR-204 hsa-miR-211
    SwitchGear 3'UTR luciferase reporter plasmidRBMX2 3' UTR sequence
    Inhib. RNA
    Products:
        
    OriGene RNAi products in human, mouse, rat for RBMX2
    Predesigned siRNA for gene silencing in human, mouse, rat RBMX2

    Gene Editing
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    Clone
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    GenScript: all cDNA clones in your preferred vector: RBMX2 (NM_016024)
    Browse Sino Biological Human cDNA Clones
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    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RBMX2

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    In Situ Assay
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RBMX2


    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus3

    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for RBMX2
    Interactions:

        Search GeneGlobe Interaction Network for RBMX2

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    Selected Interacting proteins for RBMX2 (Q9Y3881, 2 ENSP000003390904) via UniProtKB, MINT, STRING, and/or I2D (see all 82)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    BUD13Q9BRD01, 2, ENSP000002602104EBI-7704044,EBI-2561235 MINT-8337365 MINT-8331415 STRING: ENSP00000260210
    NKAPQ8N5F71, 2, ENSP000003604644EBI-7704044,EBI-721539 MINT-8331426 MINT-8337398 STRING: ENSP00000360464
    DHX8Q145622, ENSP000002624154MINT-8337387 STRING: ENSP00000262415
    PRPF40AO754002MINT-8333240
    CDC5LENSP000003605324STRING: ENSP00000360532
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for RBMX2



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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    REFSEQ mRNAs for RBMX2 gene: 
    NM_016024.2  

    4 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000305536(uc004evt.3) ENST00000469953 ENST00000370947 ENST00000487274

    miRNA
    Products:
         
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    2 qRT-PCR Assays for microRNAs that regulate RBMX2:
    hsa-miR-204 hsa-miR-211
    SwitchGear 3'UTR luciferase reporter plasmidRBMX2 3' UTR sequence
    Inhib. RNA
    Products:
         
    OriGene RNAi products in human, mouse, rat for RBMX2
    Predesigned siRNA for gene silencing in human, mouse, rat RBMX2
    Clone
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    OriGene clones in human, mouse for RBMX2 (see all 7)
    OriGene ORF clones in mouse, rat for RBMX2
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
    GenScript: all cDNA clones in your preferred vector: RBMX2 (NM_016024)
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    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RBMX2
    Primer
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    OriGene qSTAR qPCR primer pairs in human, mouse for RBMX2
    Pre-validated RT2 qPCR Primer Assay in human, mouse, rat RBMX2
      QuantiTect SYBR Green Assays in human, mouse, rat RBMX2
      QuantiFast Probe-based Assays in human, mouse, rat RBMX2

    Selected AceView cDNA sequences (see all 159):

    AI879604 T10751 AI917337 BC040433 BC010036 BM747884 AA626806 AL050405 
    AI672755 AW593805 BC063517 AI090665 BC050707 BE672261 AA515763 BU688491 
    AI419267 BM695435 CR601085 BU687237 BC012345 AI224111 BX283976 BU164978 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    RBMX2 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: CCCAAACCTT
    RBMX2 Expression
    About this image

    RBMX2 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    RBMX2 Protein Expression
        Custom PCR Arrays for RBMX2
    Primer
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    OriGene qSTAR qPCR primer pairs in human, mouse for RBMX2
    Pre-validated RT2 qPCR Primer Assay in human, mouse, rat RBMX2
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    QuantiFast Probe-based Assays in human, mouse, rat RBMX2
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RBMX2

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of eukaryotes.

    Orthologs for RBMX2 gene from Selected species (see all 18)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Rbmx21 , 5 RNA binding motif protein, X-linked 21, 5 78.97(n)1
    75.27(a)1
      X (25.69 cM)5
    2090031  NM_173376.31  NP_775552.11 
     486950045 
    chicken
    (Gallus gallus)
    Aves RBMX26
    RNA binding motif protein, X-linked 2
    49(a)
    1 ↔ 1
    4(1544392-1546091)
    lizard
    (Anolis carolinensis)
    Reptilia RBMX26
    RNA binding motif protein, X-linked 2
    58(a)
    1 ↔ 1
    GL343451.1(321419-327064)
    African clawed frog
    (Xenopus laevis)
    Amphibia MGC643762 hypothetical protein MGC64376 73.38(n)    BC056844.1 
    zebrafish
    (Danio rerio)
    Actinopterygii rbmx26
    RNA binding motif protein, X-linked 2
    35(a)
    1 ↔ 1
    21(37599238-37608002) ENSDARG00000044380
    fruit fly
    (Drosophila melanogaster)
    Insecta CG104661 CG10466 64.96(n)
    66.42(a)
      35268  NM_136159.3  NP_610003.1 
    worm
    (Caenorhabditis elegans)
    Secernentea C30B5.46
    Protein C30B5.4 (C30B5.4) mRNA, complete cds
    37(a)
    1 ↔ 1
    II(6195811-6196959) WBGene00016245
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes IST36
    Component of the U2 snRNP, required for the first ...
    44(a)
    1 → many
    IX(364889-365335) YIR005W
    rice
    (Oryza sativa)
    Liliopsida Os.73672 Oryza sativa (japonica cultivar-group) cDNA cloneJ more 71.18(n)    AK071472.1 


    ENSEMBL Gene Tree for RBMX2 (if available)
    TreeFam Gene Tree for RBMX2 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for RBMX2 gene
    CSTF2T2  CSTF22  
    3 SIMAP similar genes for RBMX2 using alignment to 4 protein entries:     RBMX2_HUMAN (see all proteins):
    ZCRB1    CSTF2    RBM38

    RBMX2 for paralogs           About GeneDecksing


    5 Pseudogenes.org Pseudogenes for RBMX2
    PGOHUM00000244162 PGOHUM00000239035 PGOHUM00000251320 PGOHUM00000250852 PGOHUM00000241577


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for RBMX2 (see all 219)    About this table    
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr X posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1824317661,2
    --129534005(+) TCTCGA/GAACAC 1 -- us2k10--------
    rs1851370111,2
    --129534237(+) TTGGAA/CTGGGG 1 -- us2k10--------
    rs743396321,2
    C--129534244(+) GGGGA-/GGGGGG 1 -- us2k10--------
    rs1402099601,2
    --129534274(+) AGGAGC/GAACTG 1 -- us2k10--------
    rs1439949581,2
    C--129534283(+) TGTCAC/TTGGTG 1 -- us2k10--------
    rs59772591,2
    C,F,A,H--129534504(+) AATATG/AGGTTA 1 -- us2k1 tfbs37Minor allele frequency- A:0.01NS EA NA 810
    rs1490725141,2
    --129534647(+) CTCCTC/GTCTAC 1 -- us2k10--------
    rs1908934041,2
    --129534682(+) CTAGAC/TGTTCA 1 -- us2k10--------
    rs1828400751,2
    --129534787(+) AATGAA/GGGTGG 1 -- us2k10--------
    rs1135444821,2
    C--129534813(+) TTTTTT/-AAATA 1 -- us2k11Minor allele frequency- -:0.00CSA 2

    HapMap Linkage Disequilibrium report for RBMX2 (129535943 - 129547317 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 4 variations for RBMX2:    About this table    
    Variant IDTypeSubtypePubMed ID
    esv2017730CNV Deletion18987734
    esv2740470CNV Deletion23290073
    esv2440853CNV Deletion19546169
    nsv528290CNV Gain19592680

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing RBMX2
    DNA2.0 Custom Variant and Variant Library Synthesis for RBMX2

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    1 disease for RBMX2:    About MalaCards
    malaria


    RBMX2 for disorders           About GeneDecksing


    Export disorders for RBMX2 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for RBMX2 gene, integrated from 10 sources (see all 15):
    (articles sorted by number of sources associating them with RBMX2)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics. (PubMed id 10810093)1, 2, 3 Lai C.-H.... Lin W.-C. (Genome Res. 2000)
    2. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)1, 2 Olsen J.V....Mann M. (Cell 2006)
    3. The DNA sequence of the human X chromosome. (PubMed id 15772651)1, 2 Ross M.T.... Bentley D.R. (Nature 2005)
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    5. Pathway Analysis of ChIP-Seq-Based NRF1 Target Genes Suggests a Logical Hypothesis of their Involvement in the Pathogenesis of Neurodegenerative Diseases. (PubMed id 24250222)1 Satoh J....Yamamoto Y. (Gene Regul Syst Bio 2013)
    6. Dynamic protein-protein interaction wiring of the human spliceosome. (PubMed id 22365833)1 Hegele A....Stelzl U. (Mol. Cell 2012)
    7. System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation. (PubMed id 21406692)2 Rigbolt K.T....Blagoev B. (Sci. Signal. 2011)
    8. Systematic analysis of human protein complexes identifies chromosome segregation proteins. (PubMed id 20360068)1 Hutchins J.R.... Peters J.M. (Science 2010)
    9. Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. (PubMed id 20068231)2 Olsen J.V....Mann M. (Sci. Signal. 2010)
    10. Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach. (PubMed id 19413330)2 Gauci S....Mohammed S. (Anal. Chem. 2009)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 51634 HGNC: 24282 AceView: RBMX2 Ensembl:ENSG00000134597 euGenes: HUgn51634
    ECgene: RBMX2 H-InvDB: RBMX2

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for RBMX2 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for RBMX2 gene:
    Search GeneIP for patents involving RBMX2

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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