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Aliases for RBMX2 Gene

Aliases for RBMX2 Gene

  • RNA Binding Motif Protein, X-Linked 2 2 3
  • RNA-Binding Motif Protein, X-Linked 2 3
  • CGI-79 3
  • Snu17 3

External Ids for RBMX2 Gene

Previous GeneCards Identifiers for RBMX2 Gene

  • GC0XP128242
  • GC0XP129261
  • GC0XP129363
  • GC0XP129535
  • GC0XP118931

Summaries for RBMX2 Gene

GeneCards Summary for RBMX2 Gene

RBMX2 (RNA Binding Motif Protein, X-Linked 2) is a Protein Coding gene. GO annotations related to this gene include RNA binding and nucleotide binding. An important paralog of this gene is CSTF2T.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RBMX2 Gene

Genomics for RBMX2 Gene

Regulatory Elements for RBMX2 Gene

Genomic Location for RBMX2 Gene

Start:
130,401,969 bp from pter
End:
130,413,343 bp from pter
Size:
11,375 bases
Orientation:
Plus strand

Genomic View for RBMX2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RBMX2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RBMX2 Gene

Proteins for RBMX2 Gene

  • Protein details for RBMX2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y388-RBMX2_HUMAN
    Recommended name:
    RNA-binding motif protein, X-linked 2
    Protein Accession:
    Q9Y388
    Secondary Accessions:
    • A8K9Z0
    • Q5JY82
    • Q9Y3I8

    Protein attributes for RBMX2 Gene

    Size:
    322 amino acids
    Molecular mass:
    37336 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RBMX2 Gene

Proteomics data for RBMX2 Gene at MOPED

Post-translational modifications for RBMX2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RBMX2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RBMX2 Gene

Domains for RBMX2 Gene

Gene Families for RBMX2 Gene

HGNC:
  • RBM :RNA binding motif (RRM) containing

Protein Domains for RBMX2 Gene

Suggested Antigen Peptide Sequences for RBMX2 Gene

Graphical View of Domain Structure for InterPro Entry

Q9Y388

UniProtKB/Swiss-Prot:

RBMX2_HUMAN :
  • Q9Y388
Domain:
  • Contains 1 RRM (RNA recognition motif) domain.
Family:
  • Belongs to the IST3 family.
genes like me logo Genes that share domains with RBMX2: view

Function for RBMX2 Gene

Gene Ontology (GO) - Molecular Function for RBMX2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000166 nucleotide binding IEA --
GO:0003676 nucleic acid binding --
GO:0005515 protein binding IPI 22365833
GO:0044822 poly(A) RNA binding IDA 22658674
genes like me logo Genes that share ontologies with RBMX2: view

Phenotypes for RBMX2 Gene

GenomeRNAi human phenotypes for RBMX2:
genes like me logo Genes that share phenotypes with RBMX2: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RBMX2

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RBMX2 Gene

Localization for RBMX2 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RBMX2 Gene COMPARTMENTS Subcellular localization image for RBMX2 gene
Compartment Confidence
nucleus 3

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for RBMX2 Gene

Pathways for RBMX2 Gene

SuperPathways for RBMX2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RBMX2 Gene

None

No data available for Pathways by source for RBMX2 Gene

Transcripts for RBMX2 Gene

Unigene Clusters for RBMX2 Gene

RNA binding motif protein, X-linked 2:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RBMX2

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for RBMX2

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RBMX2 Gene

No ASD Table

Relevant External Links for RBMX2 Gene

GeneLoc Exon Structure for
RBMX2
ECgene alternative splicing isoforms for
RBMX2

Expression for RBMX2 Gene

mRNA expression in normal human tissues for RBMX2 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for RBMX2 Gene

SOURCE GeneReport for Unigene cluster for RBMX2 Gene Hs.740515

genes like me logo Genes that share expressions with RBMX2: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for RBMX2 Gene

Orthologs for RBMX2 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for RBMX2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RBMX2 35
  • 98.03 (n)
  • 97.47 (a)
RBMX2 36
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 36
  • 74 (a)
OneToMany
RBMX2 35
  • 85.02 (n)
  • 80.06 (a)
RBMX2 36
  • 74 (a)
OneToMany
dog
(Canis familiaris)
Mammalia RBMX2 35
  • 83.23 (n)
  • 77.64 (a)
RBMX2 36
  • 78 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rbmx2 35
  • 78.97 (n)
  • 75.27 (a)
Rbmx2 16
Rbmx2 36
  • 71 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 60 (a)
OneToMany
-- 36
  • 68 (a)
OneToMany
-- 36
  • 51 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia RBMX2 36
  • 47 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rbmx2 35
  • 81.12 (n)
  • 78.14 (a)
chicken
(Gallus gallus)
Aves RBMX2 36
  • 49 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RBMX2 36
  • 58 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia MGC64376 35
zebrafish
(Danio rerio)
Actinopterygii rbmx2 36
  • 35 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP000977 35
  • 64.23 (n)
  • 66.42 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG10466 35
  • 64.96 (n)
  • 66.42 (a)
CG10466 36
  • 62 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea C30B5.4 36
  • 37 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes IST3 36
  • 44 (a)
OneToMany
rice
(Oryza sativa)
Liliopsida Os.7367 35
sea squirt
(Ciona savignyi)
Ascidiacea CSA.2920 36
  • 31 (a)
OneToOne
Species with no ortholog for RBMX2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for RBMX2 Gene

ENSEMBL:
Gene Tree for RBMX2 (if available)
TreeFam:
Gene Tree for RBMX2 (if available)

Paralogs for RBMX2 Gene

Paralogs for RBMX2 Gene

Selected SIMAP similar genes for RBMX2 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with RBMX2: view

Variants for RBMX2 Gene

Sequence variations from dbSNP and Humsavar for RBMX2 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs2235803 -- 130,411,819(+) CCACT(C/T)GACAT intron-variant
rs2294956 -- 130,404,526(+) AGGGC(C/T)AGAGG intron-variant
rs3747337 -- 130,413,140(-) CTAGT(A/G)TTTTC utr-variant-3-prime
rs3830827 -- 130,409,176(+) TATTA(-/TTT)GAATT intron-variant
rs5932764 -- 130,413,761(+) GCCCA(A/G)ACTGG downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for RBMX2 Gene

Variant ID Type Subtype PubMed ID
nsv528290 CNV Gain 19592680
esv2017730 CNV Deletion 18987734
esv2440853 CNV Deletion 19546169
esv2740470 CNV Deletion 23290073

Relevant External Links for RBMX2 Gene

HapMap Linkage Disequilibrium report
RBMX2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RBMX2 Gene

Disorders for RBMX2 Gene

No disorders were found for RBMX2 Gene.

No data available for UniProtKB/Swiss-Prot for RBMX2 Gene

Publications for RBMX2 Gene

  1. Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics. (PMID: 10810093) Lai C.-H. … Lin W.-C. (Genome Res. 2000) 2 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3 4
  4. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PMID: 17081983) Olsen J.V. … Mann M. (Cell 2006) 3 4
  5. Ubiquitin-mediated proteolysis of HuR by heat shock. (PMID: 19322201) Abdelmohsen K. … Gorospe M. (EMBO J. 2009) 3

Products for RBMX2 Gene

Sources for RBMX2 Gene

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