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Aliases for RBMS3-AS3 Gene

Subcategory (RNA class) for RBMS3-AS3 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RBMS3-AS3 Gene

  • RBMS3 Antisense RNA 3 2 3 5
  • RBMS3 Antisense RNA 3 (Non-Protein Coding) 2

External Ids for RBMS3-AS3 Gene

Previous GeneCards Identifiers for RBMS3-AS3 Gene

  • GC00U933602

Summaries for RBMS3-AS3 Gene

GeneCards Summary for RBMS3-AS3 Gene

RBMS3-AS3 (RBMS3 Antisense RNA 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RBMS3-AS3 Gene

Genomics for RBMS3-AS3 Gene

Regulatory Elements for RBMS3-AS3 Gene

Enhancers for RBMS3-AS3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G029279 1.5 Ensembl ENCODE dbSUPER 25.6 +6.7 6692 9.8 PKNOX1 FOXA2 WRNIP1 SIN3A GATA2 CBX5 FOS DEK ZNF263 JUNB RBMS3-AS3 RBMS3 GC03P029245
GH03G029323 1.3 Ensembl ENCODE dbSUPER 10.7 -33.7 -33730 1.8 HDGF PKNOX1 JUN ZSCAN4 MAX GATA2 ETV6 RELB FOS IKZF2 RBMS3 RBMS3-AS3 GC03M029337
GH03G029319 0.4 Ensembl 10.7 -29.2 -29175 0.2 MTA2 TBX21 RBMS3 RBMS3-AS3 GC03M029337
GH03G029295 0.4 dbSUPER 5.8 -6.5 -6507 2.8 CEBPB RBMS3-AS3 GC03M029337
GH03G029339 0.2 Ensembl 10.6 -48.6 -48575 0.6 RBMS3-AS3 GC03M029337 GC03P029345
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RBMS3-AS3 on UCSC Golden Path with GeneCards custom track

Genomic Location for RBMS3-AS3 Gene

Chromosome:
3
Start:
29,264,194 bp from pter
End:
29,290,726 bp from pter
Size:
26,533 bases
Orientation:
Minus strand

Genomic View for RBMS3-AS3 Gene

Genes around RBMS3-AS3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RBMS3-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RBMS3-AS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RBMS3-AS3 Gene

Proteins for RBMS3-AS3 Gene

Post-translational modifications for RBMS3-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RBMS3-AS3 Gene

Domains & Families for RBMS3-AS3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RBMS3-AS3 Gene

Function for RBMS3-AS3 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RBMS3-AS3 Gene

Localization for RBMS3-AS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RBMS3-AS3 Gene

Pathways & Interactions for RBMS3-AS3 Gene

SuperPathways for RBMS3-AS3 Gene

No Data Available

Interacting Proteins for RBMS3-AS3 Gene

Gene Ontology (GO) - Biological Process for RBMS3-AS3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RBMS3-AS3 Gene

Drugs & Compounds for RBMS3-AS3 Gene

No Compound Related Data Available

Transcripts for RBMS3-AS3 Gene

mRNA/cDNA for RBMS3-AS3 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RBMS3-AS3 Gene

No ASD Table

Relevant External Links for RBMS3-AS3 Gene

GeneLoc Exon Structure for
RBMS3-AS3
ECgene alternative splicing isoforms for
RBMS3-AS3

Expression for RBMS3-AS3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RBMS3-AS3 Gene

mRNA differential expression in normal tissues according to GTEx for RBMS3-AS3 Gene

This gene is overexpressed in Muscle - Skeletal (x4.1).
genes like me logo Genes that share expression patterns with RBMS3-AS3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RBMS3-AS3 Gene

Orthologs for RBMS3-AS3 Gene

Evolution for RBMS3-AS3 Gene

ENSEMBL:
Gene Tree for RBMS3-AS3 (if available)
TreeFam:
Gene Tree for RBMS3-AS3 (if available)

No data available for Orthologs for RBMS3-AS3 Gene

Paralogs for RBMS3-AS3 Gene

No data available for Paralogs for RBMS3-AS3 Gene

Variants for RBMS3-AS3 Gene

Sequence variations from dbSNP and Humsavar for RBMS3-AS3 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000324295 -- 29,265,303(+) ACTGA(A/G)TGAGA intron-variant
rs1000353121 -- 29,270,621(+) AATTA(C/G)ATTTT intron-variant
rs1000455504 -- 29,269,915(+) GTTCA(A/T)GCGGA intron-variant
rs1000892737 -- 29,274,202(+) GTAGT(A/G)TATAC intron-variant
rs1000961521 -- 29,269,658(+) AATTA(C/T)TTGTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RBMS3-AS3 Gene

Variant ID Type Subtype PubMed ID
esv2759137 CNV loss 17122850
nsv1010530 CNV gain 25217958
nsv1131687 CNV deletion 24896259
nsv590026 CNV gain 21841781

Relevant External Links for RBMS3-AS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RBMS3-AS3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RBMS3-AS3 Gene

Disorders for RBMS3-AS3 Gene

Relevant External Links for RBMS3-AS3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RBMS3-AS3

No disorders were found for RBMS3-AS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RBMS3-AS3 Gene

Publications for RBMS3-AS3 Gene

  1. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 3 64
  2. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington J.J. … Ducar M. (Nat. Biotechnol. 2001) 3 64

Products for RBMS3-AS3 Gene

Sources for RBMS3-AS3 Gene

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