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Aliases for RBMS3-AS3 Gene

Subcategory (RNA class) for RBMS3-AS3 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RBMS3-AS3 Gene

  • RBMS3 Antisense RNA 3 2 3 5
  • RBMS3 Antisense RNA 3 (Non-Protein Coding) 2

External Ids for RBMS3-AS3 Gene

Previous GeneCards Identifiers for RBMS3-AS3 Gene

  • GC00U933602

Summaries for RBMS3-AS3 Gene

GeneCards Summary for RBMS3-AS3 Gene

RBMS3-AS3 (RBMS3 Antisense RNA 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RBMS3-AS3 Gene

Genomics for RBMS3-AS3 Gene

Regulatory Elements for RBMS3-AS3 Gene

Enhancers for RBMS3-AS3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F029279 0.9 Ensembl ENCODE 25.6 +6.7 6692 9.8 TBP PKNOX1 TBL1XR1 WRNIP1 SIN3A RAD21 ZBTB40 RFX5 ZNF366 CBX5 RBMS3-AS3 RBMS3 GC03P029245
GH03F029319 0.2 Ensembl 10.7 -29.3 -29275 0.4 MTA2 TBX21 RBMS3 RBMS3-AS3 GC03M029337
GH03F029323 1.2 Ensembl ENCODE 10.7 -33.7 -33730 1.8 HDGF PKNOX1 MTA2 JUN USF2 CHD1 MAX NR3C1 RAD51 IKZF1 RBMS3 RBMS3-AS3 GC03M029337
GH03F029339 0.4 Ensembl 10.6 -48.6 -48575 0.6 RBMS3-AS3 GC03M029337 GC03P029345
GH03F029291 0.5 Ensembl ENCODE 0.8 -1.2 -1220 1.6 MAX CEBPG ZNF644 RAD21 ZNF7 TEAD3 YY1 SCRT2 HNF4G RCOR1 RBMS3-AS3 GC03M029337
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RBMS3-AS3 on UCSC Golden Path with GeneCards custom track

Genomic Location for RBMS3-AS3 Gene

Chromosome:
3
Start:
29,264,194 bp from pter
End:
29,290,726 bp from pter
Size:
26,533 bases
Orientation:
Minus strand

Genomic View for RBMS3-AS3 Gene

Genes around RBMS3-AS3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RBMS3-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RBMS3-AS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RBMS3-AS3 Gene

Proteins for RBMS3-AS3 Gene

Post-translational modifications for RBMS3-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RBMS3-AS3 Gene

Domains & Families for RBMS3-AS3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RBMS3-AS3 Gene

Function for RBMS3-AS3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RBMS3-AS3 Gene

Localization for RBMS3-AS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RBMS3-AS3 Gene

Pathways & Interactions for RBMS3-AS3 Gene

SuperPathways for RBMS3-AS3 Gene

No Data Available

Interacting Proteins for RBMS3-AS3 Gene

Gene Ontology (GO) - Biological Process for RBMS3-AS3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RBMS3-AS3 Gene

Transcripts for RBMS3-AS3 Gene

mRNA/cDNA for RBMS3-AS3 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RBMS3-AS3 Gene

No ASD Table

Relevant External Links for RBMS3-AS3 Gene

GeneLoc Exon Structure for
RBMS3-AS3
ECgene alternative splicing isoforms for
RBMS3-AS3

Expression for RBMS3-AS3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RBMS3-AS3 Gene

mRNA differential expression in normal tissues according to GTEx for RBMS3-AS3 Gene

This gene is overexpressed in Muscle - Skeletal (x4.1).
genes like me logo Genes that share expression patterns with RBMS3-AS3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RBMS3-AS3 Gene

Orthologs for RBMS3-AS3 Gene

Evolution for RBMS3-AS3 Gene

ENSEMBL:
Gene Tree for RBMS3-AS3 (if available)
TreeFam:
Gene Tree for RBMS3-AS3 (if available)

No data available for Orthologs for RBMS3-AS3 Gene

Paralogs for RBMS3-AS3 Gene

No data available for Paralogs for RBMS3-AS3 Gene

Variants for RBMS3-AS3 Gene

Sequence variations from dbSNP and Humsavar for RBMS3-AS3 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs10490855 -- 29,271,319(+) TAGAA(A/C)ATATT intron-variant
rs10537286 -- 29,264,995(+) AAAAT(-/AGAA)GGAGA intron-variant
rs10627992 -- 29,266,964(+) TTGGG(-/ACAC/ACACAC/ACACACAC)ACACA intron-variant
rs10663721 -- 29,281,115(+) CAAGG(-/T)TTTTT upstream-variant-2KB, utr-variant-5-prime
rs10707897 -- 29,281,146(+) TTTTC(-/T)TTTTT upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for RBMS3-AS3 Gene

Variant ID Type Subtype PubMed ID
esv2759137 CNV loss 17122850
nsv1010530 CNV gain 25217958
nsv1131687 CNV deletion 24896259
nsv590026 CNV gain 21841781

Relevant External Links for RBMS3-AS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RBMS3-AS3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RBMS3-AS3 Gene

Disorders for RBMS3-AS3 Gene

Relevant External Links for RBMS3-AS3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RBMS3-AS3

No disorders were found for RBMS3-AS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RBMS3-AS3 Gene

Publications for RBMS3-AS3 Gene

  1. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 3 64
  2. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington J.J. … Ducar M. (Nat. Biotechnol. 2001) 3 64

Products for RBMS3-AS3 Gene

Sources for RBMS3-AS3 Gene

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