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Aliases for RBMS3-AS3 Gene

Subcategory (RNA class) for RBMS3-AS3 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RBMS3-AS3 Gene

  • RBMS3 Antisense RNA 3 2 3 5
  • RBMS3 Antisense RNA 3 (Non-Protein Coding) 2

External Ids for RBMS3-AS3 Gene

Previous GeneCards Identifiers for RBMS3-AS3 Gene

  • GC00U933602

Summaries for RBMS3-AS3 Gene

GeneCards Summary for RBMS3-AS3 Gene

RBMS3-AS3 (RBMS3 Antisense RNA 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for RBMS3-AS3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RBMS3-AS3 Gene

Genomics for RBMS3-AS3 Gene

GeneHancer (GH) Regulatory Elements for RBMS3-AS3 Gene

Promoters and enhancers for RBMS3-AS3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I029291 Enhancer 1 ENCODE dbSUPER 550.8 -1.2 -1219 1.6 FOXA2 MAX CEBPG ZNF644 RAD21 ZNF7 YY1 TEAD3 SCRT2 HNF4G RBMS3-AS3 GC03M029337 RBMS3 ENSG00000283563
GH03I029279 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 25.6 +6.7 6692 9.8 SIN3A MZF1 BATF RAD21 RFX5 ZNF335 ZNF366 ZSCAN5C ZNF143 ATF7 RBMS3 RBMS3-AS3 GC03P029245 ENSG00000283563
GH03I029323 Enhancer 1.1 Ensembl ENCODE dbSUPER 10.7 -33.7 -33730 1.8 HDGF PKNOX1 JUN ZSCAN4 MAX PAX8 ATF7 FOSL2 ETV6 BCLAF1 RBMS3 RBMS3-AS3 GC03M029337 ENSG00000283563
GH03I029319 Enhancer 0.3 Ensembl 10.7 -29.2 -29175 0.2 ZNF217 RBMS3 RBMS3-AS3 GC03M029337 ENSG00000283563
GH03I029339 Enhancer 0.2 Ensembl 10.6 -48.6 -48575 0.6 GC03M029337 RBMS3-AS3 GC03P029345 RBMS3 ENSG00000283563
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RBMS3-AS3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RBMS3-AS3 Gene

Genomic Locations for RBMS3-AS3 Gene
chr3:29,264,194-29,290,726
(GRCh38/hg38)
Size:
26,533 bases
Orientation:
Minus strand
chr3:29,305,685-29,332,217
(GRCh37/hg19)

Genomic View for RBMS3-AS3 Gene

Genes around RBMS3-AS3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RBMS3-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RBMS3-AS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RBMS3-AS3 Gene

Proteins for RBMS3-AS3 Gene

Post-translational modifications for RBMS3-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RBMS3-AS3 Gene

Domains & Families for RBMS3-AS3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RBMS3-AS3 Gene

Function for RBMS3-AS3 Gene

Phenotypes From GWAS Catalog for RBMS3-AS3 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RBMS3-AS3 Gene

Localization for RBMS3-AS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RBMS3-AS3 Gene

Pathways & Interactions for RBMS3-AS3 Gene

SuperPathways for RBMS3-AS3 Gene

No Data Available

Interacting Proteins for RBMS3-AS3 Gene

Gene Ontology (GO) - Biological Process for RBMS3-AS3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RBMS3-AS3 Gene

Drugs & Compounds for RBMS3-AS3 Gene

No Compound Related Data Available

Transcripts for RBMS3-AS3 Gene

mRNA/cDNA for RBMS3-AS3 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RBMS3-AS3 Gene

No ASD Table

Relevant External Links for RBMS3-AS3 Gene

GeneLoc Exon Structure for
RBMS3-AS3
ECgene alternative splicing isoforms for
RBMS3-AS3

Expression for RBMS3-AS3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RBMS3-AS3 Gene

mRNA differential expression in normal tissues according to GTEx for RBMS3-AS3 Gene

This gene is overexpressed in Muscle - Skeletal (x4.1).
genes like me logo Genes that share expression patterns with RBMS3-AS3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RBMS3-AS3 Gene

Orthologs for RBMS3-AS3 Gene

Evolution for RBMS3-AS3 Gene

ENSEMBL:
Gene Tree for RBMS3-AS3 (if available)
TreeFam:
Gene Tree for RBMS3-AS3 (if available)

No data available for Orthologs for RBMS3-AS3 Gene

Paralogs for RBMS3-AS3 Gene

No data available for Paralogs for RBMS3-AS3 Gene

Variants for RBMS3-AS3 Gene

Sequence variations from dbSNP and Humsavar for RBMS3-AS3 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000324295 -- 29,265,303(-) G/A intron_variant
rs1000353121 -- 29,270,621(-) G/C intron_variant
rs1000455504 -- 29,269,915(-) T/A intron_variant
rs1000892737 -- 29,274,202(-) A/G intron_variant
rs1000961521 -- 29,269,658(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for RBMS3-AS3 Gene

Variant ID Type Subtype PubMed ID
esv2759137 CNV loss 17122850
nsv1010530 CNV gain 25217958
nsv1131687 CNV deletion 24896259
nsv590026 CNV gain 21841781

Additional Variant Information for RBMS3-AS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RBMS3-AS3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RBMS3-AS3 Gene

Disorders for RBMS3-AS3 Gene

Additional Disease Information for RBMS3-AS3

No disorders were found for RBMS3-AS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RBMS3-AS3 Gene

Publications for RBMS3-AS3 Gene

  1. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3 58
  2. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 58

Products for RBMS3-AS3 Gene

Sources for RBMS3-AS3 Gene

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