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Aliases for RBMS2 Gene

Aliases for RBMS2 Gene

  • RNA Binding Motif, Single Stranded Interacting Protein 2 2 3
  • Suppressor Of CDC2 With RNA-Binding Motif 3 3 4
  • SCR3 3 4
  • RNA-Binding Motif, Single-Stranded-Interacting Protein 2 3

External Ids for RBMS2 Gene

Previous GeneCards Identifiers for RBMS2 Gene

  • GC12P056808
  • GC12P057140
  • GC12P056632
  • GC12P055202
  • GC12P056915
  • GC12P053954

Summaries for RBMS2 Gene

Entrez Gene Summary for RBMS2 Gene

  • The protein encoded by this gene is a member of a small family of proteins which bind single stranded DNA/RNA. These proteins are characterized by the presence of two sets of ribonucleoprotein consensus sequence (RNP-CS) that contain conserved motifs, RNP1 and RNP2, originally described in RNA binding proteins, and required for DNA binding. The RBMS proteins have been implicated in such diverse functions as DNA replication, gene transcription, cell cycle progression and apoptosis. This protein was isolated by phenotypic complementation of cdc2 and cdc13 mutants of yeast and is thought to suppress cdc2 and cdc13 mutants through the induction of translation of cdc2. [provided by RefSeq, Jul 2008]

GeneCards Summary for RBMS2 Gene

RBMS2 (RNA Binding Motif, Single Stranded Interacting Protein 2) is a Protein Coding gene. GO annotations related to this gene include RNA binding and nucleotide binding. An important paralog of this gene is PABPC1.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RBMS2 Gene

Genomics for RBMS2 Gene

Regulatory Elements for RBMS2 Gene

Genomic Location for RBMS2 Gene

Start:
56,521,825 bp from pter
End:
56,596,196 bp from pter
Size:
74,372 bases
Orientation:
Plus strand

Genomic View for RBMS2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RBMS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RBMS2 Gene

Proteins for RBMS2 Gene

  • Protein details for RBMS2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q15434-RBMS2_HUMAN
    Recommended name:
    RNA-binding motif, single-stranded-interacting protein 2
    Protein Accession:
    Q15434
    Secondary Accessions:

    Protein attributes for RBMS2 Gene

    Size:
    407 amino acids
    Molecular mass:
    43959 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for RBMS2 Gene

neXtProt entry for RBMS2 Gene

Proteomics data for RBMS2 Gene at MOPED

Post-translational modifications for RBMS2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RBMS2 Gene

No data available for DME Specific Peptides for RBMS2 Gene

Domains for RBMS2 Gene

Gene Families for RBMS2 Gene

HGNC:
  • RBM :RNA binding motif (RRM) containing

Protein Domains for RBMS2 Gene

Suggested Antigen Peptide Sequences for RBMS2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q15434

UniProtKB/Swiss-Prot:

RBMS2_HUMAN :
  • Q15434
Domain:
  • Contains 2 RRM (RNA recognition motif) domains.
genes like me logo Genes that share domains with RBMS2: view

Function for RBMS2 Gene

Gene Ontology (GO) - Molecular Function for RBMS2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000166 nucleotide binding IEA --
GO:0003676 nucleic acid binding --
GO:0003723 RNA binding TAS 8041632
GO:0044822 poly(A) RNA binding IDA 22658674
genes like me logo Genes that share ontologies with RBMS2: view

Phenotypes for RBMS2 Gene

GenomeRNAi human phenotypes for RBMS2:
genes like me logo Genes that share phenotypes with RBMS2: view

miRNA for RBMS2 Gene

miRTarBase miRNAs that target RBMS2

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for RBMS2 Gene

Localization for RBMS2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for RBMS2 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RBMS2 Gene COMPARTMENTS Subcellular localization image for RBMS2 gene
Compartment Confidence
nucleus 3
cytosol 1
extracellular 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for RBMS2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with RBMS2: view

Pathways for RBMS2 Gene

SuperPathways for RBMS2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RBMS2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing TAS 8041632
genes like me logo Genes that share ontologies with RBMS2: view

No data available for Pathways by source for RBMS2 Gene

Transcripts for RBMS2 Gene

Unigene Clusters for RBMS2 Gene

RNA binding motif, single stranded interacting protein 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RBMS2 Gene

No ASD Table

Relevant External Links for RBMS2 Gene

GeneLoc Exon Structure for
RBMS2
ECgene alternative splicing isoforms for
RBMS2

Expression for RBMS2 Gene

mRNA expression in normal human tissues for RBMS2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for RBMS2 Gene

SOURCE GeneReport for Unigene cluster for RBMS2 Gene Hs.505729

genes like me logo Genes that share expressions with RBMS2: view

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for RBMS2 Gene

Orthologs for RBMS2 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for RBMS2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RBMS2 35
  • 98.79 (n)
  • 97.21 (a)
RBMS2 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RBMS2 35
  • 90.25 (n)
  • 93.37 (a)
RBMS2 36
  • 93 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RBMS2 35
  • 90.99 (n)
  • 93.37 (a)
RBMS2 36
  • 93 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rbms2 35
  • 86.02 (n)
  • 88.13 (a)
Rbms2 16
Rbms2 36
  • 89 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RBMS2 36
  • 62 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rbms2 35
  • 87.07 (n)
  • 90.5 (a)
chicken
(Gallus gallus)
Aves RBMS2 36
  • 62 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RBMS2 36
  • 82 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rbms2 35
  • 73.52 (n)
  • 79.19 (a)
zebrafish
(Danio rerio)
Actinopterygii rbms2a 35
  • 71.87 (n)
  • 75.96 (a)
rbms2a 36
  • 74 (a)
OneToMany
rbms2b 36
  • 73 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta shep 36
  • 30 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea sup-26 36
  • 30 (a)
OneToMany
R10E4.2b 37
  • 57 (a)
R10E4.2a 37
  • 53 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes PAB1 36
  • 13 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.1122 36
  • 42 (a)
OneToMany
Species with no ortholog for RBMS2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RBMS2 Gene

ENSEMBL:
Gene Tree for RBMS2 (if available)
TreeFam:
Gene Tree for RBMS2 (if available)

Paralogs for RBMS2 Gene

Pseudogenes.org Pseudogenes for RBMS2 Gene

genes like me logo Genes that share paralogs with RBMS2: view

Variants for RBMS2 Gene

Sequence variations from dbSNP and Humsavar for RBMS2 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs9368 -- 56,594,558(+) TCCCA(A/C)GCATT utr-variant-3-prime
rs10450 -- 56,590,822(+) CTGTC(C/T)AGAGC utr-variant-3-prime
rs11472 -- 56,590,967(-) TAAAG(A/G)ACTCC utr-variant-3-prime
rs774211 -- 56,527,155(+) GTACT(C/T)CTAAC intron-variant
rs774212 -- 56,529,221(+) atggt(A/G)tgccc intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RBMS2 Gene

Variant ID Type Subtype PubMed ID
nsv899106 CNV Gain 21882294
esv1272042 CNV Insertion 17803354
esv2662220 CNV Deletion 23128226
nsv526706 CNV Gain 19592680
nsv820140 CNV Loss 19587683

Relevant External Links for RBMS2 Gene

HapMap Linkage Disequilibrium report
RBMS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RBMS2 Gene

Disorders for RBMS2 Gene

Relevant External Links for RBMS2

Genetic Association Database (GAD)
RBMS2
genes like me logo Genes that share disorders with RBMS2: view

No data available for UniProtKB/Swiss-Prot for RBMS2 Gene

Publications for RBMS2 Gene

  1. SCR: novel human suppressors of cdc2/cdc13 mutants of Schizosaccharomyces pombe harbour motifs for RNA binding proteins. (PMID: 8041632) Kanaoka Y. … Nojima H. (Nucleic Acids Res. 1994) 2 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals. (PMID: 22479202) Dastani Z. … Kathiresan S. (PLoS Genet. 2012) 3 48
  4. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3
  5. A census of human soluble protein complexes. (PMID: 22939629) Havugimana P.C. … Emili A. (Cell 2012) 3

Products for RBMS2 Gene

Sources for RBMS2 Gene

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