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RBM7 Gene

protein-coding   GIFtS: 49
GCID: GC11P114270

RNA Binding Motif Protein 7

  Search for RBM7
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
RNA Binding Motif Protein 71 2
RNA-Binding Protein 72
RNA-Binding Motif Protein 73

External Ids:    HGNC: 99041   Entrez Gene: 101792   Ensembl: ENSG000000760537   OMIM: 6124135   UniProtKB: Q9Y5803   

Export aliases for RBM7 gene to outside databases

Previous GC identifers: GC11P116624 GC11P115783 GC11P114305 GC11P113808 GC11P113776 GC11P110199


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for RBM7 Gene:
RBM7 (RNA binding motif protein 7) is a protein-coding gene. GO annotations related to this gene include RNA binding and nucleotide binding. An important paralog of this gene is RBM11.

UniProtKB/Swiss-Prot: RBM7_HUMAN, Q9Y580
Function: Possible involved in germ cell RNA processing and meiosis

Gene Wiki entry for RBM7 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000011.9  NC_018922.2  NT_033899.9  
Regulatory elements:
   Regulatory transcription factor binding sites in the RBM7 gene promoter:
         ATF-2   GCNF   CUTL1   GATA-1   MEF-2A   POU2F1   GCNF-1   POU2F1a   aMEF-2   c-Jun   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidRBM7 promoter sequence
   Search Chromatin IP Primers for RBM7

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat RBM7


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11q23.1-q23.2   Ensembl cytogenetic band:  11q23.2   HGNC cytogenetic band: 11q23.1-q23.2

RBM7 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RBM7 gene location

GeneLoc information about chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11P114270:  view genomic region     (about GC identifiers)

Start:
114,270,752 bp from pter      End:
114,284,925 bp from pter
Size:
14,174 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: RBM7_HUMAN, Q9Y580 (See protein sequence)
Recommended Name: RNA-binding protein 7  
Size: 266 amino acids; 30504 Da
Secondary accessions: B2R6K8 Q9NUT4

Explore the universe of human proteins at neXtProt for RBM7: NX_Q9Y580

Explore proteomics data for RBM7 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See RBM7 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins (5 alternative transcripts): 
    NP_001272974.1  NP_001272975.1  NP_001272976.1  NP_001272977.1  NP_057174.1  

    ENSEMBL proteins: 
     ENSP00000439918   ENSP00000364639   ENSP00000440949   ENSP00000437847   ENSP00000437998  
     ENSP00000440923   ENSP00000445848  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    RBM: RNA binding motif (RRM) containing

    2 InterPro protein domains:
     IPR012677 Nucleotide-bd_a/b_plait
     IPR000504 RRM_dom

    Graphical View of Domain Structure for InterPro Entry Q9Y580

    ProtoNet protein and cluster: Q9Y580

    1 Blocks protein domain: IPB000504 RNA-binding region RNP-1 (RNA recognition motif)

    UniProtKB/Swiss-Prot: RBM7_HUMAN, Q9Y580
    Similarity: Contains 1 RRM (RNA recognition motif) domain


    Find genes that share domains with RBM7           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: RBM7_HUMAN, Q9Y580
    Function: Possible involved in germ cell RNA processing and meiosis

         Gene Ontology (GO): 4 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000166nucleotide binding IEA--
    GO:0003676nucleic acid binding ----
    GO:0003723RNA binding ----
    GO:0044822poly(A) RNA binding IDA--
         
    Find genes that share ontologies with RBM7           About GenesLikeMe


    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for RBM7
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    miRNA
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    miRTarBase miRNAs that target RBM7:
    hsa-mir-149-5p (MIRT045565)

    Block miRNA regulation of human, mouse, rat RBM7 using miScript Target Protectors
    Selected qRT-PCR Assays for microRNAs that regulate RBM7 (see all 14):
    hsa-miR-4324 hsa-miR-125a-5p hsa-miR-4328 hsa-miR-488 hsa-miR-548aa hsa-miR-4282 hsa-miR-877* hsa-miR-582-5p
    SwitchGear 3'UTR luciferase reporter plasmidRBM7 3' UTR sequence
    Inhib. RNA
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytosol2
    nucleus2
    extracellular1

    Gene Ontology (GO): 2 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IDA--
    GO:0005730NOT nucleolus IDA--

    Find genes that share ontologies with RBM7           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for RBM7
    Interactions:

        GeneGlobe Interaction Network for RBM7

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    Selected Interacting proteins for RBM7 (Q9Y5802, 3 ENSP000003646394) via UniProtKB, MINT, STRING, and/or I2D (see all 578)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    SF3B2Q134352, 3, ENSP000003188614MINT-7947479 MINT-8333680 I2D: score=1 STRING: ENSP00000318861
    HNRNPKP619782, 3, ENSP000003654394MINT-7947479 I2D: score=4 STRING: ENSP00000365439
    PPP2R1AP301532, 3, ENSP000003248044MINT-7947479 I2D: score=2 STRING: ENSP00000324804
    KHDRBS1Q076662, ENSP000003138294MINT-8338245 MINT-7947479 STRING: ENSP00000313829
    KHDRBS3O755252, 3, ENSP000003481084MINT-67619 I2D: score=5 STRING: ENSP00000348108
    About this table

    Gene Ontology (GO): 1 biological process term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007126meiotic nuclear division IEA--

    Find genes that share ontologies with RBM7           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for RBM7



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for RBM7 gene (5 alternative transcripts): 
    NM_001286045.1  NM_001286046.1  NM_001286047.1  NM_001286048.1  NM_016090.3  

    Unigene Cluster for RBM7:

    RNA binding motif protein 7
    Hs.7527  [show with all ESTs]
    Unigene Representative Sequence: AB209753
    8 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000540163(uc001pov.3) ENST00000375490(uc001pox.3 uc001pow.3)
    ENST00000541475 ENST00000544313 ENST00000542140 ENST00000544582 ENST00000545678
    ENST00000538134
    miRNA
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    hsa-miR-4324 hsa-miR-125a-5p hsa-miR-4328 hsa-miR-488 hsa-miR-548aa hsa-miR-4282 hsa-miR-877* hsa-miR-582-5p
    SwitchGear 3'UTR luciferase reporter plasmidRBM7 3' UTR sequence
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    GenScript: all cDNA clones in your preferred vector: RBM7 (NM_016090)
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      QuantiTect SYBR Green Assays in human, mouse, rat RBM7
      QuantiFast Probe-based Assays in human, mouse, rat RBM7

    Additional mRNA sequence: 

    AB209753.1 AF156098.1 AK002015.1 AK225615.1 AK225667.1 AK312619.1 BC013320.1 BC034381.1 
    BC070262.1 

    11 DOTS entries:

    DT.313730  DT.100798217  DT.455447  DT.120750287  DT.87015940  DT.100798203  DT.120750303  DT.100719955 
    DT.100776799  DT.455027  DT.95367252 

    Selected AceView cDNA sequences (see all 477):

    AI804409 CK823391 BI850488 AW473916 AI583682 AI678337 BI491382 BP342537 
    BQ072673 AA454966 BM800248 AI188410 AF156098 CB990952 BC013320 AW299748 
    AI028092 BG678115 AV716688 CB138406 BM849789 CD673952 BQ955567 BF001680 

    GeneLoc Exon Structure

    5 Alternative Splicing Database (ASD) splice patterns (SP) for RBM7    About this scheme

    ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b · 2c ^ 3 ^ 4a · 4b ^ 5
    SP1:                                      -                           
    SP2:                                      -                           
    SP3:                                      -                           
    SP4:                                      -                           
    SP5:                                                                  


    ECgene alternative splicing isoforms for RBM7

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    RBM7 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TAATGGAGAT
    RBM7 Expression
    About this image

    RBM7 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    RBM7 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.7527

    UniProtKB/Swiss-Prot: RBM7_HUMAN, Q9Y580
    Tissue specificity: Ubiquitous

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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals.

    Orthologs for RBM7 gene from Selected species (see all 14)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Rbm71 , 5 RNA binding motif protein 71, 5 85.16(n)1
    83.77(a)1
      9 (26.43 cM)5
    670101  NM_144948.51  NP_659197.21 
     484887095 
    chicken
    (Gallus gallus)
    Aves RBM71 RNA binding motif protein 7 64.57(n)
    61.42(a)
      419760  NM_001006318.1  NP_001006318.1 
    lizard
    (Anolis carolinensis)
    Reptilia --
    Uncharacterized protein
    49(a)
    1 → many
    GL343705.1(28002-32556)
    African clawed frog
    (Xenopus laevis)
    Amphibia rbm7-prov2 RNA binding motif protein 7 80.6(n)    BC054991.1 
    zebrafish
    (Danio rerio)
    Actinopterygii wufa03f032 wufa03f03 74.31(n)   334784  BC049507.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG114546
    --
    22(a)
    1 → many
    2L(143309-144227)
    worm
    (Caenorhabditis elegans)
    Secernentea Y37D8A.216
    Protein Y37D8A.21 (Y37D8A.21) mRNA, complete cds
    23(a)
    1 → many
    III(12928379-12931867) WBGene00012558


    ENSEMBL Gene Tree for RBM7 (if available)
    TreeFam Gene Tree for RBM7 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for RBM7 gene
    RBM112  ENSG000002556632  
    6 SIMAP similar genes for RBM7 using alignment to 8 protein entries:     RBM7_HUMAN (see all proteins):
    RBMY1C    RBMY1A1    PABPC1    PABPC4    RBM11    TIAL1

    Find genes that share paralogs with RBM7           About GenesLikeMe


    1 Pseudogenes.org Pseudogene for RBM7
    PGOHUM00000240110


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for RBM7 (see all 127)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 11 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs2074723551,2
    Cuntested1114278001(+) TATGTA/GTCTTG 1 -- int10--------
    rs2009018761,2
    --114273510(+) TTAGAG/TTTTCT 1 -- int10--------
    rs175474941,2
    C,F,H--114273673(+) TTATCA/GGGAAT 1 -- int117Minor allele frequency- G:0.07NA NS EA CSA 1106
    rs1420072281,2
    --114273752(+) CTGCCA/GTTATT 1 -- int10--------
    rs1461396391,2
    --114273810(+) AATGTA/GTCTAT 1 -- int10--------
    rs1838361871,2
    --114273863(+) ACGTAC/TATAAC 1 -- int10--------
    rs1882772911,2
    --114274203(+) ATCTCG/TTCAGG 1 -- int10--------
    rs1918436901,2
    C--114274259(+) GCTTTA/GGGGAG 1 -- int10--------
    rs1167185351,2
    C--114274294(+) TTTCCC/TGGTAT 1 -- int10--------
    rs79299491,2
    C,F,A--114274493(+) ggttcA/Ggtggg 1 -- int11Minor allele frequency- G:0.03WA 118

    HapMap Linkage Disequilibrium report for RBM7 (114270752 - 114284925 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 1 variation for RBM7:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv898396CNV Gain21882294

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing RBM7
    DNA2.0 Custom Variant and Variant Library Synthesis for RBM7

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 612413    OMIM disorders: --


    Find genes that share disorders with RBM7           About GenesLikeMe


    Export disorders for RBM7 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for RBM7 gene, integrated from 10 sources (see all 27):
    (articles sorted by number of sources associating them with RBM7)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    3. Spermatogenetic expression of RNA-binding motif protein 7, a protein that interacts with splicing factors. (PubMed id 12634307)1, 2 Guo T.B.... Salameh W.A. (J. Androl. 2003)
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    5. The SOX2-interactome in brain cancer cells identifies the requirement of MSI2 and USP9X for the growth of brain tumor cells. (PubMed id 23667531)1 Cox J.L....Rizzino A. (PLoS ONE 2013)
    6. Pathway Analysis of ChIP-Seq-Based NRF1 Target Genes Suggests a Logical Hypothesis of their Involvement in the Pathogenesis of Neurodegenerative Diseases. (PubMed id 24250222)1 Satoh J....Yamamoto Y. (Gene Regul Syst Bio 2013)
    7. The protein interaction landscape of the human CMGC kinase group. (PubMed id 23602568)1 Varjosalo M....Gstaiger M. (Cell Rep 2013)
    8. DBIRD complex integrates alternative mRNA splicing with RNA polymerase II transcript elongation. (PubMed id 22446626)1 Close P.... Svejstrup J.Q. (Nature 2012)
    9. Dynamic protein-protein interaction wiring of the human spliceosome. (PubMed id 22365833)1 Hegele A....Stelzl U. (Mol. Cell 2012)
    10. Human CCAAT/enhancer-binding protein I^ interacts with chromatin remodeling complexes of the imitation switch subfamily. (PubMed id 22242598)1 Steinberg X.P....GutiAcrrez J.L. (Biochemistry 2012)

    (in PubMed, OMIM, and NCBI Bookshelf)
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 10179 HGNC: 9904 AceView: DKFZP566E144andRBM7 Ensembl:ENSG00000076053 euGenes: HUgn10179
    ECgene: RBM7 H-InvDB: RBM7

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for RBM7 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for RBM7 gene:
    Search GeneIP for patents involving RBM7

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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