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Aliases for RBM7 Gene

Aliases for RBM7 Gene

  • RNA Binding Motif Protein 7 2 3
  • RNA-Binding Motif Protein 7 4

External Ids for RBM7 Gene

Previous GeneCards Identifiers for RBM7 Gene

  • GC11P116624
  • GC11P115783
  • GC11P114305
  • GC11P113808
  • GC11P113776
  • GC11P110199
  • GC11P114270

Summaries for RBM7 Gene

GeneCards Summary for RBM7 Gene

RBM7 (RNA Binding Motif Protein 7) is a Protein Coding gene. GO annotations related to this gene include RNA binding and nucleotide binding. An important paralog of this gene is ENSG00000255663.

UniProtKB/Swiss-Prot for RBM7 Gene

  • Possible involved in germ cell RNA processing and meiosis

Gene Wiki entry for RBM7 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RBM7 Gene

Genomics for RBM7 Gene

Regulatory Elements for RBM7 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for RBM7 Gene

Start:
114,400,030 bp from pter
End:
114,414,203 bp from pter
Size:
14,174 bases
Orientation:
Plus strand

Genomic View for RBM7 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RBM7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RBM7 Gene

Proteins for RBM7 Gene

  • Protein details for RBM7 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y580-RBM7_HUMAN
    Recommended name:
    RNA-binding protein 7
    Protein Accession:
    Q9Y580
    Secondary Accessions:
    • B2R6K8
    • Q9NUT4

    Protein attributes for RBM7 Gene

    Size:
    266 amino acids
    Molecular mass:
    30504 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for RBM7 Gene

neXtProt entry for RBM7 Gene

Proteomics data for RBM7 Gene at MOPED

Post-translational modifications for RBM7 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for RBM7 Gene

Domains for RBM7 Gene

Gene Families for RBM7 Gene

HGNC:
  • RBM :RNA binding motif (RRM) containing

Protein Domains for RBM7 Gene

Suggested Antigen Peptide Sequences for RBM7 Gene

Graphical View of Domain Structure for InterPro Entry

Q9Y580

UniProtKB/Swiss-Prot:

RBM7_HUMAN :
  • Q9Y580
Domain:
  • Contains 1 RRM (RNA recognition motif) domain.
genes like me logo Genes that share domains with RBM7: view

Function for RBM7 Gene

Molecular function for RBM7 Gene

UniProtKB/Swiss-Prot Function: Possible involved in germ cell RNA processing and meiosis

Gene Ontology (GO) - Molecular Function for RBM7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000166 nucleotide binding IEA --
GO:0003676 nucleic acid binding --
GO:0044822 poly(A) RNA binding IDA 22658674
genes like me logo Genes that share ontologies with RBM7: view

Animal Model Products

CRISPR Products

miRNA for RBM7 Gene

miRTarBase miRNAs that target RBM7

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for RBM7 Gene

Localization for RBM7 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RBM7 Gene COMPARTMENTS Subcellular localization image for RBM7 gene
Compartment Confidence
cytosol 2
nucleus 2
extracellular 1

Gene Ontology (GO) - Cellular Components for RBM7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA --
GO:0005654 nucleoplasm IDA --
genes like me logo Genes that share ontologies with RBM7: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for RBM7 Gene

Pathways for RBM7 Gene

SuperPathways for RBM7 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RBM7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0051321 meiotic cell cycle IEA --
genes like me logo Genes that share ontologies with RBM7: view

No data available for Pathways by source for RBM7 Gene

Transcripts for RBM7 Gene

Unigene Clusters for RBM7 Gene

RNA binding motif protein 7:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RBM7

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RBM7 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b · 2c ^ 3 ^ 4a · 4b ^ 5
SP1: -
SP2: -
SP3: -
SP4: -
SP5:

Relevant External Links for RBM7 Gene

GeneLoc Exon Structure for
RBM7
ECgene alternative splicing isoforms for
RBM7

Expression for RBM7 Gene

mRNA expression in normal human tissues for RBM7 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for RBM7 Gene

SOURCE GeneReport for Unigene cluster for RBM7 Gene Hs.7527

mRNA Expression by UniProt/SwissProt for RBM7 Gene

Q9Y580-RBM7_HUMAN
Tissue specificity: Ubiquitous
genes like me logo Genes that share expressions with RBM7: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for RBM7 Gene

Orthologs for RBM7 Gene

This gene was present in the common ancestor of animals.

Orthologs for RBM7 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RBM7 35
  • 99.25 (n)
  • 99.25 (a)
RBM7 36
  • 99 (a)
OneToMany
cow
(Bos Taurus)
Mammalia RBM7 35
  • 90.46 (n)
  • 89.31 (a)
RBM7 36
  • 90 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 36
  • 90 (a)
OneToMany
RBM7 35
  • 89.06 (n)
  • 88.17 (a)
mouse
(Mus musculus)
Mammalia Rbm7 35
  • 85.16 (n)
  • 83.77 (a)
Rbm7 16
Rbm7 36
  • 84 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 75 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 66 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Rbm7 35
  • 83.42 (n)
  • 78.39 (a)
chicken
(Gallus gallus)
Aves RBM7 35
  • 64.57 (n)
  • 61.42 (a)
RBM7 36
  • 56 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 49 (a)
OneToMany
African clawed frog
(Xenopus laevis)
Amphibia rbm7-prov 35
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC101735152 35
  • 69.86 (n)
  • 68.49 (a)
Str.10735 35
zebrafish
(Danio rerio)
Actinopterygii RBM7 36
  • 43 (a)
OneToMany
wufa03f03 35
zgc:77304 35
  • 55.04 (n)
  • 49.36 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG11454 36
  • 22 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea Y37D8A.21 36
  • 23 (a)
OneToMany
Species with no ortholog for RBM7:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RBM7 Gene

ENSEMBL:
Gene Tree for RBM7 (if available)
TreeFam:
Gene Tree for RBM7 (if available)

Paralogs for RBM7 Gene

Paralogs for RBM7 Gene

Selected SIMAP similar genes for RBM7 Gene using alignment to 8 proteins:

Pseudogenes.org Pseudogenes for RBM7 Gene

genes like me logo Genes that share paralogs with RBM7: view

Variants for RBM7 Gene

Sequence variations from dbSNP and Humsavar for RBM7 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs13725 -- 114,410,019(+) atcca(C/G)agtgc utr-variant-3-prime
rs479717 -- 114,408,899(+) TACTG(A/G)AAATA utr-variant-3-prime
rs481649 -- 114,409,112(+) TAGCT(G/T)GGAGT utr-variant-3-prime
rs494260 -- 114,406,729(+) TTGTT(C/T)ACTGC intron-variant
rs535722 -- 114,410,350(+) CCTTT(A/G)TACTT utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for RBM7 Gene

Variant ID Type Subtype PubMed ID
nsv898396 CNV Gain 21882294

Relevant External Links for RBM7 Gene

HapMap Linkage Disequilibrium report
RBM7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RBM7 Gene

Disorders for RBM7 Gene

No disorders were found for RBM7 Gene.

No data available for UniProtKB/Swiss-Prot for RBM7 Gene

Publications for RBM7 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. Spermatogenetic expression of RNA-binding motif protein 7, a protein that interacts with splicing factors. (PMID: 12634307) Guo T.B. … Salameh W.A. (J. Androl. 2003) 3 4
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  5. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3

Products for RBM7 Gene

Sources for RBM7 Gene

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