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Aliases for RBM5-AS1 Gene

Subcategory (RNA class) for RBM5-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for RBM5-AS1 Gene

  • RBM5 Antisense RNA 1 2 3 5
  • LUCA-15-Specific Transcript 2 3
  • LUST 3

External Ids for RBM5-AS1 Gene

ORGUL Members for RBM5-AS1 Gene

Previous GeneCards Identifiers for RBM5-AS1 Gene

  • GC03U901894

Summaries for RBM5-AS1 Gene

Entrez Gene Summary for RBM5-AS1 Gene

  • This gene produces a non-coding RNA in antisense to the RNA binding motif protein 5 (RBM5) gene. This transcript interacts with beta catenin and may regulate expression of WNT target genes. [provided by RefSeq, Sep 2016]

GeneCards Summary for RBM5-AS1 Gene

RBM5-AS1 (RBM5 Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

Additional gene information for RBM5-AS1 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RBM5-AS1 Gene

Genomics for RBM5-AS1 Gene

GeneHancer (GH) Regulatory Elements for RBM5-AS1 Gene

Promoters and enhancers for RBM5-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I050100 Enhancer 0.4 ENCODE 550.8 -0.2 -189 1.2 PAF1 EZH2 RBM5-AS1 RBM6 SEMA3F SEMA3F-AS1 MON1A RBM5
GH03I050088 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.4 +11.4 11426 2.5 HDGF PKNOX1 ATF1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF48 YY1 RBM5 RBM6 DOCK3 LAMB2 RBM5-AS1
GH03I050138 Enhancer 1 Ensembl ENCODE dbSUPER 0.3 -38.3 -38270 2.1 MAZ NFIA ZNF398 ZBTB8A OSR2 ZNF335 GLIS2 ZNF692 ZNF341 PRDM10 RBM6 CDHR4 SEMA3F SEMA3F-AS1 RBM5-AS1
GH03I050121 Enhancer 0.8 ENCODE 0.3 -21.1 -21097 0.4 HDGF CTCF ZNF792 SIN3A KMT2B RAD21 ZFHX2 GATA3 POLR2A ARID2 RBM6 RBM5-AS1 SEMA3F SEMA3F-AS1
GH03I050122 Enhancer 0.8 ENCODE 0.3 -20.5 -20458 0.8 HDGF SIN3A ZNF48 RAD21 ARID2 ZNF143 BCLAF1 RUNX3 MIXL1 DEK RBM6 RBM5-AS1 SEMA3F SEMA3F-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RBM5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RBM5-AS1 Gene

Genomic Locations for RBM5-AS1 Gene
chr3:50,099,603-50,100,988
(GRCh38/hg38)
Size:
1,386 bases
Orientation:
Minus strand

Genomic View for RBM5-AS1 Gene

Genes around RBM5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RBM5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RBM5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RBM5-AS1 Gene

Proteins for RBM5-AS1 Gene

Post-translational modifications for RBM5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RBM5-AS1 Gene

Domains & Families for RBM5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RBM5-AS1 Gene

Function for RBM5-AS1 Gene

Phenotypes From GWAS Catalog for RBM5-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RBM5-AS1 Gene

Localization for RBM5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RBM5-AS1 Gene

Pathways & Interactions for RBM5-AS1 Gene

SuperPathways for RBM5-AS1 Gene

No Data Available

Interacting Proteins for RBM5-AS1 Gene

Gene Ontology (GO) - Biological Process for RBM5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RBM5-AS1 Gene

Drugs & Compounds for RBM5-AS1 Gene

No Compound Related Data Available

Transcripts for RBM5-AS1 Gene

mRNA/cDNA for RBM5-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RBM5-AS1 Gene

No ASD Table

Relevant External Links for RBM5-AS1 Gene

GeneLoc Exon Structure for
RBM5-AS1
ECgene alternative splicing isoforms for
RBM5-AS1

Expression for RBM5-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RBM5-AS1 Gene

Orthologs for RBM5-AS1 Gene

Evolution for RBM5-AS1 Gene

ENSEMBL:
Gene Tree for RBM5-AS1 (if available)
TreeFam:
Gene Tree for RBM5-AS1 (if available)

No data available for Orthologs for RBM5-AS1 Gene

Paralogs for RBM5-AS1 Gene

No data available for Paralogs for RBM5-AS1 Gene

Variants for RBM5-AS1 Gene

Sequence variations from dbSNP and Humsavar for RBM5-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000069144 -- 50,102,293(-) C/G upstream_transcript_variant
rs1000712859 -- 50,100,991(-) A/G upstream_transcript_variant
rs1000851865 -- 50,102,581(-) C/G/T upstream_transcript_variant
rs1002048388 -- 50,102,124(-) C/T upstream_transcript_variant
rs1002100691 -- 50,101,636(-) G/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for RBM5-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv515986 CNV loss 19592680
nsv590249 CNV loss 21841781
nsv834690 CNV loss 17160897

Additional Variant Information for RBM5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RBM5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RBM5-AS1 Gene

Disorders for RBM5-AS1 Gene

Additional Disease Information for RBM5-AS1

No disorders were found for RBM5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RBM5-AS1 Gene

Publications for RBM5-AS1 Gene

  1. Identification and characterisation of a novel antisense non-coding RNA from the RBM5 gene locus. (PMID: 19559772) Rintala-Maki ND … Sutherland LC (Gene 2009) 2 3 58
  2. LUCA-15-encoded sequence variants regulate CD95-mediated apoptosis. (PMID: 10949932) Sutherland LC … Williams GT (Oncogene 2000) 2 3 58
  3. RBM5-AS1 Is Critical for Self-Renewal of Colon Cancer Stem-like Cells. (PMID: 27520449) Di Cecilia S … Walsh MJ (Cancer research 2016) 3 58
  4. lncRNAdb: a reference database for long noncoding RNAs. (PMID: 21112873) Amaral PP … Mattick JS (Nucleic acids research 2011) 3 58

Products for RBM5-AS1 Gene

Sources for RBM5-AS1 Gene

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