Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RBM5-AS1 Gene

Subcategory (RNA class) for RBM5-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for RBM5-AS1 Gene

  • RBM5 Antisense RNA 1 2 3 5
  • LUCA-15-Specific Transcript 2 3
  • LUST 3

External Ids for RBM5-AS1 Gene

ORGUL Members for RBM5-AS1 Gene

Previous GeneCards Identifiers for RBM5-AS1 Gene

  • GC03U901894

Summaries for RBM5-AS1 Gene

Entrez Gene Summary for RBM5-AS1 Gene

  • This gene produces a non-coding RNA in antisense to the RNA binding motif protein 5 (RBM5) gene. This transcript interacts with beta catenin and may regulate expression of WNT target genes. [provided by RefSeq, Sep 2016]

GeneCards Summary for RBM5-AS1 Gene

RBM5-AS1 (RBM5 Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RBM5-AS1 Gene

Genomics for RBM5-AS1 Gene

Regulatory Elements for RBM5-AS1 Gene

Enhancers for RBM5-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F050100 0.6 ENCODE 0.8 -0.2 -190 1.2 PAF1 OSR2 GLIS2 MAZ ZNF692 ZBTB8A PRDM10 RBM6 SEMA3F SEMA3F-AS1 MON1A RBM5-AS1
GH03F050088 1 ENCODE 0.4 +11.4 11427 2.5 HDGF PKNOX1 WRNIP1 ARID4B SIN3A DMAP1 ZNF48 ETS1 YY1 GTF3C2 RBM6 TMEM115 LAMB2 QRICH1 CCDC71 SEMA3F-AS1 RHOA-IT1 HEMK1 DAG1 IFRD2
GH03F050123 1 Ensembl ENCODE 0.3 -24.6 -24613 4.0 KLF1 TEAD4 ZMYM3 SIN3A ZIC2 TEAD3 GATA3 POLR2A PRDM10 ZNF263 RBM6 SEMA3F-AS1 RBM5-AS1 SEMA3F
GH03F050134 1 FANTOM5 0.3 -33.3 -33314 0.0 MLX ZFP64 ARID4B DMAP1 ZNF48 SLC30A9 SP5 NFYC MXD4 ZHX2 GNAT1 SEMA3F RBM5-AS1
GH03F050137 1 Ensembl ENCODE 0.3 -38.1 -38070 2.5 USF1 RAD21 YY1 GLIS2 FOS PRDM10 ZNF263 MAZ NFIA MNT RBM6 CDHR4 SEMA3F RBM5-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RBM5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for RBM5-AS1 Gene

Chromosome:
3
Start:
50,099,603 bp from pter
End:
50,100,988 bp from pter
Size:
1,386 bases
Orientation:
Minus strand

Genomic View for RBM5-AS1 Gene

Genes around RBM5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RBM5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RBM5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RBM5-AS1 Gene

Proteins for RBM5-AS1 Gene

Post-translational modifications for RBM5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RBM5-AS1 Gene

Domains & Families for RBM5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RBM5-AS1 Gene

Function for RBM5-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RBM5-AS1 Gene

Localization for RBM5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RBM5-AS1 Gene

Pathways & Interactions for RBM5-AS1 Gene

SuperPathways for RBM5-AS1 Gene

No Data Available

Interacting Proteins for RBM5-AS1 Gene

Gene Ontology (GO) - Biological Process for RBM5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RBM5-AS1 Gene

Transcripts for RBM5-AS1 Gene

mRNA/cDNA for RBM5-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RBM5-AS1 Gene

No ASD Table

Relevant External Links for RBM5-AS1 Gene

GeneLoc Exon Structure for
RBM5-AS1
ECgene alternative splicing isoforms for
RBM5-AS1

Expression for RBM5-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RBM5-AS1 Gene

Orthologs for RBM5-AS1 Gene

Evolution for RBM5-AS1 Gene

ENSEMBL:
Gene Tree for RBM5-AS1 (if available)
TreeFam:
Gene Tree for RBM5-AS1 (if available)

No data available for Orthologs for RBM5-AS1 Gene

Paralogs for RBM5-AS1 Gene

No data available for Paralogs for RBM5-AS1 Gene

Variants for RBM5-AS1 Gene

Sequence variations from dbSNP and Humsavar for RBM5-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs10599830 -- 50,101,151(+) TCTAG(-/TTAG)AGTGG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs111484530 -- 50,099,920(+) TTCCT(A/G)TTCCA intron-variant, nc-transcript-variant
rs112093695 -- 50,100,399(+) CCAAG(C/T)CAAGT intron-variant, nc-transcript-variant, utr-variant-5-prime
rs115871263 -- 50,102,353(+) TTCCT(A/G)CCCCC intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs116458104 -- 50,101,718(+) CTCCT(A/G)AGAAA intron-variant, upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for RBM5-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv834690 CNV loss 17160897
nsv590249 CNV loss 21841781
nsv515986 CNV loss 19592680

Relevant External Links for RBM5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RBM5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RBM5-AS1 Gene

Disorders for RBM5-AS1 Gene

Relevant External Links for RBM5-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RBM5-AS1

No disorders were found for RBM5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RBM5-AS1 Gene

Publications for RBM5-AS1 Gene

  1. Identification and characterisation of a novel antisense non-coding RNA from the RBM5 gene locus. (PMID: 19559772) Rintala-Maki N.D. … Sutherland L.C. (Gene 2009) 2 3 64
  2. LUCA-15-encoded sequence variants regulate CD95-mediated apoptosis. (PMID: 10949932) Sutherland L.C. … Williams G.T. (Oncogene 2000) 2 3 64
  3. RBM5-AS1 Is Critical for Self-Renewal of Colon Cancer Stem-like Cells. (PMID: 27520449) Di Cecilia S. … Walsh M.J. (Cancer Res. 2016) 3 64
  4. lncRNAdb: a reference database for long noncoding RNAs. (PMID: 21112873) Amaral P.P. … Mattick J.S. (Nucleic Acids Res. 2011) 3 64

Products for RBM5-AS1 Gene

Sources for RBM5-AS1 Gene

Content
Loading form....