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Aliases for RBM5-AS1 Gene

Subcategory (RNA class) for RBM5-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for RBM5-AS1 Gene

  • RBM5 Antisense RNA 1 2 3 5
  • LUCA-15-Specific Transcript 2 3
  • LUST 3

External Ids for RBM5-AS1 Gene

ORGUL Members for RBM5-AS1 Gene

Previous GeneCards Identifiers for RBM5-AS1 Gene

  • GC03U901894

Summaries for RBM5-AS1 Gene

Entrez Gene Summary for RBM5-AS1 Gene

  • This gene produces a non-coding RNA in antisense to the RNA binding motif protein 5 (RBM5) gene. This transcript interacts with beta catenin and may regulate expression of WNT target genes. [provided by RefSeq, Sep 2016]

GeneCards Summary for RBM5-AS1 Gene

RBM5-AS1 (RBM5 Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

Additional gene information for RBM5-AS1 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RBM5-AS1 Gene

Genomics for RBM5-AS1 Gene

Regulatory Elements for RBM5-AS1 Gene

Enhancers for RBM5-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H050088 1 ENCODE 0.4 +11.4 11427 2 HDGF PKNOX1 ATF1 ARNT ARID4B SIN3A DMAP1 YY1 ETS1 GTF3C2 RBM6 QRICH1 USP19 TMEM115 QARS SEMA3F-AS1 RBM5 RHOA-IT1 CCDC71 GMPPB
GH03H050138 1.1 Ensembl ENCODE dbSUPER 0.3 -38.3 -38271 2 OSR2 MAZ GLIS2 NFIA ZNF692 ZNF341 PRDM10 ZBTB8A ZNF398 RBM6 CDHR4 SEMA3F RBM5-AS1
GH03H050100 0.4 ENCODE 0.7 -0.2 -190 1 PAF1 EZH2 RBM6 SEMA3F SEMA3F-AS1 MON1A RBM5-AS1
GH03H050149 1.4 Ensembl ENCODE dbSUPER 0.2 -50.1 -50074 2 ELF3 FOXA2 NFIB SIN3A ZBTB7B RARA SLC30A9 RCOR1 THAP11 SP5 RBM6 CYB561D2 CCDC36 SEMA3F RBM5-AS1
GH03H050126 0.9 ENCODE dbSUPER 0.3 -25.7 -25652 1 ZNF398 TEAD3 FOXA1 GATA3 POLR2A BCL6B GLIS1 PRDM10 BCL6 SEMA3F-AS1 SEMA3F RBM5-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RBM5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for RBM5-AS1 Gene

Chromosome:
3
Start:
50,099,603 bp from pter
End:
50,100,988 bp from pter
Size:
1,386 bases
Orientation:
Minus strand

Genomic View for RBM5-AS1 Gene

Genes around RBM5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RBM5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RBM5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RBM5-AS1 Gene

Proteins for RBM5-AS1 Gene

Post-translational modifications for RBM5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RBM5-AS1 Gene

Domains & Families for RBM5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RBM5-AS1 Gene

Function for RBM5-AS1 Gene

Phenotypes From GWAS Catalog for RBM5-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RBM5-AS1 Gene

Localization for RBM5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RBM5-AS1 Gene

Pathways & Interactions for RBM5-AS1 Gene

SuperPathways for RBM5-AS1 Gene

No Data Available

Interacting Proteins for RBM5-AS1 Gene

Gene Ontology (GO) - Biological Process for RBM5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RBM5-AS1 Gene

Drugs & Compounds for RBM5-AS1 Gene

No Compound Related Data Available

Transcripts for RBM5-AS1 Gene

mRNA/cDNA for RBM5-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RBM5-AS1 Gene

No ASD Table

Relevant External Links for RBM5-AS1 Gene

GeneLoc Exon Structure for
RBM5-AS1
ECgene alternative splicing isoforms for
RBM5-AS1

Expression for RBM5-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RBM5-AS1 Gene

Orthologs for RBM5-AS1 Gene

Evolution for RBM5-AS1 Gene

ENSEMBL:
Gene Tree for RBM5-AS1 (if available)
TreeFam:
Gene Tree for RBM5-AS1 (if available)

No data available for Orthologs for RBM5-AS1 Gene

Paralogs for RBM5-AS1 Gene

No data available for Paralogs for RBM5-AS1 Gene

Variants for RBM5-AS1 Gene

Sequence variations from dbSNP and Humsavar for RBM5-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000069144 -- 50,102,293(+) AAGTC(C/G)TTGTA intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1000712859 -- 50,100,991(+) TTTTT(A/G)TAAGT intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1000851865 -- 50,102,581(+) CCCCC(C/G/T)AAAGG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1002048388 -- 50,102,124(+) AACCA(C/T)CTACT intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1002100691 -- 50,101,636(+) TTCAT(C/G)TGAGT intron-variant, upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for RBM5-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv515986 CNV loss 19592680
nsv590249 CNV loss 21841781
nsv834690 CNV loss 17160897

Relevant External Links for RBM5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RBM5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RBM5-AS1 Gene

Disorders for RBM5-AS1 Gene

Relevant External Links for RBM5-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RBM5-AS1

No disorders were found for RBM5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RBM5-AS1 Gene

Publications for RBM5-AS1 Gene

  1. Identification and characterisation of a novel antisense non-coding RNA from the RBM5 gene locus. (PMID: 19559772) Rintala-Maki ND … Sutherland LC (Gene 2009) 2 3 60
  2. LUCA-15-encoded sequence variants regulate CD95-mediated apoptosis. (PMID: 10949932) Sutherland LC … Williams GT (Oncogene 2000) 2 3 60
  3. RBM5-AS1 Is Critical for Self-Renewal of Colon Cancer Stem-like Cells. (PMID: 27520449) Di Cecilia S … Walsh MJ (Cancer research 2016) 3 60
  4. lncRNAdb: a reference database for long noncoding RNAs. (PMID: 21112873) Amaral PP … Mattick JS (Nucleic acids research 2011) 3 60

Products for RBM5-AS1 Gene

Sources for RBM5-AS1 Gene

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