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Aliases for RBM48 Gene

Aliases for RBM48 Gene

  • RNA Binding Motif Protein 48 2 3
  • C7orf64 3 4
  • Chromosome 7 Open Reading Frame 64 2
  • UPF0712 Protein C7orf64 3
  • RNA-Binding Protein 48 3
  • DKFZP564O0523 3
  • HSPC304 3

External Ids for RBM48 Gene

Previous Symbols for RBM48 Gene

  • C7orf64

Summaries for RBM48 Gene

GeneCards Summary for RBM48 Gene

RBM48 (RNA Binding Motif Protein 48) is a Protein Coding gene. GO annotations related to this gene include RNA binding.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RBM48 Gene

Genomics for RBM48 Gene

Genomic Location for RBM48 Gene

Start:
92,528,768 bp from pter
End:
92,538,005 bp from pter
Size:
9,238 bases
Orientation:
Plus strand

Genomic View for RBM48 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RBM48 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RBM48 Gene

No data available for Regulatory Elements for RBM48 Gene

Proteins for RBM48 Gene

  • Protein details for RBM48 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5RL73-RBM48_HUMAN
    Recommended name:
    RNA-binding protein 48
    Protein Accession:
    Q5RL73
    Secondary Accessions:
    • B7Z2K5
    • B7ZL51
    • Q5H9T2
    • Q8IYW7
    • Q96NS0
    • Q9H0V7

    Protein attributes for RBM48 Gene

    Size:
    367 amino acids
    Molecular mass:
    41808 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH33561.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=BAB70806.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=CAB66554.1; Type=Frameshift; Positions=341; Evidence={ECO:0000305}; Sequence=CAI45942.1; Type=Erroneous translation; Note=The protein sequence does not correspond to the translation of the nucleic acid sequence.; Evidence={ECO:0000305}; Sequence=EAL24148.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for RBM48 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RBM48 Gene

Proteomics data for RBM48 Gene at MOPED

Post-translational modifications for RBM48 Gene

No Post-translational modifications

Other Protein References for RBM48 Gene

No data available for DME Specific Peptides for RBM48 Gene

Domains for RBM48 Gene

Gene Families for RBM48 Gene

HGNC:
  • RBM :RNA binding motif (RRM) containing

Protein Domains for RBM48 Gene

ProtoNet:

UniProtKB/Swiss-Prot:

RBM48_HUMAN
Domain:
  • Contains 1 RRM (RNA recognition motif) domain.:
    • Q5RL73
Family:
  • Belongs to the RBM48 family.:
    • Q5RL73
genes like me logo Genes that share domains with RBM48: view

Function for RBM48 Gene

Gene Ontology (GO) - Molecular Function for RBM48 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000166 nucleotide binding --
GO:0003723 RNA binding IEA --
genes like me logo Genes that share ontologies with RBM48: view

Phenotypes for RBM48 Gene

GenomeRNAi human phenotypes for RBM48:
genes like me logo Genes that share phenotypes with RBM48: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RBM48 Gene

Localization for RBM48 Gene

Gene Ontology (GO) - Cellular Components for RBM48 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus --
GO:0005654 nucleoplasm IDA --
genes like me logo Genes that share ontologies with RBM48: view

Pathways for RBM48 Gene

SuperPathways for RBM48 Gene

No Data Available

Interacting Proteins for RBM48 Gene

Gene Ontology (GO) - Biological Process for RBM48 Gene

None

No data available for Pathways by source for RBM48 Gene

Transcripts for RBM48 Gene

Unigene Clusters for RBM48 Gene

RNA binding motif protein 48:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RBM48 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3a · 3b · 3c ^ 4 ^ 5
SP1: -
SP2:
SP3:

Relevant External Links for RBM48 Gene

GeneLoc Exon Structure for
RBM48
ECgene alternative splicing isoforms for
RBM48

Expression for RBM48 Gene

mRNA expression in normal human tissues for RBM48 Gene

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for RBM48 Gene

SOURCE GeneReport for Unigene cluster for RBM48 Gene Hs.21590

genes like me logo Genes that share expressions with RBM48: view

Orthologs for RBM48 Gene

This gene was present in the common ancestor of animals.

Orthologs for RBM48 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RBM48 36
  • 98.73 (n)
  • 98.64 (a)
RBM48 37
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RBM48 36
  • 83.79 (n)
  • 76.8 (a)
RBM48 37
  • 77 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RBM48 36
  • 87.92 (n)
  • 83.92 (a)
RBM48 37
  • 84 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rbm48 36
  • 78.38 (n)
  • 71.93 (a)
Rbm48 16
Rbm48 37
  • 64 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia RBM48 37
  • 61 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RBM48 37
  • 45 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rbm48 36
  • 79.47 (n)
  • 73.3 (a)
chicken
(Gallus gallus)
Aves C2H7ORF64 36
  • 60.02 (n)
  • 56.25 (a)
RBM48 37
  • 53 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RBM48 37
  • 49 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.9219 36
tropical clawed frog
(Silurana tropicalis)
Amphibia rbm48 36
  • 57.75 (n)
  • 52.35 (a)
Str.3657 36
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.3492 36
zebrafish
(Danio rerio)
Actinopterygii Dr.23171 36
rbm48 36
  • 54.7 (n)
  • 48.37 (a)
rbm48 37
  • 43 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP003741 36
  • 46.01 (n)
  • 42.98 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG34231 36
  • 50.63 (n)
  • 45.11 (a)
CG34231 37
  • 42 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 31 (a)
OneToOne
Species with no ortholog for RBM48:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RBM48 Gene

ENSEMBL:
Gene Tree for RBM48 (if available)
TreeFam:
Gene Tree for RBM48 (if available)

Paralogs for RBM48 Gene

Selected SIMAP similar genes for RBM48 Gene using alignment to 3 proteins:

Pseudogenes.org Pseudogenes for RBM48 Gene

genes like me logo Genes that share paralogs with RBM48: view

No data available for Paralogs for RBM48 Gene

Variants for RBM48 Gene

Sequence variations from dbSNP and Humsavar for RBM48 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs6964848 -- 92,533,221(+) ATCTG(C/T)AGACA intron-variant
rs6964956 -- 92,533,121(+) TGCCT(C/G)TTCTA intron-variant
rs6973293 -- 92,530,711(+) acaag(G/T)atcac intron-variant
rs10227452 -- 92,533,629(+) TTCAT(C/T)TGCAG intron-variant
rs10227835 -- 92,533,958(+) atact(C/T)tgaaa intron-variant

Relevant External Links for RBM48 Gene

HapMap Linkage Disequilibrium report
RBM48

No data available for Structural Variations from Database of Genomic Variants (DGV) for RBM48 Gene

Disorders for RBM48 Gene

No disorders were found for RBM48 Gene.

No data available for UniProtKB/Swiss-Prot for RBM48 Gene

Publications for RBM48 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 3 4
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  4. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3
  5. A protein interaction network links GIT1, an enhancer of huntingtin aggregation, to Huntington's disease. (PMID: 15383276) Goehler H. … Wanker E.E. (Mol. Cell 2004) 3

Products for RBM48 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate RBM48
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for RBM48
    • Block miRNA regulation of RBM48 using miScript Target Protectors

    Sources for RBM48 Gene

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