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Aliases for RBM47 Gene

Aliases for RBM47 Gene

  • RNA Binding Motif Protein 47 2 3 5
  • RNA-Binding Motif Protein 47 3 4
  • NET18 3

External Ids for RBM47 Gene

Previous GeneCards Identifiers for RBM47 Gene

  • GC04M040121
  • GC04M039747

Summaries for RBM47 Gene

GeneCards Summary for RBM47 Gene

RBM47 (RNA Binding Motif Protein 47) is a Protein Coding gene. GO annotations related to this gene include nucleic acid binding and nucleotide binding. An important paralog of this gene is HNRNPR.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RBM47 Gene

Genomics for RBM47 Gene

Regulatory Elements for RBM47 Gene

Enhancers for RBM47 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around RBM47 on UCSC Golden Path with GeneCards custom track

Genomic Location for RBM47 Gene

40,423,255 bp from pter
40,630,875 bp from pter
207,621 bases
Minus strand

Genomic View for RBM47 Gene

Genes around RBM47 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RBM47 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RBM47 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RBM47 Gene

Proteins for RBM47 Gene

  • Protein details for RBM47 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    RNA-binding protein 47
    Protein Accession:
    Secondary Accessions:
    • A0PJK2
    • B5MED4
    • Q8NI52
    • Q8NI53
    • Q9NXG3

    Protein attributes for RBM47 Gene

    593 amino acids
    Molecular mass:
    64099 Da
    Quaternary structure:
    No Data Available
    • Sequence=AAM21973.1; Type=Frameshift; Positions=561, 577; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for RBM47 Gene

    Alternative splice isoforms for RBM47 Gene


neXtProt entry for RBM47 Gene

Proteomics data for RBM47 Gene at MOPED

Post-translational modifications for RBM47 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for RBM47 Gene

Domains & Families for RBM47 Gene

Gene Families for RBM47 Gene

Protein Domains for RBM47 Gene

Graphical View of Domain Structure for InterPro Entry



  • Contains 3 RRM (RNA recognition motif) domains.
  • Belongs to the RRM RBM47 family.
  • Contains 3 RRM (RNA recognition motif) domains.
  • Belongs to the RRM RBM47 family.
genes like me logo Genes that share domains with RBM47: view

Function for RBM47 Gene

Gene Ontology (GO) - Molecular Function for RBM47 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000166 nucleotide binding IEA --
GO:0003676 nucleic acid binding IEA --
GO:0003723 RNA binding IEA --
GO:0044822 poly(A) RNA binding IDA 22658674
genes like me logo Genes that share ontologies with RBM47: view
genes like me logo Genes that share phenotypes with RBM47: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RBM47 Gene

Localization for RBM47 Gene

Subcellular locations from UniProtKB/Swiss-Prot for RBM47 Gene

Subcellular locations from

Jensen Localization Image for RBM47 Gene COMPARTMENTS Subcellular localization image for RBM47 gene
Compartment Confidence
nucleus 5
cytosol 2
peroxisome 1

No data available for Gene Ontology (GO) - Cellular Components for RBM47 Gene

Pathways & Interactions for RBM47 Gene

SuperPathways for RBM47 Gene

No Data Available

Interacting Proteins for RBM47 Gene

Gene Ontology (GO) - Biological Process for RBM47 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016554 cytidine to uridine editing IEA --
genes like me logo Genes that share ontologies with RBM47: view

No data available for Pathways by source and SIGNOR curated interactions for RBM47 Gene

Drugs & Compounds for RBM47 Gene

No Compound Related Data Available

Transcripts for RBM47 Gene

Unigene Clusters for RBM47 Gene

RNA binding motif protein 47:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RBM47 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b · 6c ^ 7 ^ 8a · 8b ^ 9
SP1: - - - - -
SP2: -
SP3: - -
SP4: -
SP6: -

Relevant External Links for RBM47 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RBM47 Gene

mRNA expression in normal human tissues for RBM47 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for RBM47 Gene

This gene is overexpressed in Colon - Transverse (x4.9), Adrenal Gland (x4.5), and Whole Blood (x4.0).

Protein differential expression in normal tissues from HIPED for RBM47 Gene

This gene is overexpressed in Cervix (17.2) and Salivary gland (10.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for RBM47 Gene

SOURCE GeneReport for Unigene cluster for RBM47 Gene Hs.518727

genes like me logo Genes that share expression patterns with RBM47: view

Protein tissue co-expression partners for RBM47 Gene

Primer Products

No data available for mRNA Expression by UniProt/SwissProt for RBM47 Gene

Orthologs for RBM47 Gene

This gene was present in the common ancestor of animals.

Orthologs for RBM47 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia RBM47 35
  • 92.02 (n)
  • 96.6 (a)
DKFZP686F02235 36
  • 98 (a)
(Canis familiaris)
Mammalia RBM47 35
  • 91.65 (n)
  • 94.18 (a)
RBM47 36
  • 94 (a)
(Mus musculus)
Mammalia Rbm47 35
  • 87.41 (n)
  • 94.73 (a)
Rbm47 16
Rbm47 36
  • 95 (a)
(Pan troglodytes)
Mammalia RBM47 35
  • 99.44 (n)
  • 99.83 (a)
RBM47 36
  • 100 (a)
(Rattus norvegicus)
Mammalia Rbm47 35
  • 86.62 (n)
  • 94.73 (a)
(Monodelphis domestica)
Mammalia -- 36
  • 92 (a)
-- 36
  • 82 (a)
-- 36
  • 82 (a)
(Ornithorhynchus anatinus)
Mammalia RBM47 36
  • 89 (a)
(Gallus gallus)
Aves RBM47 35
  • 80.17 (n)
  • 91.53 (a)
RBM47 36
  • 91 (a)
(Anolis carolinensis)
Reptilia RBM47 36
  • 87 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia rbm47 35
  • 70.63 (n)
  • 87.04 (a)
(Danio rerio)
Actinopterygii rbm47 35
  • 73.08 (n)
  • 80.21 (a)
RBM47 36
  • 78 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG17838 36
  • 28 (a)
(Caenorhabditis elegans)
Secernentea hrp-2 36
  • 29 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 50 (a)
Species with no ortholog for RBM47:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RBM47 Gene

Gene Tree for RBM47 (if available)
Gene Tree for RBM47 (if available)

Paralogs for RBM47 Gene

Paralogs for RBM47 Gene

genes like me logo Genes that share paralogs with RBM47: view

Variants for RBM47 Gene

Sequence variations from dbSNP and Humsavar for RBM47 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs278981 - 40,425,993(-) CCGCC(A/G)TGTAT reference, missense
rs35529250 - 40,426,074(+) GGCCC(C/G/T)GTAGA reference, missense
rs11660 -- 40,424,012(+) TGTTA(C/G)CGGTG utr-variant-3-prime
rs166777 -- 40,430,571(-) TCAGT(A/G)TGTCA intron-variant
rs175914 -- 40,462,188(-) GAATA(C/T)TGAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RBM47 Gene

Variant ID Type Subtype PubMed ID
nsv829910 CNV Loss 17160897
esv2661897 CNV Deletion 23128226
dgv1613e1 CNV Complex 17122850
nsv10482 CNV Loss 18304495
dgv935e199 CNV Deletion 23128226
nsv10484 CNV Loss 18304495
dgv936e199 CNV Deletion 23128226

Variation tolerance for RBM47 Gene

Residual Variation Intolerance Score: 15.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.12; 38.58% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for RBM47 Gene

Disorders for RBM47 Gene

Relevant External Links for RBM47

Genetic Association Database (GAD)
Human Genome Epidemiology (HuGE) Navigator
Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for RBM47 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RBM47 Gene

Publications for RBM47 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 48 67
  2. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3
  3. The central role of EED in the orchestration of polycomb group complexes. (PMID: 24457600) Cao Q. … Chinnaiyan A.M. (Nat Commun 2014) 3
  4. Loss of the multifunctional RNA-binding protein RBM47 as a source of selectable metastatic traits in breast cancer. (PMID: 24898756) Vanharanta S. … MassaguAc J. (Elife 2014) 3
  5. Genome-wide association studies and heritability estimates of body mass index related phenotypes in Bangladeshi adults. (PMID: 25133637) Scannell Bryan M. … Ahsan H. (PLoS ONE 2014) 3

Products for RBM47 Gene

Sources for RBM47 Gene