Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

RBM47 Gene

protein-coding   GIFtS: 50
GCID: GC04M040425

RNA Binding Motif Protein 47

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
RNA Binding Motif Protein 471 2
RNA-Binding Motif Protein 472 3
NET182
RNA-Binding Protein 472

External Ids:    HGNC: 303581   Entrez Gene: 545022   Ensembl: ENSG000001636947   UniProtKB: A0AV963   

Export aliases for RBM47 gene to outside databases

Previous GC identifers: GC04M040121 GC04M039747


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for RBM47 Gene: 
RBM47 (RNA binding motif protein 47) is a protein-coding gene. Diseases associated with RBM47 include intrahepatic cholangiocarcinoma, and cholangiocarcinoma. GO annotations related to this gene include RNA binding and nucleotide binding. An important paralog of this gene is SYNCRIP.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000004.11  NT_006238.11  NC_018915.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the RBM47 gene promoter:
         STAT5B   HOXA3   GATA-3   IRF-1   NF-kappaB   C/EBPalpha   S8   Ik-2   NF-kappaB2   NF-kappaB1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidRBM47 promoter sequence
   Search SABiosciences Chromatin IP Primers for RBM47

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RBM47


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4p14   Ensembl cytogenetic band:  4p14   HGNC cytogenetic band: 4p14

RBM47 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RBM47 gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04M040425:  view genomic region     (about GC identifiers)

Start:
40,425,272 bp from pter      End:
40,632,892 bp from pter
Size:
207,621 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: RBM47_HUMAN, A0AV96 (See protein sequence)
Recommended Name: RNA-binding protein 47  
Size: 593 amino acids; 64099 Da
Subcellular location: Nucleus (By similarity)
Sequence caution: Sequence=AAM21973.1; Type=Frameshift; Positions=561, 577;
1 PDB 3D structure from and Proteopedia for RBM47:
2DIS (3D)    
Secondary accessions: A0PJK2 B5MED4 Q8NI52 Q8NI53 Q9NXG3
Alternative splicing: 2 isoforms:  A0AV96-1   A0AV96-2   

Explore the universe of human proteins at neXtProt for RBM47: NX_A0AV96

Explore proteomics data for RBM47 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_A0AV96

  • RBM47 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    RBM47 Protein Expression
    REFSEQ proteins (2 alternative transcripts): 
    NP_001092104.1  NP_061900.2  

    ENSEMBL proteins: 
     ENSP00000371212   ENSP00000371214   ENSP00000422945   ENSP00000295971   ENSP00000423243  
     ENSP00000422564   ENSP00000421589   ENSP00000423527   ENSP00000426542   ENSP00000423398  
     ENSP00000424019   ENSP00000425111   ENSP00000425507   ENSP00000320108  

    Human Recombinant Protein Products for RBM47: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    OriGene Purified Protein for RBM47
    OriGene Protein Over-expression Lysate for RBM47
    OriGene MassSpec for RBM47 
    OriGene Custom Protein Services for RBM47
    GenScript Custom Purified and Recombinant Proteins Services for RBM47
    Novus Biologicals RBM47 Lysate
    Browse Sino Biological Recombinant Proteins
    Browse Sino Biological Cell Lysates 
    Browse ProSpec Recombinant Proteins
    Cloud-Clone Corp. Proteins for RBM47 

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IEA--

    RBM47 for ontologies           About GeneDecksing



    RBM47 Antibody Products: 
    Browse EMD Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Browse R&D Systems for Antibodies
    Browse OriGene Antibodies
    OriGene Custom Antibody Services for RBM47
    GenScript Custom Superior Antibodies Services for RBM47
    Novus Biologicals RBM47 Antibodies
    Abcam antibodies for RBM47
    Cloud-Clone Corp. Antibodies for RBM47 
    Search ThermoFisher Antibodies for RBM47
    LSBio Antibodies in human, mouse, rat for RBM47 

    Assay Products for RBM47: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Assay Services for RBM47
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for RBM47
    Browse Enzo Life Sciences for kits & assays
    Cloud-Clone Corp. ELISAs for RBM47 
    Cloud-Clone Corp. CLIAs for RBM47


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    RBM: RNA binding motif (RRM) containing

    3 InterPro protein domains:
     IPR012677 Nucleotide-bd_a/b_plait
     IPR006535 HnRNP_R/Q_splicing_fac
     IPR000504 RRM_dom

    Graphical View of Domain Structure for InterPro Entry A0AV96

    ProtoNet protein and cluster: A0AV96

    UniProtKB/Swiss-Prot: RBM47_HUMAN, A0AV96
    Similarity: Belongs to the RRM RBM47 family
    Similarity: Contains 3 RRM (RNA recognition motif) domains


    RBM47 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

         Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000166nucleotide binding IEA--
    GO:0003676nucleic acid binding ----
    GO:0003723RNA binding IEA--
         
    RBM47 for ontologies           About GeneDecksing


    Phenotypes:
         3 GenomeRNAi human phenotypes for RBM47:
     Increased HPV18 LCR reporter a  Increased cell number in G1, a  Increased gamma-H2AX phosphory 

    Animal Models:
       inGenious Targeting Laboratory - Custom generated mouse model solutions for RBM47 
       inGenious Targeting Laboratory - Custom generated inducible mouse model solutions for RBM47

       genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for RBM47 
       genOway customized Knockin model: humanization, point mutation, expression monitoring, etc. for RBM47 

    miRNA
    Products:
        
    miRTarBase miRNAs that target RBM47:
    hsa-mir-1 (MIRT003847), hsa-mir-124 (MIRT004903)

    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat RBM47
    8/72 QIAGEN miScript miRNA Assays for microRNAs that regulate RBM47 (see all 72):
    hsa-miR-607 hsa-miR-199a-3p hsa-miR-200a hsa-miR-485-3p hsa-miR-3653 hsa-miR-4325 hsa-miR-298 hsa-miR-4273
    SwitchGear 3'UTR luciferase reporter plasmidRBM47 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene RNAi products in human, mouse, rat for RBM47
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RBM47

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for RBM47
    Sirion Biotech Customized adenovirus for overexpression of RBM47

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene clones in human, mouse for RBM47 (see all 11)
    OriGene ORF clones in mouse, rat for RBM47
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
    GenScript: all cDNA clones in your preferred vector (see all 2): RBM47 (NM_019027)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for RBM47
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RBM47
    Sirion Biotech Customized lentivirus for stable overexpression of RBM47 
                         Customized lentivirus expression plasmids for stable overexpression of RBM47 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for RBM47
    Search LifeMap BioReagents cell lines for RBM47
    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RBM47


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RBM47

    STRING Interaction Network Preview (showing 2 interactants - click image to see more details)

    2 Interacting proteins for RBM47 (A0AV963 ENSP000002959714) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ESR2Q927313, ENSP000003439254I2D: score=1 STRING: ENSP00000343925
    ELAVL1ENSP000003852694STRING: ENSP00000385269
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for RBM47

    Search CenterWatch for drugs/clinical trials and news about RBM47

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for RBM47 gene (2 alternative transcripts): 
    NM_001098634.1  NM_019027.3  

    Unigene Cluster for RBM47:

    RNA binding motif protein 47
    Hs.518727  [show with all ESTs]
    Unigene Representative Sequence: NM_001098634
    16 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000381793(uc011bys.1 uc003gvg.1) ENST00000381795(uc003gvd.2)
    ENST00000510871(uc003gve.2) ENST00000295971 ENST00000514014 ENST00000515809
    ENST00000515053 ENST00000513473 ENST00000505414 ENST00000514782 ENST00000507180
    ENST00000511598 ENST00000511902 ENST00000505220 ENST00000513044 ENST00000319592(uc003gvc.2)

    miRNA
    Products:
         
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat RBM47
    8/72 QIAGEN miScript miRNA Assays for microRNAs that regulate RBM47 (see all 72):
    hsa-miR-607 hsa-miR-199a-3p hsa-miR-200a hsa-miR-485-3p hsa-miR-3653 hsa-miR-4325 hsa-miR-298 hsa-miR-4273
    SwitchGear 3'UTR luciferase reporter plasmidRBM47 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene RNAi products in human, mouse, rat for RBM47
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RBM47
    Clone
    Products:
         
    OriGene clones in human, mouse for RBM47 (see all 11)
    OriGene ORF clones in mouse, rat for RBM47
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
    GenScript: all cDNA clones in your preferred vector (see all 2): RBM47 (NM_019027)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for RBM47
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RBM47
    Sirion Biotech Customized lentivirus for stable overexpression of RBM47 
                         Customized lentivirus expression plasmids for stable overexpression of RBM47 
    Primer
    Products:
        
    OriGene qSTAR qPCR primer pairs in human, mouse for RBM47
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat RBM47
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RBM47
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RBM47

    Additional mRNA sequence: 

    AF262323.1 AK000280.1 AK024997.1 AK025296.1 AK057152.1 AK304206.1 BC034402.1 BC071585.1 
    BC126261.1 BC143942.1 BX648404.1 

    24/27 DOTS entries (see all 27):

    DT.95179861  DT.97856620  DT.95218575  DT.91988839  DT.95218565  DT.95218570  DT.100824950  DT.92442257 
    DT.95218580  DT.91869700  DT.100824951  DT.114259  DT.91800752  DT.121243423  DT.95218547  DT.100700570 
    DT.100777775  DT.121243362  DT.92442251  DT.100032000  DT.100699418  DT.102838104  DT.92059811  DT.92442254 

    24/226 AceView cDNA sequences (see all 226):

    AA065035 AI261199 BE536935 AI800233 AW070545 AK024997 BE326599 BF445303 
    AA902893 BG697972 AI367914 AA443632 CB990408 AI796563 AI245339 AA886302 
    BQ924897 AA314230 AA410964 AI284328 BE463513 BG654462 AI073889 AI886042 

    GeneLoc Exon Structure

    5/6 Alternative Splicing Database (ASD) splice patterns (SP) for RBM47 (see all 6)    About this scheme

    ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b · 6c ^ 7 ^ 8a · 8b ^ 9
    SP1:        -     -           -                             -     -         
    SP2:                          -                                             
    SP3:              -           -                                             
    SP4:                          -                                             
    SP5:                                                                        


    ECgene alternative splicing isoforms for RBM47

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    RBM47 expression in normal human tissues (normalized intensities)      RBM47 embryonic expression: see
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TACACTACTG
    RBM47 Expression
    About this image


    RBM47 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database 
     5/14 selected tissues (see all 14) fully expand
     
     Inner Cell Mass (Early Embryonic Tissues)    fully expand to see all 8 entries
             hIPS1
             ESI-017   
     
     Brain (Nervous System)    fully expand to see all 4 entries
             Oligodendrocyte Precursor Cells Forebrain White Matter
             Choroid Plexus
             Midbrain dopaminergic-like neurons ( Generation of midbrain dopaminergic, forebrain...
             brain/hindbrain/4th ventricle   
     
     Kidney (Urinary System)    fully expand to see all 3 entries
             Human Renal Proximal Tubular Epithelial Cells (HRPTEpiC)   
             visceral organ/metanephros/calyx   
     
     Gut Tube (Gastrointestinal Tract)    fully expand to see all 3 entries
             Hindgut
     
     Lower Urinary Tract (Urinary System)    fully expand to see all 3 entries
             visceral organ/bladder   

    See RBM47 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for RBM47

    SOURCE GeneReport for Unigene cluster: Hs.518727
        SABiosciences Custom PCR Arrays for RBM47
    Primer
    Products:
    OriGene qSTAR qPCR primer pairs in human, mouse for RBM47
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat RBM47
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RBM47
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RBM47
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RBM47

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for RBM47 gene from 6/15 species (see all 15)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Rbm471 , 5 RNA binding motif protein 471, 5 87.81(n)1
    95.24(a)1
      5 (33.93 cM)5
    2459451  NM_001127382.11  NP_001120854.11 
     660165495 
    chicken
    (Gallus gallus)
    Aves RBM471 RNA binding motif protein 47 80.62(n)
    92.54(a)
      770355  XM_003641244.1  XP_003641292.1 
    lizard
    (Anolis carolinensis)
    Reptilia RBM476
    Uncharacterized protein
    86(a)
    1 ↔ 1
    5(100050009-100066588)
    zebrafish
    (Danio rerio)
    Actinopterygii si:ch211-241e15.21 si:ch211-241e15.2 73.48(n)
    80.24(a)
      562991  NM_001114686.2  NP_001108158.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG178386
    --
    25(a)
    1 → many
    3R(16582451-16631963)
    worm
    (Caenorhabditis elegans)
    Secernentea hrp-26
    Protein HRP-2, isoform a
    26(a)
    1 → many
    I(12060276-12064899)


    ENSEMBL Gene Tree for RBM47 (if available)
    TreeFam Gene Tree for RBM47 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for RBM47 gene
    SYNCRIP2  DND12  RBM462  A1CF2  HNRNPR2  
    10 SIMAP similar genes for RBM47 using alignment to 11 protein entries:     RBM47_HUMAN (see all proteins):
    RBM46    A1CF    SYNCRIP    CELF3    DND1    CELF4
    HNRPR    DKFZp686A13234    HNRNPR    RBMY1A1

    RBM47 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/4678 SNPs in RBM47 are shown (see all 4678)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 4 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs349722201,2
    C--40424822(+) CATCT-/TTTTTT 2 -- ds50010--------
    rs1506820201,2
    --40424876(+) GCAAAA/GGCATG 2 -- ds50010--------
    rs1134781381,2
    C--40424932(+) CCTACC/TTCAGC 2 -- ds50011Minor allele frequency- T:0.50CSA 2
    rs1441701261,2
    C--40425013(+) ATGAGA/GTTTCA 2 -- ds50010--------
    rs1473560181,2
    --40425039(+) GGTCTC/TGAACT 2 -- ds50010--------
    rs1907806861,2
    --40425059(+) AGGTGA/GTCTGT 2 -- ds50010--------
    rs1823366771,2
    --40425066(+) CTGTCC/TGCCTT 2 -- ds50010--------
    rs100266831,2
    C--40425067(+) tgtccA/Gccttg 2 -- ds50010--------
    rs1498983841,2
    --40425144(+) GGTAGG/TCCCAA 2 -- ds50010--------
    rs1866894771,2
    --40425179(+) CTGATC/TTCTCC 2 -- ds50010--------

    HapMap Linkage Disequilibrium report for RBM47 (40425272 - 40632892 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 7 variations for RBM47:    About this table     
    Variant IDTypeSubtypePubMed ID
    dgv936e199CNV Deletion23128226
    dgv935e199CNV Deletion23128226
    esv2661897CNV Deletion23128226
    nsv829910CNV Loss17160897
    nsv10484CNV Loss18304495
    nsv10482CNV Loss18304495
    dgv1613e1CNV Complex17122850

    SABiosciences Cancer Mutation PCR Assays
    SeqTarget long-range PCR primers for resequencing RBM47
    DNA2.0 Custom Variant and Variant Library Synthesis for RBM47

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    3 diseases for RBM47:    About MalaCards
    intrahepatic cholangiocarcinoma    cholangiocarcinoma    gastric cancer


    RBM47 for disorders           About GeneDecksing

    Genetic Association Database (GAD): RBM47
    Human Genome Epidemiology (HuGE) Navigator: RBM47 (2 documents)

    Export disorders for RBM47 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for RBM47 gene, integrated from 9 sources (see all 12):
    (articles sorted by number of sources associating them with RBM47)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)1, 4 Rose J.E....Uhl G.R. (2010)
    2. A proteome-wide, quantitative survey of in vivo ubiqui tylation sites reveals widespread regulatory roles. (PubMed id 21890473)1 Wagner S.A....Choudhary C. (2011)
    3. Ubiquitin-mediated proteolysis of HuR by heat shock. (PubMed id 19322201)1 Abdelmohsen K....Gorospe M. (2009)
    4. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PubMed id 16712791)1 Wang A.G....Kim N.S. (2006)
    5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (2006)
    6. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)2 Hillier L.W....Wilson R.K. (2005)
    7. Transcriptome analysis of human gastric cancer. (PubMed id 16341674)1 Oh J.H....Kim N.S. (2005)
    8. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PubMed id 15342556)1 Suzuki Y.... Sugano S. (2004)
    9. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
    10. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (2004)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 54502 HGNC: 30358 AceView: FLJ20273 Ensembl:ENSG00000163694 euGenes: HUgn54502
    ECgene: RBM47 H-InvDB: RBM47

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for RBM47 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for RBM47 gene:
    Search GeneIP for patents involving RBM47

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Browse Antibodies   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Protease Activity Assays and Reagents   Browse Recombinant/Natural Proteins  
     Browse Stem Cell Products   Browse Tocris Biochemicals & Compounds  
     Browse cDNA Clones   Browse Proteome Profiler Antibody Arrays  
     Browse OriGene Antibodies   OriGene RNAi products in human, mouse, rat for RBM47  
     Browse OriGene qPCR primer pairs and template standards   OriGene Protein Over-expression Lysate for RBM47  
     OriGene MassSpec something-or-other for RBM47   OriGene clones in human, mouse for RBM47  
     OriGene qSTAR qPCR primer pairs in human, mouse for RBM47   OriGene Purified Protein for RBM47  
     OriGene ORF clones in mouse, rat for RBM47   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for RBM47   OriGene Custom Protein Services for RBM47  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat RBM47
     QIAGEN SeqTarget long-range PCR primers for resequencing RBM47
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RBM47
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RBM47
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RBM47
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RBM47
     GenScript Custom Purified and Recombinant Proteins Services for RBM47 GenScript cDNA clones with any tag delivered in your preferred vector for RBM47
     GenScript Custom Assay Services for RBM47 GenScript Custom Superior Antibodies Services for RBM47
     GenScript Custom overexpressing Cell Line Services for RBM47 CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Search for Antibodies & Assays

     Regulatory tfbs in RBM47 promoter
     Search Chromatin IP Primers for RBM47
     RT2 qPCR Primer Assay in human, mouse, rat RBM47
     Search GNC Networks for RBM47
     SABiosciences Custom PCR Arrays for RBM47
     Search Tocris compounds for RBM47
     Browse Sino Biological Proteins and Antibodies
     Browse Sino Biological Cell Lysates
     Browse Sino Biological cDNA Clones
     4000+ Proteins
     Search Sino Biological for antibodies, proteins & pathways
     Protein Production Services
     Transfection Reagents
     Protein A/G/L resins
     Isotyping reagents
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     RBM47 antibodies
     RBM47 lysates
     Antibodies for RBM47
     See all of Abcam's Antibodies, Kits and Proteins for RBM47
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Browse ProSpec Recombinant Proteins




     Proteins for RBM47
     Antibodies for RBM47
     ELISAs for RBM47
     CLIAs for RBM47
     Search LifeMap BioReagents cell lines for RBM47
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RBM47
     SwitchGear 3'UTR luciferase reporter plasmids for RBM47
     SwitchGear Promoter luciferase reporter plasmids for RBM47
     Search ThermoFisher Antibodies for RBM47
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RBM47
     inGenious Targeting Laboratory - Custom generated mouse model solutions for RBM47
     inGenious Targeting Laboratory - Custom generated inducible mouse model solutions for RBM47
    Customized:
     lentivirus for stable overexpression of RBM47
     lentivirus expression plasmids for stable overexpression of RBM47
     adenovirus for overexpression of RBM47
     LSBio Antibodies in human, mouse, rat for RBM47
    Customized transgenic rodents for:
     Humanization
     Biomarker expression
     Off-target effect monitoring
     Translational medicine
     Tissue-specific gene expresssion
     Time-controlled gene expresssion
           
    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

    View Random Gene

    Category
    (GIFtS: 73)
    transforming growth factor, beta 1
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      RBM47 gene at Home site.
    hostname: 356977-web1.xennexinc.com index build: 106 solr: 1.4