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Aliases for RBM47 Gene

Aliases for RBM47 Gene

  • RNA Binding Motif Protein 47 2 3
  • RNA-Binding Motif Protein 47 3 4
  • RNA-Binding Protein 47 3
  • NET18 3

External Ids for RBM47 Gene

Previous GeneCards Identifiers for RBM47 Gene

  • GC04M040121
  • GC04M039747

Summaries for RBM47 Gene

GeneCards Summary for RBM47 Gene

RBM47 (RNA Binding Motif Protein 47) is a Protein Coding gene. GO annotations related to this gene include RNA binding and nucleotide binding. An important paralog of this gene is HNRNPR.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RBM47 Gene

Genomics for RBM47 Gene

Regulatory Elements for RBM47 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for RBM47 Gene

Start:
40,423,255 bp from pter
End:
40,630,875 bp from pter
Size:
207,621 bases
Orientation:
Minus strand

Genomic View for RBM47 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RBM47 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RBM47 Gene

Proteins for RBM47 Gene

  • Protein details for RBM47 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A0AV96-RBM47_HUMAN
    Recommended name:
    RNA-binding protein 47
    Protein Accession:
    A0AV96
    Secondary Accessions:
    • A0PJK2
    • B5MED4
    • Q8NI52
    • Q8NI53
    • Q9NXG3

    Protein attributes for RBM47 Gene

    Size:
    593 amino acids
    Molecular mass:
    64099 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAM21973.1; Type=Frameshift; Positions=561, 577; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for RBM47 Gene

    Alternative splice isoforms for RBM47 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RBM47 Gene

Proteomics data for RBM47 Gene at MOPED

Post-translational modifications for RBM47 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for RBM47 Gene

Domains for RBM47 Gene

Gene Families for RBM47 Gene

HGNC:
  • RBM :RNA binding motif (RRM) containing

Protein Domains for RBM47 Gene

Graphical View of Domain Structure for InterPro Entry

A0AV96

UniProtKB/Swiss-Prot:

RBM47_HUMAN :
  • A0AV96
Domain:
  • Contains 3 RRM (RNA recognition motif) domains.
Family:
  • Belongs to the RRM RBM47 family.
genes like me logo Genes that share domains with RBM47: view

Function for RBM47 Gene

Gene Ontology (GO) - Molecular Function for RBM47 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000166 nucleotide binding IEA --
GO:0003676 nucleic acid binding --
GO:0044822 poly(A) RNA binding IDA 22658674
genes like me logo Genes that share ontologies with RBM47: view

Phenotypes for RBM47 Gene

genes like me logo Genes that share phenotypes with RBM47: view

Animal Model Products

CRISPR Products

miRNA for RBM47 Gene

miRTarBase miRNAs that target RBM47

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RBM47

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for RBM47 Gene

Localization for RBM47 Gene

Subcellular locations from UniProtKB/Swiss-Prot for RBM47 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RBM47 Gene COMPARTMENTS Subcellular localization image for RBM47 gene
Compartment Confidence
nucleus 3
cytosol 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for RBM47 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with RBM47: view

Pathways for RBM47 Gene

SuperPathways for RBM47 Gene

No Data Available

Interacting Proteins for RBM47 Gene

Gene Ontology (GO) - Biological Process for RBM47 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002244 hematopoietic progenitor cell differentiation IEA --
genes like me logo Genes that share ontologies with RBM47: view

No data available for Pathways by source for RBM47 Gene

Transcripts for RBM47 Gene

Unigene Clusters for RBM47 Gene

RNA binding motif protein 47:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RBM47

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for RBM47

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RBM47 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b · 6c ^ 7 ^ 8a · 8b ^ 9
SP1: - - - - -
SP2: -
SP3: - -
SP4: -
SP5:
SP6: -

Relevant External Links for RBM47 Gene

GeneLoc Exon Structure for
RBM47
ECgene alternative splicing isoforms for
RBM47

Expression for RBM47 Gene

mRNA expression in normal human tissues for RBM47 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for RBM47 Gene

This gene is overexpressed in Colon - Transverse (4.9), Adrenal Gland (4.5), and Whole Blood (4.0).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for RBM47 Gene

SOURCE GeneReport for Unigene cluster for RBM47 Gene Hs.518727

genes like me logo Genes that share expressions with RBM47: view

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for RBM47 Gene

Orthologs for RBM47 Gene

This gene was present in the common ancestor of animals.

Orthologs for RBM47 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RBM47 35
  • 99.44 (n)
  • 99.83 (a)
RBM47 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia DKFZP686F02235 36
  • 98 (a)
OneToOne
RBM47 35
  • 92.02 (n)
  • 96.6 (a)
dog
(Canis familiaris)
Mammalia RBM47 35
  • 91.65 (n)
  • 94.18 (a)
RBM47 36
  • 94 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rbm47 35
  • 87.41 (n)
  • 94.73 (a)
Rbm47 16
Rbm47 36
  • 95 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 92 (a)
OneToMany
-- 36
  • 82 (a)
OneToMany
-- 36
  • 82 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia RBM47 36
  • 89 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rbm47 35
  • 86.62 (n)
  • 94.73 (a)
chicken
(Gallus gallus)
Aves RBM47 35
  • 80.17 (n)
  • 91.53 (a)
RBM47 36
  • 91 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RBM47 36
  • 87 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rbm47 35
  • 70.63 (n)
  • 87.04 (a)
zebrafish
(Danio rerio)
Actinopterygii rbm47 35
  • 73.08 (n)
  • 80.21 (a)
RBM47 36
  • 78 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG17838 36
  • 28 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea hrp-2 36
  • 29 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 50 (a)
OneToOne
Species with no ortholog for RBM47:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RBM47 Gene

ENSEMBL:
Gene Tree for RBM47 (if available)
TreeFam:
Gene Tree for RBM47 (if available)

Paralogs for RBM47 Gene

Paralogs for RBM47 Gene

genes like me logo Genes that share paralogs with RBM47: view

Variants for RBM47 Gene

Sequence variations from dbSNP and Humsavar for RBM47 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs11660 -- 40,424,012(+) TGTTA(C/G)CGGTG utr-variant-3-prime
rs166777 -- 40,430,571(-) TCAGT(A/G)TGTCA intron-variant
rs175914 -- 40,462,188(-) GAATA(C/T)TGAAA intron-variant
rs183945 -- 40,504,508(+) ggctg(A/G)tctcg intron-variant
rs278936 -- 40,507,760(+) CAGCC(C/T)GGGCG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RBM47 Gene

Variant ID Type Subtype PubMed ID
nsv829910 CNV Loss 17160897
esv2661897 CNV Deletion 23128226
dgv1613e1 CNV Complex 17122850
nsv10482 CNV Loss 18304495
dgv935e199 CNV Deletion 23128226
nsv10484 CNV Loss 18304495
dgv936e199 CNV Deletion 23128226

Relevant External Links for RBM47 Gene

HapMap Linkage Disequilibrium report
RBM47

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RBM47 Gene

Disorders for RBM47 Gene

Relevant External Links for RBM47

Genetic Association Database (GAD)
RBM47
Human Genome Epidemiology (HuGE) Navigator
RBM47
genes like me logo Genes that share disorders with RBM47: view

No data available for UniProtKB/Swiss-Prot for RBM47 Gene

Publications for RBM47 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 48
  2. A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. (PMID: 21890473) Wagner S.A. … Choudhary C. (Mol. Cell Proteomics 2011) 3
  3. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3
  4. The central role of EED in the orchestration of polycomb group complexes. (PMID: 24457600) Cao Q. … Chinnaiyan A.M. (Nat Commun 2014) 3
  5. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3

Products for RBM47 Gene

Sources for RBM47 Gene

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