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Aliases for RBM43 Gene

Aliases for RBM43 Gene

  • RNA Binding Motif Protein 43 2 3
  • RNA-Binding Motif Protein 43 3 4
  • C2orf38 3 4
  • Chromosome 2 Open Reading Frame 38 2
  • RNA-Binding Protein 43 3

External Ids for RBM43 Gene

Previous HGNC Symbols for RBM43 Gene

  • C2orf38

Previous GeneCards Identifiers for RBM43 Gene

  • GC02M151815
  • GC02M152104
  • GC02M144001

Summaries for RBM43 Gene

GeneCards Summary for RBM43 Gene

RBM43 (RNA Binding Motif Protein 43) is a Protein Coding gene. GO annotations related to this gene include RNA binding and nucleotide binding.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RBM43 Gene

Genomics for RBM43 Gene

Regulatory Elements for RBM43 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for RBM43 Gene

Start:
151,247,940 bp from pter
End:
151,261,879 bp from pter
Size:
13,940 bases
Orientation:
Minus strand

Genomic View for RBM43 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RBM43 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RBM43 Gene

Proteins for RBM43 Gene

  • Protein details for RBM43 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZSC3-RBM43_HUMAN
    Recommended name:
    RNA-binding protein 43
    Protein Accession:
    Q6ZSC3
    Secondary Accessions:
    • B2RMT5

    Protein attributes for RBM43 Gene

    Size:
    357 amino acids
    Molecular mass:
    40666 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RBM43 Gene

Proteomics data for RBM43 Gene at MOPED

Post-translational modifications for RBM43 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RBM43 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RBM43 Gene

Domains for RBM43 Gene

Gene Families for RBM43 Gene

HGNC:
  • RBM :RNA binding motif (RRM) containing

Protein Domains for RBM43 Gene

Suggested Antigen Peptide Sequences for RBM43 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6ZSC3

UniProtKB/Swiss-Prot:

RBM43_HUMAN :
  • Q6ZSC3
Domain:
  • Contains 1 RRM (RNA recognition motif) domain.
genes like me logo Genes that share domains with RBM43: view

Function for RBM43 Gene

Gene Ontology (GO) - Molecular Function for RBM43 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000166 nucleotide binding IEA --
GO:0003676 nucleic acid binding --
GO:0003723 RNA binding IEA --
genes like me logo Genes that share ontologies with RBM43: view

Phenotypes for RBM43 Gene

GenomeRNAi human phenotypes for RBM43:
genes like me logo Genes that share phenotypes with RBM43: view

Animal Model Products

CRISPR Products

miRNA for RBM43 Gene

miRTarBase miRNAs that target RBM43

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RBM43

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for RBM43 Gene

Localization for RBM43 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RBM43 Gene COMPARTMENTS Subcellular localization image for RBM43 gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for RBM43 Gene

Pathways for RBM43 Gene

SuperPathways for RBM43 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RBM43 Gene

None

No data available for Pathways by source for RBM43 Gene

Transcripts for RBM43 Gene

mRNA/cDNA for RBM43 Gene

(3) Additional mRNA sequences :
(15) Selected AceView cDNA sequences:
(2) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RBM43 Gene

RNA binding motif protein 43:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RBM43

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for RBM43

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RBM43 Gene

No ASD Table

Relevant External Links for RBM43 Gene

GeneLoc Exon Structure for
RBM43
ECgene alternative splicing isoforms for
RBM43

Expression for RBM43 Gene

mRNA expression in normal human tissues for RBM43 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for RBM43 Gene

SOURCE GeneReport for Unigene cluster for RBM43 Gene Hs.302442

genes like me logo Genes that share expressions with RBM43: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for RBM43 Gene

Orthologs for RBM43 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RBM43 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RBM43 35
  • 99.34 (n)
  • 99.15 (a)
RBM43 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RBM43 35
  • 80.02 (n)
  • 66.37 (a)
RBM43 36
  • 66 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RBM43 36
  • 61 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rbm43 35
  • 72.11 (n)
  • 58.02 (a)
Rbm43 16
Rbm43 36
  • 58 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia RBM43 36
  • 44 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rbm43 35
  • 71.82 (n)
  • 59.48 (a)
chicken
(Gallus gallus)
Aves RBM43 35
  • 55.39 (n)
  • 39.47 (a)
RBM43 36
  • 36 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RBM43 36
  • 29 (a)
OneToOne
Species with no ortholog for RBM43:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RBM43 Gene

ENSEMBL:
Gene Tree for RBM43 (if available)
TreeFam:
Gene Tree for RBM43 (if available)

Paralogs for RBM43 Gene

Pseudogenes.org Pseudogenes for RBM43 Gene

genes like me logo Genes that share paralogs with RBM43: view

No data available for Paralogs for RBM43 Gene

Variants for RBM43 Gene

Sequence variations from dbSNP and Humsavar for RBM43 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs172341 -- 151,263,799(-) TATAT(A/G)AATCT upstream-variant-2KB
rs289840 -- 151,263,591(-) ACCAC(G/T)CCCGG upstream-variant-2KB
rs289882 -- 151,249,245(+) aatgt(A/G)gacac utr-variant-3-prime
rs289883 -- 151,250,139(+) TTTTT(A/G)CCAGT utr-variant-3-prime
rs289884 -- 151,250,700(+) CATTC(C/T)TTGTC utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for RBM43 Gene

Variant ID Type Subtype PubMed ID
esv34659 CNV Loss 17911159
nsv523849 CNV Gain 19592680
nsv834417 CNV Gain 17160897

Relevant External Links for RBM43 Gene

HapMap Linkage Disequilibrium report
RBM43
Human Gene Mutation Database (HGMD)
RBM43

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RBM43 Gene

Disorders for RBM43 Gene

Relevant External Links for RBM43

Genetic Association Database (GAD)
RBM43
genes like me logo Genes that share disorders with RBM43: view

No data available for UniProtKB/Swiss-Prot for RBM43 Gene

Publications for RBM43 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  3. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PMID: 21139048) Danielsen J.M. … Nielsen M.L. (Mol. Cell Proteomics 2011) 3
  4. A genome-wide association search for type 2 diabetes genes in African Americans. (PMID: 22238593) Palmer N.D. … Sladek R. (PLoS ONE 2012) 3
  5. Genome-wide association study link novel loci to endometriosis. (PMID: 23472165) Albertsen H.M. … Ward K. (PLoS ONE 2013) 3

Products for RBM43 Gene

Sources for RBM43 Gene

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