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Aliases for RBM41 Gene

Aliases for RBM41 Gene

  • RNA Binding Motif Protein 41 2 3
  • RNA-Binding Motif Protein 41 4

External Ids for RBM41 Gene

Summaries for RBM41 Gene

GeneCards Summary for RBM41 Gene

RBM41 (RNA Binding Motif Protein 41) is a Protein Coding gene. Diseases associated with RBM41 include ebstein anomaly. GO annotations related to this gene include RNA binding and nucleotide binding. An important paralog of this gene is RNPC3.

UniProtKB/Swiss-Prot for RBM41 Gene

  • May bind RNA.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RBM41 Gene

Genomics for RBM41 Gene

Genomic Location for RBM41 Gene

Start:
107,061,885 bp from pter
End:
107,118,827 bp from pter
Size:
56,943 bases
Orientation:
Minus strand

Genomic View for RBM41 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RBM41 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RBM41 Gene

Regulatory Elements for RBM41 Gene

Proteins for RBM41 Gene

  • Protein details for RBM41 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96IZ5-RBM41_HUMAN
    Recommended name:
    RNA-binding protein 41
    Protein Accession:
    Q96IZ5
    Secondary Accessions:
    • Q5JSN7
    • Q5JSN8
    • Q9H8F7
    • Q9NV04

    Protein attributes for RBM41 Gene

    Size:
    413 amino acids
    Molecular mass:
    47100 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for RBM41 Gene

    Alternative splice isoforms for RBM41 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RBM41 Gene

Proteomics data for RBM41 Gene at MOPED

Post-translational modifications for RBM41 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RBM41 Gene

No data available for DME Specific Peptides for RBM41 Gene

Domains for RBM41 Gene

Gene Families for RBM41 Gene

HGNC:
  • RBM :RNA binding motif (RRM) containing

Protein Domains for RBM41 Gene

UniProtKB/Swiss-Prot:

RBM41_HUMAN
Domain:
  • Contains 1 RRM (RNA recognition motif) domain.:
    • Q96IZ5
genes like me logo Genes that share domains with RBM41: view

Function for RBM41 Gene

Molecular function for RBM41 Gene

UniProtKB/Swiss-Prot Function: May bind RNA.

Gene Ontology (GO) - Molecular Function for RBM41 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000166 nucleotide binding IEA --
GO:0003676 nucleic acid binding --
GO:0003723 RNA binding IEA --
GO:0005515 protein binding IPI 16189514
genes like me logo Genes that share ontologies with RBM41: view

Phenotypes for RBM41 Gene

MGI mutant phenotypes for RBM41:
inferred from 1 alleles
genes like me logo Genes that share phenotypes with RBM41: view

miRNA for RBM41 Gene

miRTarBase miRNAs that target RBM41

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for RBM41 Gene

Localization for RBM41 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RBM41 Gene COMPARTMENTS Subcellular localization image for RBM41 gene
Compartment Confidence
nucleus 3
cytosol 1

No data available for Gene Ontology (GO) - Cellular Components for RBM41 Gene

Pathways for RBM41 Gene

SuperPathways for RBM41 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RBM41 Gene

None

No data available for Pathways by source for RBM41 Gene

Transcripts for RBM41 Gene

Unigene Clusters for RBM41 Gene

RNA binding motif protein 41:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RBM41 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8a · 8b ^ 9
SP1: - -
SP2: -
SP3:

Relevant External Links for RBM41 Gene

GeneLoc Exon Structure for
RBM41
ECgene alternative splicing isoforms for
RBM41

Expression for RBM41 Gene

mRNA expression in normal human tissues for RBM41 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for RBM41 Gene

SOURCE GeneReport for Unigene cluster for RBM41 Gene Hs.139053

genes like me logo Genes that share expressions with RBM41: view

Orthologs for RBM41 Gene

This gene was present in the common ancestor of animals.

Orthologs for RBM41 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RBM41 36
  • 99.84 (n)
  • 100 (a)
RBM41 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RBM41 36
  • 94.35 (n)
  • 95.4 (a)
RBM41 37
  • 95 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RBM41 36
  • 95.3 (n)
  • 95.86 (a)
RBM41 37
  • 95 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rbm41 36
  • 89.02 (n)
  • 87.41 (a)
Rbm41 16
Rbm41 37
  • 84 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia RBM41 37
  • 67 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rbm41 36
  • 90.07 (n)
  • 88.38 (a)
chicken
(Gallus gallus)
Aves RBM41 36
  • 62.85 (n)
  • 56.49 (a)
RBM41 37
  • 55 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RBM41 37
  • 39 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii rbm41 36
  • 53.55 (n)
  • 43.65 (a)
rbm41 37
  • 38 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta Snp 37
  • 16 (a)
OneToMany
Species with no ortholog for RBM41:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RBM41 Gene

ENSEMBL:
Gene Tree for RBM41 (if available)
TreeFam:
Gene Tree for RBM41 (if available)

Paralogs for RBM41 Gene

Paralogs for RBM41 Gene

genes like me logo Genes that share paralogs with RBM41: view

Variants for RBM41 Gene

Sequence variations from dbSNP and Humsavar for RBM41 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs923042 -- 107,088,250(-) TATAA(C/G)GTTCT intron-variant
rs961375 -- 107,119,200(-) AGACT(C/G)GTGTC upstream-variant-2KB
rs980098 -- 107,068,694(+) AGGTA(C/T)AGATC intron-variant
rs980099 -- 107,068,757(+) AAATT(C/T)GCATA intron-variant
rs1116289 -- 107,102,703(-) ggcct(A/C)tatgt intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RBM41 Gene

Variant ID Type Subtype PubMed ID
esv2752312 CNV Gain 17911159
nsv519484 CNV Gain 19592680
esv2740376 CNV Deletion 23290073
nsv7026 CNV Loss 18451855
esv2675921 CNV Deletion 23128226

Relevant External Links for RBM41 Gene

HapMap Linkage Disequilibrium report
RBM41
Locus Specific Mutation Databases (LSDB)
RBM41

Disorders for RBM41 Gene

(1) MalaCards Diseases for RBM41 Gene

Search for RBM41 Gene in MalaCards »

(1) University of Copenhagen DISEASES for RBM41 Gene

genes like me logo Genes that share disorders with RBM41: view

No data available for UniProtKB/Swiss-Prot for RBM41 Gene

Publications for RBM41 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3 4
  5. Towards a proteome-scale map of the human protein-protein interaction network. (PMID: 16189514) Rual J.F. … Vidal M. (Nature 2005) 3

Products for RBM41 Gene

Sources for RBM41 Gene

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