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RBM34 Gene

protein-coding   GIFtS: 50
GCID: GC01M235294

RNA Binding Motif Protein 34

  Search for RBM34
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
RNA Binding Motif Protein 341 2
RNA-Binding Motif Protein 342 3
RNA-Binding Protein 342
KIAA01173

External Ids:    HGNC: 289651   Entrez Gene: 230292   Ensembl: ENSG000001887397   UniProtKB: P426963   

Export aliases for RBM34 gene to outside databases

Previous GC identifers: GC01M231489 GC01M233361 GC01M205743


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for RBM34 Gene:
RBM34 (RNA binding motif protein 34) is a protein-coding gene. GO annotations related to this gene include RNA binding and nucleotide binding.

Gene Wiki entry for RBM34 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000001.10  NC_018912.2  NT_167186.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the RBM34 gene promoter:
         HOXA9   HOXA9B   POU2F1   FOXJ2 (long isoform)   POU2F1a   FOXO1a   STAT3   Meis-1a   FOXO1   Meis-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidRBM34 promoter sequence
   Search Chromatin IP Primers for RBM34

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat RBM34


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1q42.3   Ensembl cytogenetic band:  1q42.3   HGNC cytogenetic band: 1q42.3

RBM34 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RBM34 gene location

GeneLoc information about chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01M235294:  view genomic region     (about GC identifiers)

Start:
235,294,498 bp from pter      End:
235,324,772 bp from pter
Size:
30,275 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: RBM34_HUMAN, P42696 (See protein sequence)
Recommended Name: RNA-binding protein 34  
Size: 430 amino acids; 48565 Da
Sequence caution: Sequence=AAH29451.1; Type=Erroneous initiation; Sequence=BAA07503.1; Type=Erroneous initiation;
Sequence=BAF85051.1; Type=Erroneous initiation;
Secondary accessions: A8K8J7 Q8N2Z8 Q9H5A1
Alternative splicing: 2 isoforms:  P42696-1   P42696-2   (May be due to an intron retention)

Explore the universe of human proteins at neXtProt for RBM34: NX_P42696

Explore proteomics data for RBM34 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See RBM34 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins (2 alternative transcripts): 
    NP_001155005.1  NP_055829.2  

    ENSEMBL proteins: 
     ENSP00000386226   ENSP00000400000   ENSP00000420236   ENSP00000413409   ENSP00000355565  

    RBM34 Human Recombinant Protein Products:

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    Cloud-Clone Corp. Proteins for RBM34

     
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    Search eBioscience for ELISAs for RBM34 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    RBM: RNA binding motif (RRM) containing

    2 InterPro protein domains:
     IPR012677 Nucleotide-bd_a/b_plait
     IPR000504 RRM_dom

    Graphical View of Domain Structure for InterPro Entry P42696

    ProtoNet protein and cluster: P42696

    1 Blocks protein domain: IPB000504 RNA-binding region RNP-1 (RNA recognition motif)

    UniProtKB/Swiss-Prot: RBM34_HUMAN, P42696
    Similarity: Belongs to the RRM RBM34 family
    Similarity: Contains 2 RRM (RNA recognition motif) domains


    Find genes that share domains with RBM34           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 4 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000166nucleotide binding IEA--
    GO:0003676nucleic acid binding ----
    GO:0003723RNA binding ----
    GO:0044822poly(A) RNA binding IDA--
         
    Find genes that share ontologies with RBM34           About GenesLikeMe


    Phenotypes:
         2 GenomeRNAi human phenotypes for RBM34:
     G0/1 arrest  Increased G1 DNA content 

    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for RBM34
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       genOway customized Knockin model: humanization, point mutation, expression monitoring, etc. for RBM34

    miRNA
    Products:
        
    miRTarBase miRNAs that target RBM34:
    hsa-mir-183-5p (MIRT024993), hsa-let-7b-5p (MIRT032382), hsa-mir-30a-5p (MIRT028549)

    Block miRNA regulation of human, mouse, rat RBM34 using miScript Target Protectors
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    Browse Sino Biological Human cDNA Clones
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RBM34


    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    RBM34_HUMAN, P42696: Nucleus, nucleolus
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus5

    Gene Ontology (GO): 2 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IDA--
    GO:0005730nucleolus IDA--

    Find genes that share ontologies with RBM34           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for RBM34
    Interactions:

        Search GeneGlobe Interaction Network for RBM34

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    Selected Interacting proteins for RBM34 (P426963 ENSP000003555654) via UniProtKB, MINT, STRING, and/or I2D (see all 136)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    IKBKGQ9Y6K93, ENSP000003586224I2D: score=1 STRING: ENSP00000358622
    CLN3Q132863I2D: score=1 
    GABARAPL1Q9H0R83I2D: score=1 
    KBTBD7Q8WVZ93I2D: score=1 
    NSMAFQ926363I2D: score=1 
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for RBM34



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for RBM34 gene (2 alternative transcripts): 
    NM_001161533.1  NM_015014.2  

    Unigene Cluster for RBM34:

    RNA binding motif protein 34
    Hs.535224  [show with all ESTs]
    Unigene Representative Sequence: NM_015014
    11 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000408888(uc001hwn.3 uc001hwo.3 uc010pxp.1) ENST00000495224
    ENST00000447801 ENST00000474086 ENST00000476261 ENST00000468751 ENST00000429912
    ENST00000475960 ENST00000486751 ENST00000485019 ENST00000366606
    miRNA
    Products:
         
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    Search for qRT-PCR Assays for microRNAs that regulate RBM34
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    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat RBM34
    Clone
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    GenScript: all cDNA clones in your preferred vector (see all 2): RBM34 (NM_001161533)
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    Primer
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      QuantiTect SYBR Green Assays in human, mouse, rat RBM34
      QuantiFast Probe-based Assays in human, mouse, rat RBM34

    Additional mRNA sequence: 

    AK292362.1 BC029451.1 D38491.1 NR_027762.1 

    18 DOTS entries:

    DT.315604  DT.100823464  DT.92433236  DT.100696358  DT.95198870  DT.75186254  DT.95089620  DT.121438660 
    DT.91666783  DT.95089619  DT.100844666  DT.452426  DT.95089630  DT.92037159  DT.100823448  DT.75127825 
    DT.92433237  DT.95096479 

    Selected AceView cDNA sequences (see all 198):

    AI858562 CR615831 BQ924877 BQ446327 AI343363 AU123670 AA447551 AI342592 
    AI383138 BU632835 BF513421 BU609087 BQ026989 D38491 CB115829 CB116435 
    AA743611 NM_015014 BU076256 AI476616 CB142607 CB150476 T28187 AW327787 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    RBM34 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: CGTTCTGTTA
    RBM34 Expression
    About this image

    RBM34 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    RBM34 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.535224
        Custom PCR Arrays for RBM34
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RBM34

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals and fungi.

    Orthologs for RBM34 gene from Selected species (see all 15)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Rbm341 , 5 RNA binding motif protein 341, 5 77.28(n)1
    71.43(a)1
      8 (74.64 cM)5
    522021  NM_172762.21  NP_766350.21 
     1269471755 
    chicken
    (Gallus gallus)
    Aves RBM341 RNA binding motif protein 34 60.63(n)
    56.27(a)
      426311  XM_423974.4  XP_423974.3 
    lizard
    (Anolis carolinensis)
    Reptilia RBM346
    RNA binding motif protein 34
    49(a)
    1 ↔ 1
    1(219633068-219648526)
    African clawed frog
    (Xenopus laevis)
    Amphibia CD328749.12   -- 70.57(n)    CD328749.1 
    zebrafish
    (Danio rerio)
    Actinopterygii rbm341 RNA binding motif protein 34 56.4(n)
    53.97(a)
      436655  NM_001002382.1  NP_001002382.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG122886
    --
    23(a)
    1 ↔ 1
    2L(16900535-16902189)
    worm
    (Caenorhabditis elegans)
    Secernentea F11A10.76
    Protein F11A10.7 (F11A10.7) mRNA, complete cds
    29(a)
    1 ↔ 1
    IV(12085423-12087026) WBGene00008688
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes NOP12(YOL041C)4 Nucleolar protein involved in pre-25S rRNA processing more   --   15(252646-251267) 854116  NP_014601.1 


    ENSEMBL Gene Tree for RBM34 (if available)
    TreeFam Gene Tree for RBM34 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for RBM34 (see all 657)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 1 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs711722581,2
    C--205756074(+) ACACA-/TAGAGAC 2 -- int11Minor allele frequency- TA:0.00NA 2
    rs1930530091,2
    --235294425(+) GAAGCA/GACATC 2 -- int10--------
    rs1473675991,2
    --235294493(+) ACACAC/TGGAGT 2 -- int10--------
    rs775179311,2
    C,F--235294537(+) GAAAGG/CAGGCT 2 -- ut31 nc-transcript-variant1Minor allele frequency- C:0.05NA 120
    rs1856620251,2
    C--235294636(+) GGCCAA/TCATGG 2 -- ut31 nc-transcript-variant0--------
    rs1905694041,2
    --235294737(+) AGAAGC/TGCTTG 2 -- ut31 nc-transcript-variant0--------
    rs1145150101,2
    C,F--235294804(+) GGAGAC/TAACAG 2 -- ut31 nc-transcript-variant1Minor allele frequency- T:0.02WA 118
    rs1810316061,2
    --235294814(+) GCCAAA/TCTCCA 2 -- ut31 nc-transcript-variant0--------
    rs1837886221,2
    --235295039(+) CTGTTC/TTCTCT 3 K E mis10--------
    rs1881312741,2
    C--235295086(+) TCTTCA/GTTTTA 3 T M mis10--------

    HapMap Linkage Disequilibrium report for RBM34 (235294498 - 235324772 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 4 variations for RBM34:    About this table    
    Variant IDTypeSubtypePubMed ID
    esv2670623CNV Deletion23128226
    esv2725296CNV Deletion23290073
    esv275126CNV Loss21479260
    nsv508699CNV Loss20534489

    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for RBM34 gene, integrated from 10 sources (see all 23):
    (articles sorted by number of sources associating them with RBM34)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Prediction of the coding sequences of unidentified human genes. III. The coding sequences of 40 new genes (KIAA0081-KIAA0120) deduced by analysis of cDNA clones from human cell line KG-1. (PubMed id 7788527)1, 2, 3 Nagase T.... Nomura N. (DNA Res. 1995)
    2. The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)1, 2 Gregory S.G.... Bentley D.R. (Nature 2006)
    3. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)1, 2 Olsen J.V....Mann M. (Cell 2006)
    4. Microarray analysis of differentially expressed genes in cells resistant to HIV-1. (PubMed id 15134903)1, 3 Kartvelishvili A....Simm M. (Immunol. Lett. 2004)
    5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    6. Functional proteomic analysis of human nucleolus. (PubMed id 12429849)1, 2 Scherl A.... Diaz J.-J. (Mol. Biol. Cell 2002)
    7. The protein interaction landscape of the human CMGC kinase group. (PubMed id 23602568)1 Varjosalo M....Gstaiger M. (Cell Rep 2013)
    8. The functional interactome landscape of the human histone deacetylase family. (PubMed id 23752268)1 Joshi P....Cristea I.M. (Mol. Syst. Biol. 2013)
    9. Functional proteomics establishes the interaction of SIRT7 with chromatin remodeling complexes and expands its role in regulation of RNA polymerase I transcription. (PubMed id 22586326)1 Tsai Y.C.... Cristea I.M. (Mol. Cell. Proteomics 2012)
    10. N-terminal acetylome analyses and functional insights of the N- terminal acetyltransferase NatB. (PubMed id 22814378)2 Van Damme P....Aldabe R. (Proc. Natl. Acad. Sci. U.S.A. 2012)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 23029 HGNC: 28965 AceView: KIAA0117 Ensembl:ENSG00000188739 euGenes: HUgn23029
    ECgene: RBM34 H-InvDB: RBM34

    (According to HUGE)
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    HUGE: KIAA0117

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for RBM34 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for RBM34 gene:
    Search GeneIP for patents involving RBM34

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

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