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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

RBM33 Gene

protein-coding GIFtS: 44
GCID: GC07P155437

RNA binding motif protein 33

(Previous name: proline rich 8 )
(Previous symbol: PRR8)

Explore 1 disease affiliated with
RBM33 via

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
RNA Binding Motif Protein 33¹ ²		DKFZp434D1319¹
PRR8¹ ² ³		DKFZp686F102¹
Proline Rich 8¹ ²		MGC20460¹
Proline-Rich Protein 8² ³		Hypothetical Protein MGC20460²
RNA-Binding Motif Protein 33² ³		RNA-Binding Protein 33²

External Ids:	HGNC: 27223¹	Entrez Gene: 155435²	Ensembl: ENSG00000184863⁷	UniProtKB: Q96EV2³

Export aliases for RBM33 gene to outside databases

Previous GC identifers: GC07P155039 GC07P155232 GC07P155133 GC07P149167

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Gene Wiki entry for RBM33

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000007.13 NC_018918.1 NT_007741.14 NT_079596.2

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the RBM33 gene promoter:
FOXF2 HNF-3beta Roaz
Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 8): RBM33 promoter sequence

Search SABiosciences Chromatin IP Primers for RBM33

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RBM33

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 7q36.3 Ensembl cytogenetic band: 7q36.3 HGNC cytogenetic band: 7q36.3

RBM33 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RBM33 gene location

GeneLoc information about chromosome 7 GeneLoc Exon Structure

GeneLoc location for GC07P155437: view genomic region (about GC identifiers)

Start:	155,437,145 bp from pter	End:	155,574,179 bp from pter
Size:	137,035 bases	Orientation:	plus strand

1 alternative location:

Chr7+,CRA_TCAG 154,668,779-154,805,751

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: RBM33_HUMAN, Q96EV2 (See protein sequence)

Recommended Name: RNA-binding protein 33

Size: 1170 amino acids; 129986 Da

Sequence caution: Sequence=AAH93947.1; Type=Erroneous initiation; Sequence=AAH93949.1; Type=Erroneous initiation;

Sequence=AAS01989.1; Type=Erroneous gene model prediction; Sequence=AAS02026.1; Type=Erroneous gene model prediction;

Sequence=AAS07551.1; Type=Erroneous gene model prediction; Sequence=CAB70894.1; Type=Miscellaneous discrepancy;

Note=Intron retention; Sequence=EAL23911.1; Type=Erroneous gene model prediction; Sequence=EAL23912.1; Type=Erroneous

gene model prediction; Sequence=EAX04539.1; Type=Erroneous gene model prediction;

Secondary accessions: A4D244 B5MC24 Q52LF5 Q75LN9 Q75ML5 Q9NSV0

Alternative splicing: 2 isoforms: Q96EV2-1 Q96EV2-2

Explore the universe of human proteins at neXtProt for RBM33: NX_Q96EV2

Post-translational modifications:

View modification sites using PhosphoSitePlus²

View neXtProt modification sites for NX_Q96EV2

RBM33 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins: NP_444271.2

ENSEMBL proteins:

ENSP00000287912 ENSP00000384160 ENSP00000376513 ENSP00000303878 ENSP00000394987

ENSP00000376514 ENSP00000405793 ENSP00000341583 ENSP00000376510

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(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

RBM33 for domains About GeneDecksing

2 InterPro domains/families:

IPR012677 Nucleotide-bd_a/b_plait

IPR000504 RRM_dom

Graphical View of Domain Structure for InterPro Entry Q96EV2

ProtoNet protein and cluster: Q96EV2

UniProtKB/Swiss-Prot: RBM33_HUMAN, Q96EV2

Similarity: Contains 1 RRM (RNA recognition motif) domain

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

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In Situ Assay
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Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0000166	nucleotide binding	IEA	--
GO:0003723	RNA binding	IEA	--

RBM33 for ontologies About GeneDecksing

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for RBM33

STRING Interaction Network Preview (showing 5 interactants - click image to see 7)

5/7 Interacting proteins for RBM33 (Q96EV2³ ENSP00000384160⁴) via UniProtKB, MINT, STRING, and/or I2D (see all 7)

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
TERF1	P54274³, ENSP00000276603⁴	I2D: score=1 STRING: ENSP00000276603
SUMO3	P55854³, ENSP00000330343⁴	I2D: score=1 STRING: ENSP00000330343
SUMO1	P63165³, ENSP00000376076⁴	I2D: score=1 STRING: ENSP00000376076
GRB2	P62993³, ENSP00000339007⁴	I2D: score=2 STRING: ENSP00000339007
TERF2	Q15554³, ENSP00000254942⁴	I2D: score=1 STRING: ENSP00000254942

About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for RBM33
Search CenterWatch for drugs/clinical trials and news about RBM33

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
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Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for RBM33 gene (2 alternative transcripts):

NM_001008408.3 NM_053043.2

Unigene Cluster for RBM33:

RNA binding motif protein 33

Hs.591815 [show with all ESTs]

Unigene Representative Sequence: NM_053043

10 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000287912(uc003wme.3) ENST00000401878(uc010lqk.1) ENST00000392759

ENST00000307403 ENST00000440108 ENST00000392761(uc011kvv.1) ENST00000486747

ENST00000438356 ENST00000341148(uc003wmg.2) ENST00000392755

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		hsa-miR-4254 hsa-miR-520e hsa-miR-200a hsa-miR-938 hsa-miR-3653 hsa-miR-519a hsa-miR-3161 hsa-miR-3613-3p

		Browse SwitchGear 3'UTR luciferase reporter plasmids

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Additional cDNA sequence:

AK055460.1 AK055645.1 AK056415.1 AK301179.1 AK307515.1 AL832196.1 BC093947.1 BC093949.1

18 DOTS entries:

DT.453013 DT.91745895 DT.100746223 DT.310831 DT.92056789 DT.99930066 DT.91745892 DT.100788793

DT.91895808 DT.95163693 DT.99962182 DT.40131113 DT.75141736 DT.92418745 DT.95271207 DT.95318047

DT.40312966 DT.86849739

24/290 AceView cDNA sequences (see all 290):

AI889169 N62999 N42021 AL535331 AI675257 AA723858 CK826140 BQ022604

BU431047 BF434192 AI889564 BE551440 AA814258 AA100621 BM979923 AI802867

BQ185073 CD515534 AA417935 BU178889 BM763933 BQ434052 BE327558 CA428289

GeneLoc Exon Structure

2 Alternative Splicing Database (ASD) splice patterns (SP) for RBM33 About this scheme

ExUns:	1a	·	1b	^	2	^	3	^	4	^	5	^	6	^	7a	·	7b
SP1:
SP2:													-

ECgene alternative splicing isoforms for RBM33

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

RBM33 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --

About this image
See RBM33 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for RBM33

SOURCE GeneReport for Unigene cluster: Hs.591815

SABiosciences Custom PCR Arrays for RBM33

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In Situ
Assay Products:

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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of animals.

Orthologs for RBM33 gene from 5/14 species (see all 14) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
mouse (Mus musculus)	Mammalia	Rbm33^{1 , 5}	RNA binding motif protein 33^{1, 5}	84.75(n)¹ 88.54(a)¹		5 (14.36 cM)⁵ 381626¹ NM_028234.1¹ NP_082510.1¹ 28317121⁵
chicken (Gallus gallus)	Aves	RBM33¹	RNA binding motif protein 33	75.59(n) 75.44(a)		420444 XM_003640653.1 XP_003640701.1
lizard (Anolis carolinensis)	Reptilia	RBM33⁶	--	66(a)	1 ↔ 1	6(5835035-5912087)
zebrafish (Danio rerio)	Actinopterygii	si:ch211-150e22.5¹	si:ch211-150e22.5	53.04(n) 46.93(a)		100149667 XM_001919509.2 XP_001919544.1
fruit fly (Drosophila melanogaster)	Insecta	CG2186⁶	--	16(a)	1 ↔ 1	X(10751688-10760279)

ENSEMBL Gene Tree for RBM33 (if available)
TreeFam Gene Tree for RBM33 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 7 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs11768952^1,2	C,H	--	154666917(+)	`ccaccA/Gcgcct`	1	--	nc-transcript-variant		0	--	--	--	--
rs1559549^1,2	C,H,	--	154667300(-)	`TATCAC/TCTTTC`	1	--	int¹		4		MN NS NA	474
rs7796579^1,2	C,	--	154668748(+)	`CAGTCG/ATCCCC`	1	--	us2k¹ ese³		3		WA CSA	121
rs76847091^1,2	C,F,	--	154669072(+)	`CGTACC/ACGGGC`	1	--	us2k¹		1		WA	118
rs77732399^1,2	F,	--	154669321(+)	`CTATTC/TCGTTT`	1	--	us2k¹		1		WA	118
rs117750065^1,2	C,F,	--	154669517(+)	`GAGCGC/TCCCCC`	1	--	us2k¹		1		NA	120
rs56404861^1,2	C	--	154669547(+)	`CACTTA/GGGGAG`	1	--	us2k¹		0	--	--	--	--
rs79236276^1,2	F,	--	154669883(+)	`AACACC/ATATCT`	1	--	us2k¹		1		WA	118
rs79517834^1,2		--	154670273(+)	`ATGATG/ATTTGC`	1	--	us2k¹		1		NA	120
rs4716888^1,2	C,F,A,H,	--	155435208(+)	`ACCACG/ACCCAG`	2	--	us2k¹ nc-transcript-variant		6		NA WA CSA	11

HapMap Linkage Disequilibrium report for RBM33 (155437145 - 155574179 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 1 variation for RBM33
1 CNV: 6584

SABiosciences Cancer Mutation PCR Assays

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

RBM33 for disorders About GeneDecksing

1 disease for RBM33: About MalaCards

filariasis

1 disease from the University of Copenhagen DISEASES database for RBM33:

Filariasis

Export disorders for RBM33 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for RBM33 gene, integrated from 9 sources (see all 25):
(articles sorted by number of sources associating them with RBM33)

Utopia: connect your pdf to the dynamic
world of online information

Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)^{1, 2} Olsen J.V....Mann M. (2006)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{1, 2} Gerhard D.S....Malek J. (2004)
Human chromosome 7: DNA sequence and biology. (PubMed id 12690205)^{1, 2} Scherer S.W.... Tsui L.-C. (2003)
The DNA sequence of human chromosome 7. (PubMed id 12853948)^{1, 2} Hillier L.W.... Wilson R.K. (2003)
A census of human soluble protein complexes. (PubMed id 22939629)¹ Havugimana P.C....Emili A. (2012)
Initial characterization of the human central proteome. (PubMed id 21269460)² Burkard T.R.... Colinge J. (2011)
System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation. (PubMed id 21406692)² Rigbolt K.T....Blagoev B. (2011)
Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048)¹ Danielsen J.M....Nielsen M.L. (2011)
Comparative proteomic analysis identifies a role for S UMO in protein quality control. (PubMed id 21693764)¹ Tatham M.H....Hay R.T. (2011)
Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. (PubMed id 20068231)² Olsen J.V....Mann M. (2010)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 155435	HGNC: 27223	AceView: MGC20460	Ensembl:ENSG00000184863	euGenes: HUgn155435
ECgene: RBM33	H-InvDB: RBM33

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for RBM33	Pharmacogenomics, SNPs, Pathways

Intellectual Property for RBM33 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for RBM33 gene:
Search GeneIP for patents involving RBM33

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section


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GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

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Category			VWF (GIFTS: 73) von Willebrand factor
GIFtS Group

The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

The GeneCards Human Gene Database

Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

Hot genes Disease genes RBM33 gene at Home site.

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RBM33 Gene

RNA binding motif protein 33

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RBM33 Gene

RNA binding motif protein 33

Aliasesfor RBM33 gene

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Protein Domains /Familiesfor RBM33 gene

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