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Aliases for RBM33 Gene

Aliases for RBM33 Gene

  • RNA Binding Motif Protein 33 2 3
  • RNA-Binding Motif Protein 33 3 4
  • Proline-Rich Protein 8 3 4
  • Proline Rich 8 2 3
  • PRR8 3 4
  • Hypothetical Protein MGC20460 3
  • RNA-Binding Protein 33 3

External Ids for RBM33 Gene

Previous Symbols for RBM33 Gene

  • PRR8

Summaries for RBM33 Gene

GeneCards Summary for RBM33 Gene

RBM33 (RNA Binding Motif Protein 33) is a Protein Coding gene. GO annotations related to this gene include RNA binding and nucleotide binding.

Gene Wiki entry for RBM33 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RBM33 Gene

Genomics for RBM33 Gene

Genomic Location for RBM33 Gene

Start:
155,644,451 bp from pter
End:
155,781,485 bp from pter
Size:
137,035 bases
Orientation:
Plus strand

Genomic View for RBM33 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RBM33 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RBM33 Gene

Regulatory Elements for RBM33 Gene

Proteins for RBM33 Gene

  • Protein details for RBM33 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96EV2-RBM33_HUMAN
    Recommended name:
    RNA-binding protein 33
    Protein Accession:
    Q96EV2
    Secondary Accessions:
    • A4D244
    • B5MC24
    • Q52LF5
    • Q75LN9
    • Q75ML5
    • Q9NSV0

    Protein attributes for RBM33 Gene

    Size:
    1170 amino acids
    Molecular mass:
    129986 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH93947.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AAH93949.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AAS01989.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=AAS02026.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=AAS07551.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=CAB70894.1; Type=Miscellaneous discrepancy; Note=Intron retention.; Evidence={ECO:0000305}; Sequence=EAL23911.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=EAL23912.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=EAX04539.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for RBM33 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RBM33 Gene

Proteomics data for RBM33 Gene at MOPED

Post-translational modifications for RBM33 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for RBM33 Gene

Domains for RBM33 Gene

Gene Families for RBM33 Gene

HGNC:
  • RBM :RNA binding motif (RRM) containing

Protein Domains for RBM33 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for RBM33 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96EV2

UniProtKB/Swiss-Prot:

RBM33_HUMAN
Domain:
  • Contains 1 RRM (RNA recognition motif) domain.:
    • Q96EV2
genes like me logo Genes that share domains with RBM33: view

Function for RBM33 Gene

Gene Ontology (GO) - Molecular Function for RBM33 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000166 nucleotide binding IEA --
GO:0003676 nucleic acid binding --
GO:0044822 poly(A) RNA binding IDA 22658674
genes like me logo Genes that share ontologies with RBM33: view

miRNA for RBM33 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for RBM33 Gene

Localization for RBM33 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RBM33 Gene COMPARTMENTS Subcellular localization image for RBM33 gene
Compartment Confidence
nucleus 3
cytoskeleton 2
cytosol 2
plasma membrane 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for RBM33 Gene

Pathways for RBM33 Gene

SuperPathways for RBM33 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RBM33 Gene

None

No data available for Pathways by source for RBM33 Gene

Transcripts for RBM33 Gene

Unigene Clusters for RBM33 Gene

RNA binding motif protein 33:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RBM33 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b
SP1:
SP2: -

Relevant External Links for RBM33 Gene

GeneLoc Exon Structure for
RBM33
ECgene alternative splicing isoforms for
RBM33

Expression for RBM33 Gene

mRNA expression in normal human tissues for RBM33 Gene

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for RBM33 Gene

SOURCE GeneReport for Unigene cluster for RBM33 Gene Hs.591815

genes like me logo Genes that share expressions with RBM33: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for RBM33 Gene

Orthologs for RBM33 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RBM33 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RBM33 35
  • 98.85 (n)
  • 98.44 (a)
RBM33 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RBM33 36
  • 82 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RBM33 36
  • 88 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rbm33 16
Rbm33 36
  • 83 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia RBM33 36
  • 77 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RBM33 36
  • 76 (a)
OneToOne
chicken
(Gallus gallus)
Aves RBM33 36
  • 72 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RBM33 36
  • 63 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii RBM33 (1 of 2) 36
  • 39 (a)
OneToMany
RBM33 (2 of 2) 36
  • 24 (a)
OneToMany
Species with no ortholog for RBM33:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RBM33 Gene

ENSEMBL:
Gene Tree for RBM33 (if available)
TreeFam:
Gene Tree for RBM33 (if available)

Paralogs for RBM33 Gene

No data available for Paralogs for RBM33 Gene

Variants for RBM33 Gene

Sequence variations from dbSNP and Humsavar for RBM33 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs984543 -- 155,652,359(-) TTTAA(C/T)GGAAC intron-variant
rs1006524 -- 155,779,312(+) TTGAC(C/T)GATAG utr-variant-3-prime
rs1006525 -- 155,779,507(+) ATTCT(A/C)CAAAG utr-variant-3-prime
rs1109626 -- 155,680,158(-) TATTC(C/T)ATAAG intron-variant
rs1316759 -- 155,733,107(-) ATCAC(C/T)ACAGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RBM33 Gene

Variant ID Type Subtype PubMed ID
esv274974 CNV Loss 21479260
esv2735590 CNV Deletion 23290073
nsv365283 CNV Loss 16902084
esv997138 CNV Insertion 20482838
nsv509227 CNV Insertion 20534489
nsv889560 CNV Loss 21882294
dgv7559n71 CNV Loss 21882294

Relevant External Links for RBM33 Gene

HapMap Linkage Disequilibrium report
RBM33

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RBM33 Gene

Disorders for RBM33 Gene

(1) University of Copenhagen DISEASES for RBM33 Gene

Relevant External Links for RBM33

Genetic Association Database (GAD)
RBM33
genes like me logo Genes that share disorders with RBM33: view

No data available for UniProtKB/Swiss-Prot for RBM33 Gene

Publications for RBM33 Gene

  1. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PMID: 17081983) Olsen J.V. … Mann M. (Cell 2006) 3 4
  2. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer S.W. … Tsui L.-C. (Science 2003) 3 4
  3. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier L.W. … Wilson R.K. (Nature 2003) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for RBM33 Gene

Sources for RBM33 Gene

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