Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RBM26-AS1 Gene

Subcategory (RNA class) for RBM26-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RBM26-AS1 Gene

  • RBM26 Antisense RNA 1 2 3 5
  • RBM26 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for RBM26-AS1 Gene

Previous GeneCards Identifiers for RBM26-AS1 Gene

  • GC13P079982

Summaries for RBM26-AS1 Gene

GeneCards Summary for RBM26-AS1 Gene

RBM26-AS1 (RBM26 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RBM26-AS1 Gene

Genomics for RBM26-AS1 Gene

Regulatory Elements for RBM26-AS1 Gene

Enhancers for RBM26-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F079380 1.3 Ensembl ENCODE 49.1 -24.0 -24019 3.0 PKNOX1 ZNF146 TBX21 ZNF664 PBX2 ETV6 PRDM1 TRIM28 SETDB1 RBM26-AS1 RBM26 LINC01068 RNA5SP33 GC13M079201
GH13F079402 0.2 ENCODE 40.8 -1.3 -1314 5.0 ATF1 PKNOX1 CREB3L1 WRNIP1 ARID4B SIN3A GLI4 DMAP1 ZNF48 BRCA1 RBM26-AS1 RBM26 RNA5SP33
GH13F079481 0.5 ENCODE 38.8 +77.8 77788 7.1 PKNOX1 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF143 ZNF263 RBM26-AS1 LINC01068 RBM26 NDFIP2-AS1
GH13F079448 0.6 Ensembl 38.6 +42.3 42292 0.4 POLR2A ETV1 JUN HMBOX1 REST ETV6 SPI1 RBM26-AS1 LOC105370274 NDFIP2
GH13F079279 0.5 ENCODE 22.2 -126.2 -126214 0.7 RBM26-AS1 LINC01068 GC13M079201 RNA5SP33
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RBM26-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for RBM26-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000518113 -1009 4201 ATF1 PKNOX1 CREB3L1 WRNIP1 ARID4B SIN3A GLI4 DMAP1 ZNF48 BRCA1

Genomic Location for RBM26-AS1 Gene

Chromosome:
13
Start:
79,406,309 bp from pter
End:
79,424,336 bp from pter
Size:
18,028 bases
Orientation:
Plus strand

Genomic View for RBM26-AS1 Gene

Genes around RBM26-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RBM26-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RBM26-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RBM26-AS1 Gene

Proteins for RBM26-AS1 Gene

Post-translational modifications for RBM26-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RBM26-AS1 Gene

Domains & Families for RBM26-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RBM26-AS1 Gene

Function for RBM26-AS1 Gene

Phenotypes for RBM26-AS1 Gene

genes like me logo Genes that share phenotypes with RBM26-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RBM26-AS1 Gene

Localization for RBM26-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RBM26-AS1 Gene

Pathways & Interactions for RBM26-AS1 Gene

SuperPathways for RBM26-AS1 Gene

No Data Available

Interacting Proteins for RBM26-AS1 Gene

Gene Ontology (GO) - Biological Process for RBM26-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RBM26-AS1 Gene

Transcripts for RBM26-AS1 Gene

mRNA/cDNA for RBM26-AS1 Gene

(3) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RBM26-AS1 Gene

RBM26 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RBM26-AS1 Gene

No ASD Table

Relevant External Links for RBM26-AS1 Gene

GeneLoc Exon Structure for
RBM26-AS1
ECgene alternative splicing isoforms for
RBM26-AS1

Expression for RBM26-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RBM26-AS1 Gene

SOURCE GeneReport for Unigene cluster for RBM26-AS1 Gene:

Hs.600720
genes like me logo Genes that share expression patterns with RBM26-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RBM26-AS1 Gene

Orthologs for RBM26-AS1 Gene

Evolution for RBM26-AS1 Gene

ENSEMBL:
Gene Tree for RBM26-AS1 (if available)
TreeFam:
Gene Tree for RBM26-AS1 (if available)

No data available for Orthologs for RBM26-AS1 Gene

Paralogs for RBM26-AS1 Gene

No data available for Paralogs for RBM26-AS1 Gene

Variants for RBM26-AS1 Gene

Sequence variations from dbSNP and Humsavar for RBM26-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs1058190 -- 79,422,798(-) AATCC(A/C)CCATA nc-transcript-variant
rs10596263 -- 79,417,693(+) CTCTA(-/ATC)ATGTA intron-variant
rs111232026 -- 79,421,487(+) GTGTG(C/T)GTATA intron-variant
rs111377995 -- 79,424,587(+) CTGGA(A/G)TGCAG intron-variant
rs112133880 -- 79,418,812(+) TTTTT(-/CT)GAGGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RBM26-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2747706 CNV deletion 23290073
esv2747707 CNV deletion 23290073
esv3632814 CNV gain 21293372
esv3632819 CNV gain 21293372
nsv523979 CNV loss 19592680
nsv64679 CNV deletion 16902084
nsv832657 CNV gain 17160897

Relevant External Links for RBM26-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RBM26-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RBM26-AS1 Gene

Disorders for RBM26-AS1 Gene

Relevant External Links for RBM26-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RBM26-AS1

No disorders were found for RBM26-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RBM26-AS1 Gene

Publications for RBM26-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for RBM26-AS1 Gene

Sources for RBM26-AS1 Gene

Content
Loading form....