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Aliases for RBM25 Gene

Aliases for RBM25 Gene

  • RNA Binding Motif Protein 25 2 3
  • RED120 3 4 6
  • Functional Spliceosome-Associated Protein 94 2 3
  • RNA-Binding Region (RNP1, RRM) Containing 7 2 3
  • RNA-Binding Region-Containing Protein 7 3 4
  • Arg/Glu/Asp-Rich Protein Of 120 KDa 3 4
  • RNA-Binding Motif Protein 25 3 4
  • RNPC7 3 4
  • U1 Small Nuclear Ribonucleoprotein 1SNRP Homolog 3
  • Arg/Glu/Asp-Rich Protein, 120 KDa 3
  • RNA-Binding Protein 25 3
  • Protein S164 4
  • FSAP94 3
  • NET52 3
  • Snu71 3
  • S164 3

External Ids for RBM25 Gene

Previous Symbols for RBM25 Gene

  • RNPC7

Summaries for RBM25 Gene

GeneCards Summary for RBM25 Gene

RBM25 (RNA Binding Motif Protein 25) is a Protein Coding gene. Among its related pathways are Spliceosome. GO annotations related to this gene include nucleotide binding and mRNA binding.

UniProtKB/Swiss-Prot for RBM25 Gene

  • RNA-binding protein that acts as a regulator of alternative pre-mRNA splicing. Involved in apoptotic cell death through the regulation of the apoptotic factor BCL2L1 isoform expression. Modulates the ratio of proapoptotic BCL2L1 isoform S to antiapoptotic BCL2L1 isoform L mRNA expression. When overexpressed, stimulates proapoptotic BCL2L1 isoform S 5-splice site (5-ss) selection, whereas its depletion caused the accumulation of antiapoptotic BCL2L1 isoform L. Promotes BCL2L1 isoform S 5-ss usage through the 5-CGGGCA-3 RNA sequence. Its association with LUC7L3 promotes U1 snRNP binding to a weak 5 ss in a 5-CGGGCA-3-dependent manner. Binds to the exonic splicing enhancer 5-CGGGCA-3 RNA sequence located within exon 2 of the BCL2L1 pre-mRNA. Also involved in the generation of an abnormal and truncated splice form of SCN5A in heart failure.

Gene Wiki entry for RBM25 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RBM25 Gene

Genomics for RBM25 Gene

Genomic Location for RBM25 Gene

Start:
73,058,436 bp from pter
End:
73,123,898 bp from pter
Size:
65,463 bases
Orientation:
Plus strand

Genomic View for RBM25 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RBM25 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RBM25 Gene

Regulatory Elements for RBM25 Gene

Proteins for RBM25 Gene

  • Protein details for RBM25 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P49756-RBM25_HUMAN
    Recommended name:
    RNA-binding protein 25
    Protein Accession:
    P49756
    Secondary Accessions:
    • A0PJL9
    • B2RNA8
    • B3KT03
    • Q2TA72
    • Q5XJ17
    • Q6P665
    • Q9H6A1
    • Q9UEQ5
    • Q9UIE9

    Protein attributes for RBM25 Gene

    Size:
    843 amino acids
    Molecular mass:
    100185 Da
    Quaternary structure:
    • Interacts with LUC7L3 and SRRM1. Specifically associates with functional splicing complexes, including Sm proteins and U1, U2, U4, U5 and U6 snRNAs. Associates with exon junction complex (EJC) proteins, including APEX1, BAT1, NCBP1, RBM8A and RNPS1. Interaction with NCBP1 is RNA-dependent.
    SequenceCaution:
    • Sequence=AAH62440.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAH62440.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305}; Sequence=AAH83496.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAG52915.1; Type=Erroneous translation; Note=Wrong choice of CDS.; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for RBM25 Gene

    Alternative splice isoforms for RBM25 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RBM25 Gene

Proteomics data for RBM25 Gene at MOPED

Post-translational modifications for RBM25 Gene

No data available for DME Specific Peptides for RBM25 Gene

Domains for RBM25 Gene

Gene Families for RBM25 Gene

HGNC:
  • RBM :RNA binding motif (RRM) containing

Protein Domains for RBM25 Gene

UniProtKB/Swiss-Prot:

RBM25_HUMAN
Domain:
  • The PWI domain binds nucleic acids with significant help from its N-terminal flanking basic region. It has an equal preference for binding to single- or double-stranded species, and it contributes to RBM25 role in modulation of alternative splicing, maybe by mediating RNA-dependent association with LUC7L3:
    • P49756
  • Contains 1 PWI domain.:
    • P49756
  • Contains 1 RRM (RNA recognition motif) domain.:
    • P49756
genes like me logo Genes that share domains with RBM25: view

Function for RBM25 Gene

Molecular function for RBM25 Gene

UniProtKB/Swiss-Prot Function: RNA-binding protein that acts as a regulator of alternative pre-mRNA splicing. Involved in apoptotic cell death through the regulation of the apoptotic factor BCL2L1 isoform expression. Modulates the ratio of proapoptotic BCL2L1 isoform S to antiapoptotic BCL2L1 isoform L mRNA expression. When overexpressed, stimulates proapoptotic BCL2L1 isoform S 5-splice site (5-ss) selection, whereas its depletion caused the accumulation of antiapoptotic BCL2L1 isoform L. Promotes BCL2L1 isoform S 5-ss usage through the 5-CGGGCA-3 RNA sequence. Its association with LUC7L3 promotes U1 snRNP binding to a weak 5 ss in a 5-CGGGCA-3-dependent manner. Binds to the exonic splicing enhancer 5-CGGGCA-3 RNA sequence located within exon 2 of the BCL2L1 pre-mRNA. Also involved in the generation of an abnormal and truncated splice form of SCN5A in heart failure.

Gene Ontology (GO) - Molecular Function for RBM25 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000166 nucleotide binding IEA --
GO:0003676 nucleic acid binding --
GO:0003729 mRNA binding IDA 18663000
GO:0005515 protein binding IPI 18663000
GO:0044822 poly(A) RNA binding IDA 22658674
genes like me logo Genes that share ontologies with RBM25: view

Phenotypes for RBM25 Gene

GenomeRNAi human phenotypes for RBM25:
genes like me logo Genes that share phenotypes with RBM25: view

No data available for Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RBM25 Gene

Localization for RBM25 Gene

Subcellular locations from UniProtKB/Swiss-Prot for RBM25 Gene

Nucleus speckle. Cytoplasm. Note=Colocalizes predominantly, with SFRS2 and LUC7L3 splicing factors, in nuclear speckles. Cytoplasmic localization is faint.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RBM25 Gene COMPARTMENTS Subcellular localization image for RBM25 gene
Compartment Confidence
nucleus 5
cytosol 3
chloroplast 1
cytoskeleton 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for RBM25 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus --
GO:0005654 nucleoplasm IDA --
GO:0005681 spliceosomal complex IBA --
GO:0005737 cytoplasm IEA --
GO:0016607 nuclear speck IDA 18663000
genes like me logo Genes that share ontologies with RBM25: view

Pathways for RBM25 Gene

SuperPathways for RBM25 Gene

Superpath Contained pathways
1 Spliceosome
genes like me logo Genes that share pathways with RBM25: view

Pathways by source for RBM25 Gene

1 KEGG pathway for RBM25 Gene

Gene Ontology (GO) - Biological Process for RBM25 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000381 regulation of alternative mRNA splicing, via spliceosome IDA 18663000
GO:0006397 mRNA processing IEA --
GO:0008380 RNA splicing IEA --
GO:0042981 regulation of apoptotic process IDA 18663000
genes like me logo Genes that share ontologies with RBM25: view

Transcripts for RBM25 Gene

Unigene Clusters for RBM25 Gene

RNA binding motif protein 25:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RBM25 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10 ^ 11a · 11b ^ 12 ^ 13 ^ 14 ^ 15a · 15b ^ 16 ^ 17a · 17b · 17c ^ 18 ^
SP1: - - -
SP2: -
SP3:
SP4:
SP5:
SP6: -
SP7:
SP8: -
SP9:

ExUns: 19a · 19b ^ 20 ^ 21 ^ 22a · 22b
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:

Relevant External Links for RBM25 Gene

GeneLoc Exon Structure for
RBM25
ECgene alternative splicing isoforms for
RBM25

Expression for RBM25 Gene

mRNA expression in normal human tissues for RBM25 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for RBM25 Gene

SOURCE GeneReport for Unigene cluster for RBM25 Gene Hs.531106

genes like me logo Genes that share expressions with RBM25: view

Orthologs for RBM25 Gene

This gene was present in the common ancestor of animals.

Orthologs for RBM25 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RBM25 36
  • 99.92 (n)
  • 100 (a)
RBM25 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RBM25 36
  • 93.44 (n)
  • 99.88 (a)
RBM25 37
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RBM25 37
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rbm25 16
Rbm25 37
  • 100 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia RBM25 37
  • 98 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RBM25 37
  • 95 (a)
OneToOne
chicken
(Gallus gallus)
Aves RBM25 36
  • 83.7 (n)
  • 95.71 (a)
RBM25 37
  • 96 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RBM25 37
  • 96 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.1918 36
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.8931 36
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.2941 36
zebrafish
(Danio rerio)
Actinopterygii -- 36
rbm25 37
  • 71 (a)
OneToMany
RBM25 (2 of 2) 37
  • 70 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta CG4119 37
  • 34 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea W04D2.6 37
  • 35 (a)
OneToOne
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.4527 36
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 40 (a)
OneToOne
Species with no ortholog for RBM25:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RBM25 Gene

ENSEMBL:
Gene Tree for RBM25 (if available)
TreeFam:
Gene Tree for RBM25 (if available)

Paralogs for RBM25 Gene

No data available for Paralogs for RBM25 Gene

Variants for RBM25 Gene

Sequence variations from dbSNP and Humsavar for RBM25 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type MAF
rs165936 -- 73,112,673(-) CAAAG(C/G)ATGGG intron-variant
rs165937 -- 73,115,028(-) AGGTT(C/T)CAGTA intron-variant
rs214287 -- 73,119,368(-) gaatg(A/G)cgtga intron-variant
rs214288 -- 73,118,478(-) TTTTC(C/T)GGAGA intron-variant
rs214289 -- 73,110,652(-) cagga(C/G)tttga intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RBM25 Gene

Variant ID Type Subtype PubMed ID
esv2658707 CNV Deletion 23128226
esv27604 CNV Loss 19812545
esv2669446 CNV Deletion 23128226
esv2748862 CNV Deletion 23290073
esv33255 CNV Loss 17666407
esv27860 CNV Loss 19812545
esv2748864 CNV Deletion 23290073
esv2677511 CNV Deletion 23128226

Relevant External Links for RBM25 Gene

HapMap Linkage Disequilibrium report
RBM25

Disorders for RBM25 Gene

No disorders were found for RBM25 Gene.

No data available for UniProtKB/Swiss-Prot for RBM25 Gene

Publications for RBM25 Gene

  1. Cloning of a gene bearing missense mutations in early-onset familial Alzheimer's disease. (PMID: 7596406) Sherrington R. … St George-Hyslop P.H. (Nature 1995) 2 3 4
  2. Toward a complete human genome sequence. (PMID: 9847074) Sulston J.E. … Waterston R. (Genome Res. 1998) 2 3
  3. The DNA sequence and analysis of human chromosome 14. (PMID: 12508121) Heilig R. … Weissenbach J. (Nature 2003) 3 4
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  5. Systematic identification and analysis of mammalian small ubiquitin- like modifier substrates. (PMID: 15561718) Gocke C.B. … Kang J. (J. Biol. Chem. 2005) 3 4

Products for RBM25 Gene

Sources for RBM25 Gene

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