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Aliases for RBM23 Gene

Aliases for RBM23 Gene

  • RNA Binding Motif Protein 23 2 3 5
  • RNA-Binding Region (RNP1, RRM) Containing 4 2 3
  • RNA-Binding Region-Containing Protein 4 3 4
  • Splicing Factor SF2 3 4
  • RNPC4 3 4
  • Coactivator Of Activating Protein-1 And Estrogen Recep- Tors Beta 3
  • Coactivator Of Activating Protein-1 And Estrogen Receptors Beta 2
  • Probable RNA-Binding Protein 23 3
  • RNA-Binding Motif Protein 23 4
  • CAPERbeta 3
  • PP239 3

External Ids for RBM23 Gene

Previous HGNC Symbols for RBM23 Gene

  • RNPC4

Previous GeneCards Identifiers for RBM23 Gene

  • GC14M021361
  • GC14M022439
  • GC14M023369
  • GC14M003486

Summaries for RBM23 Gene

Entrez Gene Summary for RBM23 Gene

  • This gene encodes a member of the U2AF-like family of RNA binding proteins. This protein interacts with some steroid nuclear receptors, localizes to the promoter of a steroid- responsive gene, and increases transcription of steroid-responsive transcriptional reporters in a hormone-dependent manner. It is also implicated in the steroid receptor-dependent regulation of alternative splicing. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

GeneCards Summary for RBM23 Gene

RBM23 (RNA Binding Motif Protein 23) is a Protein Coding gene. GO annotations related to this gene include nucleic acid binding and nucleotide binding. An important paralog of this gene is RBM39.

UniProtKB/Swiss-Prot for RBM23 Gene

  • Probable RNA-binding protein. May be involved in pre-mRNA splicing process.

Gene Wiki entry for RBM23 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RBM23 Gene

Genomics for RBM23 Gene

Regulatory Elements for RBM23 Gene

Enhancers for RBM23 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14G022844 1.9 FANTOM5 ENCODE dbSUPER 10.8 +69.9 69906 9.9 CREB3L1 MLX AGO1 ZFP64 DMAP1 YBX1 FEZF1 YY1 SLC30A9 ZNF143 OXA1L LRP10 REM2 PPP1R3E RBM23 THTPA DAD1 HOMEZ PABPN1 HAUS4
GH14G022976 1.9 FANTOM5 ENCODE dbSUPER 8.2 -60.7 -60719 7.6 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZNF548 PRMT5 HAUS4 LOC102724814 MMP14 PSMB5 C14orf119 CDH24 C14orf93 PSMB11 PABPN1
GH14G022917 1.3 ENCODE dbSUPER 9.6 +0.1 85 3.5 HDGF PKNOX1 CREB3L1 ARNT WRNIP1 SIN3A ZNF2 YY1 ZNF207 FOS HAUS4 RBM23 PRMT5-AS1
GH14G023167 1.5 Ensembl ENCODE dbSUPER 6.5 -249.3 -249251 2.1 FOXA2 ZFP64 ARID4B DMAP1 FEZF1 ZNF48 TCF12 SLC30A9 ZNF207 PAF1 RBM23 RNU6-1138P SLC7A8
GH14G022789 1.8 FANTOM5 Ensembl ENCODE dbSUPER 5 +128.3 128255 3.7 PKNOX1 ATF1 TBL1XR1 ZFP64 BMI1 FEZF1 THRB GATA2 EGR1 ZNF366 SLC7A7 PSMB5 RBM23 LRP10 ACIN1 C14orf119 ENSG00000258458
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RBM23 on UCSC Golden Path with GeneCards custom track

Promoters for RBM23 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000066663 387 1601 HDGF PKNOX1 CREB3L1 ARNT WRNIP1 SIN3A ZNF2 YY1 ZNF207 FOS

Genomic Location for RBM23 Gene

Chromosome:
14
Start:
22,893,206 bp from pter
End:
22,919,187 bp from pter
Size:
25,982 bases
Orientation:
Minus strand

Genomic View for RBM23 Gene

Genes around RBM23 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RBM23 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RBM23 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RBM23 Gene

Proteins for RBM23 Gene

  • Protein details for RBM23 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86U06-RBM23_HUMAN
    Recommended name:
    Probable RNA-binding protein 23
    Protein Accession:
    Q86U06
    Secondary Accessions:
    • D3DS32
    • Q8ND16
    • Q8TB88
    • Q8WY40
    • Q9BUJ1
    • Q9NVV7

    Protein attributes for RBM23 Gene

    Size:
    439 amino acids
    Molecular mass:
    48731 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for RBM23 Gene

    Alternative splice isoforms for RBM23 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RBM23 Gene

Post-translational modifications for RBM23 Gene

  • Ubiquitination at Lys245
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for RBM23 Gene

Domains & Families for RBM23 Gene

Gene Families for RBM23 Gene

Suggested Antigen Peptide Sequences for RBM23 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q86U06

UniProtKB/Swiss-Prot:

RBM23_HUMAN :
  • Belongs to the splicing factor SR family.
Family:
  • Belongs to the splicing factor SR family.
genes like me logo Genes that share domains with RBM23: view

Function for RBM23 Gene

Molecular function for RBM23 Gene

UniProtKB/Swiss-Prot Function:
Probable RNA-binding protein. May be involved in pre-mRNA splicing process.

Gene Ontology (GO) - Molecular Function for RBM23 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding IEA --
GO:0003723 RNA binding IEA --
GO:0005515 protein binding IPI 22365833
genes like me logo Genes that share ontologies with RBM23: view
genes like me logo Genes that share phenotypes with RBM23: view

Animal Model Products

CRISPR Products

miRNA for RBM23 Gene

miRTarBase miRNAs that target RBM23

Inhibitory RNA Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RBM23 Gene

Localization for RBM23 Gene

Subcellular locations from UniProtKB/Swiss-Prot for RBM23 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RBM23 gene
Compartment Confidence
nucleus 5
cytoskeleton 2

Gene Ontology (GO) - Cellular Components for RBM23 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
GO:0016020 membrane IDA 19946888
genes like me logo Genes that share ontologies with RBM23: view

Pathways & Interactions for RBM23 Gene

SuperPathways for RBM23 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RBM23 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006397 mRNA processing IEA --
genes like me logo Genes that share ontologies with RBM23: view

No data available for Pathways by source and SIGNOR curated interactions for RBM23 Gene

Drugs & Compounds for RBM23 Gene

No Compound Related Data Available

Transcripts for RBM23 Gene

Unigene Clusters for RBM23 Gene

RNA binding motif protein 23:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for RBM23 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4a · 4b · 4c ^ 5 ^ 6 ^ 7a · 7b · 7c · 7d ^ 8 ^ 9a · 9b · 9c ^ 10a · 10b · 10c ^ 11 ^ 12a · 12b · 12c ^
SP1: - - - - - - - -
SP2: - - - - - - -
SP3: - - - - - - - - - - -
SP4: - - - - - - - -
SP5: - - - - - - - - - -
SP6: - - - - - - - - -
SP7: - - - - - - -
SP8: - - - - - - -
SP9: - - - - - - - - -
SP10: - - - - - - - - - -
SP11: - - - - - - - -
SP12: - - - - - - - - - - - -
SP13: - - - - - - - - - - -
SP14: - - - - - - -
SP15:
SP16: - - -
SP17: - - - - - - - - - -
SP18: - -
SP19: - - - -
SP20:
SP21:
SP22: -
SP23: - - - - - -

ExUns: 13 ^ 14a · 14b · 14c ^ 15a · 15b · 15c ^ 16 ^ 17 ^ 18
SP1: - - -
SP2:
SP3: - - -
SP4: - - -
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:
SP13:
SP14:
SP15: - - -
SP16:
SP17:
SP18:
SP19:
SP20:
SP21: -
SP22:
SP23:

Relevant External Links for RBM23 Gene

GeneLoc Exon Structure for
RBM23
ECgene alternative splicing isoforms for
RBM23

Expression for RBM23 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RBM23 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for RBM23 Gene

This gene is overexpressed in Liver (56.4) and Lung (11.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for RBM23 Gene



Protein tissue co-expression partners for RBM23 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of RBM23 Gene:

RBM23

SOURCE GeneReport for Unigene cluster for RBM23 Gene:

Hs.4997

Evidence on tissue expression from TISSUES for RBM23 Gene

  • Nervous system(4.9)
  • Muscle(4.3)
  • Lung(2.6)
  • Eye(2.5)
genes like me logo Genes that share expression patterns with RBM23: view

Primer Products

No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for RBM23 Gene

Orthologs for RBM23 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for RBM23 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RBM23 34 35
  • 97.87 (n)
cow
(Bos Taurus)
Mammalia RBM23 34 35
  • 88.38 (n)
dog
(Canis familiaris)
Mammalia RBM23 34 35
  • 87.02 (n)
oppossum
(Monodelphis domestica)
Mammalia RBM23 35
  • 84 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RBM23 35
  • 58 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RBM23 35
  • 68 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rbm23 34
  • 65.12 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG11266 35
  • 36 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea Y55F3AM.3 35
  • 29 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes NOP13 35
  • 21 (a)
ManyToMany
RNA15 35
  • 14 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 43 (a)
OneToMany
Species where no ortholog for RBM23 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • zebrafish (Danio rerio)

Evolution for RBM23 Gene

ENSEMBL:
Gene Tree for RBM23 (if available)
TreeFam:
Gene Tree for RBM23 (if available)

Paralogs for RBM23 Gene

Variants for RBM23 Gene

Sequence variations from dbSNP and Humsavar for RBM23 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs1000158477 -- 22,903,679(+) GCAGC(C/T)AGTTC intron-variant, utr-variant-3-prime
rs1000454408 -- 22,904,867(+) CACTT(A/C)TACTC intron-variant
rs1000533860 -- 22,900,582(+) AATGG(A/G)AACCC downstream-variant-500B
rs1000938717 -- 22,906,603(+) CCAAT(C/T)ATGTA intron-variant
rs1000947209 -- 22,920,194(+) TTCCC(A/G)AGAGG nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RBM23 Gene

Variant ID Type Subtype PubMed ID
dgv385e199 CNV deletion 23128226
esv3633769 CNV loss 21293372

Variation tolerance for RBM23 Gene

Residual Variation Intolerance Score: 85.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 9.04; 87.53% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RBM23 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RBM23

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RBM23 Gene

Disorders for RBM23 Gene

Relevant External Links for RBM23

Human Genome Epidemiology (HuGE) Navigator
RBM23
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RBM23

No disorders were found for RBM23 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RBM23 Gene

Publications for RBM23 Gene

  1. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PMID: 17081983) Olsen J.V. … Mann M. (Cell 2006) 3 4 64
  2. Steroid hormone receptor coactivation and alternative RNA splicing by U2AF65-related proteins CAPERalpha and CAPERbeta. (PMID: 15694343) Dowhan D.H. … O'Malley B.W. (Mol. Cell 2005) 2 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  5. Large-scale cDNA transfection screening for genes related to cancer development and progression. (PMID: 15498874) Wan D. … Gu J. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3 4 64

Products for RBM23 Gene

Sources for RBM23 Gene

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