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RBM14-RBM4 Gene

protein-coding   GIFtS: 17
GCID: GC11P066388

RBM14-RBM4 Readthrough

  Search for RBM14-RBM4
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
RBM14-RBM4 Readthrough1 2
COAZ2
RBM14-RBM4 Protein2
RBM14/RBM4 Fusion2
Transcriptional Coactivator CoAZ2

External Ids:    HGNC: 388401   Entrez Gene: 1005267372   Ensembl: ENSG000002486437   

Export aliases for RBM14-RBM4 gene to outside databases

Previous GC identifer: GC11U901759


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for RBM14-RBM4 Gene:
This locus represents naturally occurring read-through transcription between the neighboring RBM14 (RNA binding
motif protein 14) and RBM4 (RNA binding motif protein 4) genes. Alternative splicing results in multiple
transcript variants, one of which encodes a fusion protein that shares sequence identity with each individual
gene product. This fusion protein contains RRM and zinc finger domains, and it functions to stimulate
transcription in a hormone and receptor-dependent manner. (provided by RefSeq, Nov 2010)

GeneCards Summary for RBM14-RBM4 Gene:
RBM14-RBM4 (RBM14-RBM4 readthrough) is a protein-coding gene. An important paralog of this gene is RBM4.




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Search for regulatory transcription factor binding sites for RBM14-RBM4
         Other transcription factors

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Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat RBM14-RBM4


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11q   Ensembl cytogenetic band:  11q13.2   HGNC cytogenetic band: 11q13.2

RBM14-RBM4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RBM14-RBM4 gene location

GeneLoc information about chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11P066388:  view genomic region     (about GC identifiers)

Start:
66,384,053 bp from pter      End:
66,413,944 bp from pter
Size:
29,892 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
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UniProtKB: --
REFSEQ proteins (2 alternative transcripts): 
NP_001185774.1  NP_001185775.1  

ENSEMBL proteins: 
 ENSP00000388552   ENSP00000395880   ENSP00000421279  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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     Gene Ontology (GO): 2 molecular function terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0003676nucleic acid binding ----
GO:0008270zinc ion binding ----
     
RBM14-RBM4 for ontologies           About GeneDecksing


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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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Interactions:

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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for RBM14-RBM4 gene (2 alternative transcripts): 
NM_001198845.1  NM_001198846.1  

4 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000412278(uc009yrk.3 uc021qmb.1) ENST00000511114 ENST00000421355
ENST00000500635
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GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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RBM14-RBM4 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: --
RBM14-RBM4 Expression
About this image

RBM14-RBM4 Protein expression data from MOPED1, PaxDb2 and MaxQB3 --
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of animals.

Orthologs for RBM14-RBM4 gene from Selected species (see all 12)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
chicken
(Gallus gallus)
Aves --
Uncharacterized protein
53(a)
1 → many
JH375703.1(4929-7849)
lizard
(Anolis carolinensis)
Reptilia --
Uncharacterized protein
52(a)
1 → many
GL343961.1(42871-54220)
zebrafish
(Danio rerio)
Actinopterygii rbm4.36
rbm4.26
(see all 4)
RNA binding motif protein 4.2
(see all 4)
34(a)
34(a)
(see all 4)
many ↔ many
many ↔ many
(see all 4)
7(23959223-23962192) ENSDARG00000022129
7(23963174-23967956) ENSDARG00000055080
fruit fly
(Drosophila melanogaster)
Insecta lark6
lark
28(a)
1 → many
3L(7332366-7334996)
worm
(Caenorhabditis elegans)
Secernentea rnp-16
Protein RNP-1, isoform a (rnp-1) mRNA, complete cd...
20(a)
1 → many
V(12192275-12194445) WBGene00004384
        Species with no ortholog for RBM14-RBM4

ENSEMBL Gene Tree for RBM14-RBM4 (if available)
TreeFam Gene Tree for RBM14-RBM4 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for RBM14-RBM4 gene
RBM42  RBM4B2  RBM142  

RBM14-RBM4 for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for RBM14-RBM4 (see all 120)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 11 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1480425231,2
--66397912(+) CCAGCC/TGTGGT 2 -- int10--------
rs1848299621,2
--66397947(+) TCCAGC/GTGAGG 2 -- int10--------
rs1905334601,2
--66398043(+) ACCCCA/GTCTGA 2 -- int10--------
rs1387946121,2
C--66398061(+) ATAAA-/AACCAACA 2 -- int10--------
rs1997686281,2
--66398065(+) AAACA-/ACAACAA 2 -- int10--------
rs1818189431,2
--66398068(+) CAACAA/GCAAAA 2 -- int10--------
rs1853613031,2
--66398091(+) TTGGTA/GTAGAC 2 -- int10--------
rs1113298301,2
F--66398211(+) ACCTCA/CGGCTC 2 -- int12Minor allele frequency- C:0.05CSA WA 120
rs1453080971,2
C--66398269(+) CTCCC-/TCTTCTTG 2 -- int10--------
rs1425761811,2
C--66398297(+) ACATAC/TTAGGA 2 -- int10--------

HapMap Linkage Disequilibrium report for RBM14-RBM4 (66384053 - 66413944 bp)

Structural Variations
     Database of Genomic Variants (DGV) 5 variations for RBM14-RBM4:    About this table    
Variant IDTypeSubtypePubMed ID
nsv363CNV Insertion18451855
nsv522277CNV Loss19592680
nsv518919CNV Loss19592680
nsv897789CNV Gain21882294
esv990794OTHER Inversion20482838

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for RBM14-RBM4 gene integrated from 10 sources:
(articles sorted by number of sources associating them with RBM14-RBM4)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Pathway Analysis of ChIP-Seq-Based NRF1 Target Genes Suggests a Logical Hypothesis of their Involvement in the Pathogenesis of Neurodegenerative Diseases. (PubMed id 24250222)1 Satoh J....Yamamoto Y. (Gene Regul Syst Bio 2013)
  2. Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (amp 2012)
  3. Global identification of modular cullin-RING ligase substrates. (PubMed id 21963094)1 Emanuele M.J....Elledge S.J. (Cell 2011)
  4. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PubMed id 20967262)1 Prakash T....Taylor T.D. (PLoS ONE 2010)
  5. Functional pre- mRNA trans-splicing of coactivator CoAA and corepressor RBM4 during stem/progenitor cell differentiation. (PubMed id 19416963)1 Brooks Y.S.... Ko L. (J. Biol. Chem. 2009)
  6. The sequence of the human genome. (PubMed id 11181995)1 Venter J.C.... Zhu X. (Science 2001)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 100526737 HGNC: 38840 Ensembl:ENSG00000248643 euGenes: HUgn100526737 ECgene: RBM14-RBM4
H-InvDB: RBM14-RBM4

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for RBM14-RBM4 gene:
Search GeneIP for patents involving RBM14-RBM4

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
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The GeneCards human gene database gene index: 1 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

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