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Aliases for RBM12B-AS1 Gene

Subcategory (RNA class) for RBM12B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RBM12B-AS1 Gene

  • RBM12B Antisense RNA 1 2 3 4 5
  • RBM12B Antisense RNA 1 (Non-Protein Coding) 2 3
  • C8orf39 3 4
  • Chromosome 8 Open Reading Frame 39 2
  • RBM12B Antisense Gene Protein 1 4
  • PRO1905 3

External Ids for RBM12B-AS1 Gene

Previous HGNC Symbols for RBM12B-AS1 Gene

  • C8orf39

Previous GeneCards Identifiers for RBM12B-AS1 Gene

  • GC08P094754

Summaries for RBM12B-AS1 Gene

GeneCards Summary for RBM12B-AS1 Gene

RBM12B-AS1 (RBM12B Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RBM12B-AS1 Gene

Genomics for RBM12B-AS1 Gene

Regulatory Elements for RBM12B-AS1 Gene

Enhancers for RBM12B-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F093738 0.6 ENCODE 0.8 +0.1 111 3.4 HDGF ATF1 ARNT CREB3L1 WRNIP1 ZNF133 ZFP64 ARID4B SIN3A DMAP1 LOC105375645 KIAA1429 RBM12B RBM12B-AS1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RBM12B-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for RBM12B-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001443050 189 3001 HDGF ATF1 ARNT CREB3L1 WRNIP1 ZNF133 ZFP64 ARID4B SIN3A DMAP1

Genomic Location for RBM12B-AS1 Gene

Chromosome:
8
Start:
93,740,111 bp from pter
End:
93,740,819 bp from pter
Size:
709 bases
Orientation:
Plus strand

Genomic View for RBM12B-AS1 Gene

Genes around RBM12B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RBM12B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RBM12B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RBM12B-AS1 Gene

Proteins for RBM12B-AS1 Gene

  • Protein details for RBM12B-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9P1G2-RBAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by RBM12B-AS1
    Protein Accession:
    Q9P1G2

    Protein attributes for RBM12B-AS1 Gene

    Size:
    102 amino acids
    Molecular mass:
    11378 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RBM12B-AS1 Gene

Post-translational modifications for RBM12B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RBM12B-AS1 Gene

Domains & Families for RBM12B-AS1 Gene

Protein Domains for RBM12B-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RBM12B-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RBM12B-AS1 Gene

Function for RBM12B-AS1 Gene

Phenotypes for RBM12B-AS1 Gene

GenomeRNAi human phenotypes for RBM12B-AS1:
genes like me logo Genes that share phenotypes with RBM12B-AS1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RBM12B-AS1 Gene

Localization for RBM12B-AS1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RBM12B-AS1 Gene COMPARTMENTS Subcellular localization image for RBM12B-AS1 gene
Compartment Confidence
nucleus 3
cytosol 1
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for RBM12B-AS1 Gene

Pathways & Interactions for RBM12B-AS1 Gene

SuperPathways for RBM12B-AS1 Gene

No Data Available

Interacting Proteins for RBM12B-AS1 Gene

Selected Interacting proteins: Q9P1G2-RBAS1_HUMAN for RBM12B-AS1 Gene via IID

Symbol External ID(s) Details
HDAC11

Gene Ontology (GO) - Biological Process for RBM12B-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RBM12B-AS1 Gene

Transcripts for RBM12B-AS1 Gene

mRNA/cDNA for RBM12B-AS1 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RBM12B-AS1 Gene

RBM12B antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RBM12B-AS1 Gene

No ASD Table

Relevant External Links for RBM12B-AS1 Gene

GeneLoc Exon Structure for
RBM12B-AS1
ECgene alternative splicing isoforms for
RBM12B-AS1

Expression for RBM12B-AS1 Gene

mRNA expression in normal human tissues for RBM12B-AS1 Gene

Protein differential expression in normal tissues from HIPED for RBM12B-AS1 Gene

This gene is overexpressed in Platelet (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for RBM12B-AS1 Gene



Protein tissue co-expression partners for RBM12B-AS1 Gene

SOURCE GeneReport for Unigene cluster for RBM12B-AS1 Gene:

Hs.192788
genes like me logo Genes that share expression patterns with RBM12B-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for RBM12B-AS1 Gene

Orthologs for RBM12B-AS1 Gene

Evolution for RBM12B-AS1 Gene

ENSEMBL:
Gene Tree for RBM12B-AS1 (if available)
TreeFam:
Gene Tree for RBM12B-AS1 (if available)

No data available for Orthologs for RBM12B-AS1 Gene

Paralogs for RBM12B-AS1 Gene

No data available for Paralogs for RBM12B-AS1 Gene

Variants for RBM12B-AS1 Gene

Sequence variations from dbSNP and Humsavar for RBM12B-AS1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs113572199 -- 93,740,229(+) GGAAG(A/C)ACTGT intron-variant, nc-transcript-variant, upstream-variant-2KB
rs139778878 -- 93,739,737(+) GAAGA(A/C)AATAA intron-variant, upstream-variant-2KB
rs142183929 -- 93,741,300(+) AGTTA(A/T)GGAAA nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB
rs143935312 -- 93,741,178(+) GGGAC(C/T)TCGAC downstream-variant-500B, upstream-variant-2KB
rs144047733 -- 93,741,056(+) CAACC(A/C)ACCAC downstream-variant-500B, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RBM12B-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1022473 CNV loss 25217958
nsv6309 CNV insertion 18451855
nsv831399 CNV loss 17160897

Variation tolerance for RBM12B-AS1 Gene

Gene Damage Index Score: 10.00; 89.99% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RBM12B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RBM12B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RBM12B-AS1 Gene

Disorders for RBM12B-AS1 Gene

Relevant External Links for RBM12B-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RBM12B-AS1

No disorders were found for RBM12B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RBM12B-AS1 Gene

Publications for RBM12B-AS1 Gene

  1. DNA sequence and analysis of human chromosome 8. (PMID: 16421571) Nusbaum C. … Lander E.S. (Nature 2006) 4 64

Products for RBM12B-AS1 Gene

Sources for RBM12B-AS1 Gene

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