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RBM12B Gene

protein-coding   GIFtS: 45
GCID: GC08M094743

RNA Binding Motif Protein 12B

  Search for RBM12B
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
RNA Binding Motif Protein 12B1 2
RNA-Binding Motif Protein 12B2 3
MGC:338372
RNA-Binding Protein 12B2

External Ids:    HGNC: 323101   Entrez Gene: 3896772   Ensembl: ENSG000001838087   UniProtKB: Q8IXT53   

Export aliases for RBM12B gene to outside databases

Previous GC identifers: GC08M094813 GC08M089951


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for RBM12B Gene:
RBM12B (RNA binding motif protein 12B) is a protein-coding gene. GO annotations related to this gene include RNA binding and nucleotide binding. An important paralog of this gene is HNRNPH3.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000008.10  NT_008046.17  NC_018919.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the RBM12B gene promoter:
         STAT1   STAT4   STAT1beta   STAT5A   STAT1alpha   POU2F1   STAT2   POU2F1a   Sox9   STAT3   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidRBM12B promoter sequence
   Search Chromatin IP Primers for RBM12B

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat RBM12B


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 8q22.1   Ensembl cytogenetic band:  8q22.1   HGNC cytogenetic band: 8q22

RBM12B Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RBM12B gene location

GeneLoc information about chromosome 8         GeneLoc Exon Structure

GeneLoc location for GC08M094743:  view genomic region     (about GC identifiers)

Start:
94,741,584 bp from pter      End:
94,753,245 bp from pter
Size:
11,662 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: RB12B_HUMAN, Q8IXT5 (See protein sequence)
Recommended Name: RNA-binding protein 12B  
Size: 1001 amino acids; 118103 Da
Secondary accessions: A8MYB5

Explore the universe of human proteins at neXtProt for RBM12B: NX_Q8IXT5

Explore proteomics data for RBM12B at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See RBM12B Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_976324.2  
    ENSEMBL proteins: 
     ENSP00000382239   ENSP00000427729   ENSP00000430474   ENSP00000428269   ENSP00000429807  
     ENSP00000430466  

    RBM12B Human Recombinant Protein Products:

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    Cloud-Clone Corp. Proteins for RBM12B

     
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    Cloud-Clone Corp. ELISAs for RBM12B
    Cloud-Clone Corp. CLIAs for RBM12B
    Search eBioscience for ELISAs for RBM12B 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    RBM: RNA binding motif (RRM) containing

    2 InterPro protein domains:
     IPR012677 Nucleotide-bd_a/b_plait
     IPR000504 RRM_dom

    Graphical View of Domain Structure for InterPro Entry Q8IXT5

    ProtoNet protein and cluster: Q8IXT5

    UniProtKB/Swiss-Prot: RB12B_HUMAN, Q8IXT5
    Similarity: Contains 4 RRM (RNA recognition motif) domains


    Find genes that share domains with RBM12B           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 5 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000166nucleotide binding IEA--
    GO:0003676nucleic acid binding ----
    GO:0003723RNA binding ----
    GO:0005515protein binding IPI--
    GO:0044822poly(A) RNA binding IDA--
         
    Find genes that share ontologies with RBM12B           About GenesLikeMe


    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for RBM12B
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    miRNA
    Products:
        
    miRTarBase miRNAs that target RBM12B:
    hsa-mir-26b-5p (MIRT029115), hsa-mir-20a-5p (MIRT050626), hsa-mir-17-5p (MIRT051049), hsa-mir-1 (MIRT023575), hsa-mir-186-5p (MIRT021106), hsa-mir-10a-5p (MIRT025617), hsa-mir-106b-5p (MIRT044375), hsa-mir-590-3p (MIRT016226), hsa-let-7b-5p (MIRT032302)

    Block miRNA regulation of human, mouse, rat RBM12B using miScript Target Protectors
    Selected qRT-PCR Assays for microRNAs that regulate RBM12B (see all 39):
    hsa-miR-411* hsa-miR-26a-2* hsa-miR-379* hsa-miR-300 hsa-miR-429 hsa-miR-513a-5p hsa-miR-548l hsa-miR-3908
    SwitchGear 3'UTR luciferase reporter plasmidRBM12B 3' UTR sequence
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat RBM12B

    Gene Editing
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RBM12B


    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    endoplasmic reticulum2
    extracellular2
    golgi apparatus1

    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for RBM12B
    Interactions:

        Search GeneGlobe Interaction Network for RBM12B

    STRING Interaction Network Preview (showing 5 interactants - click image to see 6)

    Selected Interacting proteins for RBM12B (Q8IXT51, 3 ENSP000003822394) via UniProtKB, MINT, STRING, and/or I2D (see all 7)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    CACNA1AO005551, 3EBI-3044077,EBI-766279 I2D: score=1 
    MAP1LC3AQ9H4923, ENSP000003639704I2D: score=1 STRING: ENSP00000363970
    SUMO2ENSP000004059654STRING: ENSP00000405965
    CCAR1ENSP000002658724STRING: ENSP00000265872
    USO1ENSP000004116984STRING: ENSP00000411698
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for RBM12B (RB12B)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for RBM12B gene: 
    NM_203390.2  

    Unigene Cluster for RBM12B:

    RNA binding motif protein 12B
    Hs.606916  [show with all ESTs]
    Unigene Representative Sequence: NM_203390
    7 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000399300(uc003yfz.3) ENST00000517700 ENST00000520961 ENST00000519109
    ENST00000518597 ENST00000520560 ENST00000521947
    miRNA
    Products:
         
    Block miRNA regulation of human, mouse, rat RBM12B using miScript Target Protectors
    Selected qRT-PCR Assays for microRNAs that regulate RBM12B (see all 39):
    hsa-miR-411* hsa-miR-26a-2* hsa-miR-379* hsa-miR-300 hsa-miR-429 hsa-miR-513a-5p hsa-miR-548l hsa-miR-3908
    SwitchGear 3'UTR luciferase reporter plasmidRBM12B 3' UTR sequence
    Inhib. RNA
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    Primer
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    OriGene qPCR primer pairs and template standards for RBM12B
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    Pre-validated RT2 qPCR Primer Assay in human, mouse / rat RBM12B
      QuantiTect SYBR Green Assays in human, mouse, rat RBM12B
      QuantiFast Probe-based Assays in human, mouse, rat RBM12B

    Additional mRNA sequence: BC039260.1 

    5 DOTS entries:

    DT.442203  DT.121467836  DT.102829155  DT.95346106  DT.100654411 

    Selected AceView cDNA sequences (see all 70):

    BM713201 BU506977 BM713325 CD678930 CD678931 BU790011 AI810636 BX345112 
    BX387160 BX462881 AA406490 BU681085 BE549821 AI913932 BX488985 BX431733 
    CA950671 BG944479 BX095016 W23872 BX341143 BQ069253 AA922008 AA314461 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    RBM12B expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: ATTGACTTTG
    RBM12B Expression
    About this image


    RBM12B expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 2) fully expand
     
     Testis (Reproductive System)
             Secondary Spermatocyte Seminiferous Tubules
     
     Gonad
             Secondary Spermatocyte Seminiferous Tubules
    RBM12B Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    RBM12B Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.606916
        Custom PCR Arrays for RBM12B
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RBM12B

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals.

    Orthologs for RBM12B gene from Selected species (see all 15)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Rbm12b21 , 5 RIKEN cDNA C430048L16 gene5
    RNA binding motif protein 12 B21
    82.59(n)1
    75.93(a)1
      4 (5.58 cM)5
    776041  NM_198957.21  NP_945195.11 
     120894395 
    chicken
    (Gallus gallus)
    Aves RBM12B1 RNA binding motif protein 12B 69.11(n)
    60.2(a)
      420223  NM_001030944.1  NP_001026115.1 
    lizard
    (Anolis carolinensis)
    Reptilia RBM12B6
    RNA binding motif protein 12B
    38(a)
    1 ↔ 1
    4(18705456-18724572)
    African clawed frog
    (Xenopus laevis)
    Amphibia BC060345.12   -- 75.73(n)    BC060345.1 
    zebrafish
    (Danio rerio)
    Actinopterygii zgc:561481 zgc:56148 53.99(n)
    43.23(a)
      334496  XM_003200159.1  XP_003200207.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG78796
    --
    17(a)
    1 → many
    3L(1559813-1568608)
    worm
    (Caenorhabditis elegans)
    Secernentea Y106G6D.76
    Protein Y106G6D.7 (Y106G6D.7) mRNA, complete cds
    15(a)
    1 → many
    I(10122471-10130216) WBGene00013703


    ENSEMBL Gene Tree for RBM12B (if available)
    TreeFam Gene Tree for RBM12B (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for RBM12B gene
    HNRNPH32  ESRP12  HNRNPH22  GRSF12  ESRP22  HNRNPH12  HNRNPF2  RBM122  
    2 SIMAP similar genes for RBM12B using alignment to 6 protein entries:     RB12B_HUMAN (see all proteins):
    RBM12    HNRNPH1

    Find genes that share paralogs with RBM12B           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for RBM12B (see all 234)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 8 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1931947211,2
    --94743230(+) CAAATA/CATAAA 1 -- int10--------
    rs1398699021,2
    C--94743292(+) CTGAGA/GCAGGA 1 -- int10--------
    rs1846826901,2
    --94743349(+) GACCAC/TTGCAC 1 -- int10--------
    rs1494326041,2
    --94743477(+) ATGCAA/GTTCCA 1 -- int10--------
    rs1899535831,2
    --94743549(+) TTTTTA/TAACTT 1 -- int10--------
    rs1813478001,2
    --94743573(+) CAAAAA/TGGGTG 1 -- int10--------
    rs358686371,2
    C,F--94743876(+) CTGACA/GAAGTA 1 -- ut314Minor allele frequency- G:0.03NA 126
    rs1835026091,2
    --94743929(+) TGTAAA/GTTTAA 1 -- ut310--------
    rs1448161421,2
    --94744343(+) CCCCAC/TGATTT 1 -- ut310--------
    rs1881832341,2
    --94744420(+) AAATAA/GAGGTA 1 -- ut310--------

    HapMap Linkage Disequilibrium report for RBM12B (94741584 - 94753245 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 4 variations for RBM12B:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv6309CNV Insertion18451855
    nsv831399CNV Loss17160897
    dgv7834n71CNV Loss21882294
    nsv528872CNV Loss19592680

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing RBM12B
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for RBM12B gene, integrated from 10 sources (see all 16):
    (articles sorted by number of sources associating them with RBM12B)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)1, 2 Olsen J.V....Mann M. (Cell 2006)
    2. Pathway Analysis of ChIP-Seq-Based NRF1 Target Genes Suggests a Logical Hypothesis of their Involvement in the Pathogenesis of Neurodegenerative Diseases. (PubMed id 24250222)1 Satoh J....Yamamoto Y. (Gene Regul Syst Bio 2013)
    3. The functional interactome landscape of the human histone deacetylase family. (PubMed id 23752268)1 Joshi P....Cristea I.M. (Mol. Syst. Biol. 2013)
    4. A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (Cell 2012)
    5. CEP192 interacts physically and functionally with the K63-deubiquitinase CYLD to promote mitotic spindle assembly. (PubMed id 22895009)1 Gomez-Ferreria M.A....Pelletier L. (Cell Cycle 2012)
    6. Comparison of an expanded ataxia interactome with patient medical records reveals a relationship between macular degeneration and ataxia. (PubMed id 21078624)1 Kahle J.J....Zoghbi H.Y. (Hum. Mol. Genet. 2011)
    7. System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation. (PubMed id 21406692)2 Rigbolt K.T....Blagoev B. (Sci. Signal. 2011)
    8. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (amp 2011)
    9. Purification and identification of endogenous polySUMO conjugates. (PubMed id 21252943)1 Bruderer R....Hay R.T. (EMBO Rep. 2011)
    10. Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. (PubMed id 20068231)2 Olsen J.V....Mann M. (Sci. Signal. 2010)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 389677 HGNC: 32310 AceView: LOC389677 Ensembl:ENSG00000183808 euGenes: HUgn389677
    ECgene: RBM12B H-InvDB: RBM12B

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
    About This Section

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    NameDescription
    PharmGKB entry for RBM12B Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for RBM12B gene:
    Search GeneIP for patents involving RBM12B

    GeneCards and IP:
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