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Aliases for RBFADN Gene

Subcategory (RNA class) for RBFADN Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RBFADN Gene

  • RBFA Downstream Neighbor (Non-Protein Coding) 2 3
  • RP11-795F19.1 5

External Ids for RBFADN Gene

Previous GeneCards Identifiers for RBFADN Gene

  • GC18P077799
  • GC18P077808

Summaries for RBFADN Gene

GeneCards Summary for RBFADN Gene

RBFADN (RBFA Downstream Neighbor (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RBFADN Gene

Genomics for RBFADN Gene

Regulatory Elements for RBFADN Gene

Enhancers for RBFADN Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH18F080032 1.1 ENCODE 36.8 -12.6 -12583 3.1 HDGF ATF1 PKNOX1 CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF48 ZNF2 RBFADN TXNL4A RBFA ENSG00000267251 ADNP2 HSBP1L1 PQLC1 ENSG00000267127
GH18F079959 1.5 FANTOM5 Ensembl ENCODE 26.6 -85.2 -85249 4.0 HDGF HDAC1 PKNOX1 KLF17 FEZF1 DMAP1 RAD21 CBX5 ZNF143 CREM HSBP1L1 RBFADN RBFA TXNL4A PQLC1
GH18F080009 1 Ensembl ENCODE 34.6 -36.4 -36407 1.3 PKNOX1 JUN MAX CEBPG IRF9 HIC1 NFYB TRIM24 FOS MAFK RBFADN TXNL4A PQLC1 HSBP1L1
GH18F080103 0.9 Ensembl ENCODE 34.7 +57.5 57537 1.9 FOXA3 NRF1 BHLHE40 TEAD4 KAT8 IKZF1 NBN FOS HES1 RBFADN ADNP2 SLC25A6P4
GH18F079981 0.9 Ensembl ENCODE 33.2 -64.1 -64138 1.7 BCOR ZNF263 RFX1 ZFP37 ZNF316 ZBTB33 NFE2 MAFK SPI1 RBFADN RBFA HSBP1L1 TXNL4A
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RBFADN on UCSC Golden Path with GeneCards custom track

Genomic Location for RBFADN Gene

Chromosome:
18
Start:
80,046,900 bp from pter
End:
80,095,482 bp from pter
Size:
48,583 bases
Orientation:
Plus strand

Genomic View for RBFADN Gene

Genes around RBFADN on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RBFADN Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RBFADN Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RBFADN Gene

Proteins for RBFADN Gene

Post-translational modifications for RBFADN Gene

No Post-translational modifications

No data available for DME Specific Peptides for RBFADN Gene

Domains & Families for RBFADN Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RBFADN Gene

Function for RBFADN Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RBFADN Gene

Localization for RBFADN Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RBFADN Gene

Pathways & Interactions for RBFADN Gene

SuperPathways for RBFADN Gene

No Data Available

Interacting Proteins for RBFADN Gene

Gene Ontology (GO) - Biological Process for RBFADN Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RBFADN Gene

Transcripts for RBFADN Gene

mRNA/cDNA for RBFADN Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RBFADN Gene

No ASD Table

Relevant External Links for RBFADN Gene

GeneLoc Exon Structure for
RBFADN
ECgene alternative splicing isoforms for
RBFADN

Expression for RBFADN Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RBFADN Gene

NURSA nuclear receptor signaling pathways regulating expression of RBFADN Gene:

RBFADN
genes like me logo Genes that share expression patterns with RBFADN: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RBFADN Gene

Orthologs for RBFADN Gene

Evolution for RBFADN Gene

ENSEMBL:
Gene Tree for RBFADN (if available)
TreeFam:
Gene Tree for RBFADN (if available)

No data available for Orthologs for RBFADN Gene

Paralogs for RBFADN Gene

No data available for Paralogs for RBFADN Gene

Variants for RBFADN Gene

Sequence variations from dbSNP and Humsavar for RBFADN Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type
rs111255699 -- 80,071,806(+) GGTTC(C/G)CTGTG intron-variant
rs111582497 -- 80,071,697(+) GTTCC(C/T)TGTGC intron-variant
rs111721007 -- 80,071,624(+) GTTCC(C/T)TGTGC intron-variant
rs111721192 -- 80,076,295(+) CTCCT(A/T)ATGAG intron-variant
rs111829568 -- 80,071,829(+) TCACC(C/T)CCCGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RBFADN Gene

Variant ID Type Subtype PubMed ID
nsv577969 CNV loss 21841781
nsv577964 CNV gain 21841781
nsv577963 CNV gain 21841781
nsv577962 CNV gain 21841781
nsv577961 CNV gain+loss 21841781
nsv577958 CNV gain 21841781
nsv470437 CNV loss 18288195
nsv428359 CNV gain 18775914
nsv1153247 CNV insertion 26484159
nsv1132885 CNV insertion 24896259
nsv1065902 CNV gain 25217958
nsv1062512 CNV gain 25217958
nsv1061450 CNV gain 25217958
esv3643326 CNV loss 21293372
esv3445979 CNV duplication 20981092
esv29747 CNV loss 19812545
esv23876 CNV loss 19812545
esv1593592 CNV insertion 17803354
esv1134300 CNV insertion 17803354
dgv6130n54 CNV loss 21841781
dgv3413n100 CNV gain 25217958

Relevant External Links for RBFADN Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RBFADN

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RBFADN Gene

Disorders for RBFADN Gene

Relevant External Links for RBFADN

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RBFADN

No disorders were found for RBFADN Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RBFADN Gene

Publications for RBFADN Gene

  1. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  3. Large-scale concatenation cDNA sequencing. (PMID: 9110174) Yu W. … Gibbs R.A. (Genome Res. 1997) 3 64
  4. A "double adaptor" method for improved shotgun library construction. (PMID: 8619474) Andersson B. … Gibbs R.A. (Anal. Biochem. 1996) 3 64
  5. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for RBFADN Gene

Sources for RBFADN Gene

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