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Aliases for RBFA Gene

Aliases for RBFA Gene

  • Ribosome Binding Factor A (Putative) 2 3
  • C18orf22 3 4
  • Putative Ribosome-Binding Factor A, Mitochondrial 3
  • Chromosome 18 Open Reading Frame 22 2
  • HsT169 3

External Ids for RBFA Gene

Previous HGNC Symbols for RBFA Gene

  • C18orf22

Previous GeneCards Identifiers for RBFA Gene

  • GC18P077795

Summaries for RBFA Gene

GeneCards Summary for RBFA Gene

RBFA (Ribosome Binding Factor A (Putative)) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RBFA Gene

Genomics for RBFA Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for RBFA Gene

Start:
80,034,346 bp from pter
End:
80,050,652 bp from pter
Size:
16,307 bases
Orientation:
Plus strand

Genomic View for RBFA Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RBFA Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RBFA Gene

No data available for Regulatory Elements for RBFA Gene

Proteins for RBFA Gene

  • Protein details for RBFA Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N0V3-RBFA_HUMAN
    Recommended name:
    Putative ribosome-binding factor A, mitochondrial
    Protein Accession:
    Q8N0V3
    Secondary Accessions:
    • Q6PF07
    • Q8WZ65
    • Q9H776

    Protein attributes for RBFA Gene

    Size:
    343 amino acids
    Molecular mass:
    38359 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for RBFA Gene

    Alternative splice isoforms for RBFA Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RBFA Gene

Proteomics data for RBFA Gene at MOPED

Post-translational modifications for RBFA Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RBFA Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RBFA Gene

Domains for RBFA Gene

Suggested Antigen Peptide Sequences for RBFA Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8N0V3

UniProtKB/Swiss-Prot:

RBFA_HUMAN :
  • Q8N0V3
Family:
  • Belongs to the RbfA family.
genes like me logo Genes that share domains with RBFA: view

No data available for Gene Families for RBFA Gene

Function for RBFA Gene

Gene Ontology (GO) - Molecular Function for RBFA Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with RBFA: view

Phenotypes for RBFA Gene

GenomeRNAi human phenotypes for RBFA:
genes like me logo Genes that share phenotypes with RBFA: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RBFA

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RBFA Gene

Localization for RBFA Gene

Subcellular locations from UniProtKB/Swiss-Prot for RBFA Gene

Mitochondrion.

Gene Ontology (GO) - Cellular Components for RBFA Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
GO:0005739 mitochondrion IEA --
genes like me logo Genes that share ontologies with RBFA: view

No data available for Subcellular locations from COMPARTMENTS for RBFA Gene

Pathways for RBFA Gene

SuperPathways for RBFA Gene

No Data Available

Gene Ontology (GO) - Biological Process for RBFA Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006364 rRNA processing IEA --
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with RBFA: view

No data available for Pathways by source for RBFA Gene

Transcripts for RBFA Gene

Unigene Clusters for RBFA Gene

Ribosome binding factor A (putative):
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RBFA

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for RBFA
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RBFA Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b · 3c ^ 4 ^ 5 ^ 6 ^ 7a · 7b
SP1: -
SP2: - -
SP3: -
SP4:

Relevant External Links for RBFA Gene

GeneLoc Exon Structure for
RBFA
ECgene alternative splicing isoforms for
RBFA

Expression for RBFA Gene

mRNA expression in normal human tissues for RBFA Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for RBFA Gene

SOURCE GeneReport for Unigene cluster for RBFA Gene Hs.728931

genes like me logo Genes that share expressions with RBFA: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for RBFA Gene

Orthologs for RBFA Gene

This gene was present in the common ancestor of animals.

Orthologs for RBFA Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RBFA 35
  • 99.55 (n)
  • 99.33 (a)
RBFA 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RBFA 35
  • 75.87 (n)
  • 70.28 (a)
RBFA 36
  • 67 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RBFA 35
  • 70.63 (n)
  • 62.83 (a)
RBFA 36
  • 57 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rbfa 35
  • 72.1 (n)
  • 63.08 (a)
Rbfa 16
Rbfa 36
  • 57 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia RBFA 36
  • 49 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RBFA 36
  • 49 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rbfa 35
  • 72.35 (n)
  • 63.23 (a)
chicken
(Gallus gallus)
Aves RBFA 35
  • 55.95 (n)
  • 42.53 (a)
RBFA 36
  • 37 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RBFA 36
  • 37 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii rbfa 35
  • 56.5 (n)
  • 44.49 (a)
rbfa 36
  • 32 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG15916 36
  • 24 (a)
OneToOne
Species with no ortholog for RBFA:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RBFA Gene

ENSEMBL:
Gene Tree for RBFA (if available)
TreeFam:
Gene Tree for RBFA (if available)

Paralogs for RBFA Gene

Pseudogenes.org Pseudogenes for RBFA Gene

genes like me logo Genes that share paralogs with RBFA: view

No data available for Paralogs for RBFA Gene

Variants for RBFA Gene

Sequence variations from dbSNP and Humsavar for RBFA Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type MAF
rs748337 -- 80,037,321(+) TCTTC(C/T)TGATG intron-variant
rs748338 - 80,037,492(+) TTAAC(A/G)TGGAG missense, reference
rs1320693 -- 80,046,509(+) GGGGT(A/G)AGAAC utr-variant-3-prime
rs2096966 -- 80,032,450(+) gtctc(C/G)ccctt upstream-variant-2KB
rs2105717 -- 80,032,676(+) ctcta(C/T)taaaa upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RBFA Gene

Variant ID Type Subtype PubMed ID
nsv428359 CNV Gain 18775914
nsv910009 CNV Loss 21882294
nsv470437 CNV Loss 18288195
nsv910065 CNV Gain 21882294
esv28269 CNV Gain 19812545

Relevant External Links for RBFA Gene

HapMap Linkage Disequilibrium report
RBFA
Human Gene Mutation Database (HGMD)
RBFA

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RBFA Gene

Disorders for RBFA Gene

No disorders were found for RBFA Gene.

No data available for UniProtKB/Swiss-Prot for RBFA Gene

Publications for RBFA Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3
  5. Network organization of the human autophagy system. (PMID: 20562859) Behrends C. … Harper J.W. (Nature 2010) 3

Products for RBFA Gene

Sources for RBFA Gene

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