RBBP9 Gene
protein-coding GIFtS: 51
GCID: GC20M018415
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|
retinoblastoma binding protein 9(Previous name: retinoblastoma-binding protein 9 )
| |
Aliases
for RBBP9 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Retinoblastoma Binding Protein 91 2 | | B5T-Overexpressed Gene Protein2 3 | | Retinoblastoma-Binding Protein 91 2 3 | | Bog1 | | BOG2 3 5 | | B5T Overexpressed Gene Protein2 | | Retinoblastoma-Binding Protein 102 3 | | Putative Hydrolase RBBP92 | | RBBP-102 3 | | Retinoma-Binding Protein 92 | | RBBP-92 3 | | EC 3.-.-.-3 | | RBBP102 3 | | Protein BOG3 |
Export aliases for RBBP9 gene to outside databasesPrevious GC identifers: GC20M018455 GC20M018462 |
Summaries
for RBBP9 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for RBBP9:
The protein encoded by this gene is a retinoblastoma binding protein that may play a role in the regulation of cellproliferation and differentiation. Two alternatively spliced transcript variants of this gene with identical predictedprotein products have been reported, one of which is a nonsense-mediated decay candidate. (provided by RefSeq, Jul2008)
UniProtKB/Swiss-Prot: RBBP9_HUMAN, O75884Function: May play a role in the transformation process due to its capacity to confer resistance to thegrowth-inhibitory effects of TGF-beta1 through interaction with retinoblastoma and the subsequent displacement ofE2F-1
Gene Wiki entry for RBBP9
|
Genomic Views
for RBBP9 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000020.10 NC_018931.1 NT_011387.8
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the RBBP9 gene promoter:
STAT5B Nkx2-5 RORalpha2 GATA-2 AREB6 CBF-B CBF-A CP1A CBF(2)
Other transcription factors
Search SABiosciences Chromatin IP Primers for RBBP9
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RBBP9 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 20p11.2 Ensembl cytogenetic band: 20p11.23 HGNC cytogenetic band: 20p11.2RBBP9 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 20 GeneLoc Exon Structure GeneLoc location for GC20M018415: view genomic region
(about GC identifiers)
Start:
|
18,467,184 bp from pter |
End:
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18,477,887 bp from pter |
Size:
|
10,704 bases |
Orientation:
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minus strand |
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Proteins
for RBBP9 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: RBBP9_HUMAN, O75884 (See
protein sequence)Recommended Name: Putative hydrolase RBBP9 Size: 186 amino acids; 21000 Da
Subcellular location: Cytoplasm. Nucleus
Miscellaneous: Interacts with the serine hydrolase-directed activity-based probe fluorophosphonate-rhodamine(FP-rhodamine). This interaction is inhibited selectively and reversibly by emetine, a compound with cytotoxicactivity
1 PDB 3D structure from  and Proteopedia  for RBBP9:2QS9 (3D)
Secondary accessions: D3DW31 Q5JPH9 Q9H1D8Alternative splicing: 2 isoforms: O75884-1 O75884-2 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for RBBP9: NX_O75884
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_O75884
RBBP9 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_006597.2
ENSEMBL proteins: ENSP00000336866
Human Recombinant Protein Products for RBBP9:
Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view): About this table
RBBP9 for ontologies About GeneDecksing
RBBP9 Antibody Products:
Assay Products for RBBP9: |
Protein
Domains /
Families
for RBBP9 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
RBBP9 for domains About GeneDecksing
1 InterPro domain/family:Graphical View of Domain Structure for InterPro Entry O75884ProtoNet protein and cluster: O75884 UniProtKB/Swiss-Prot: RBBP9_HUMAN, O75884Similarity: Belongs to the RBBP9 family |
Function
for RBBP9 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase,
shRNA from
OriGene,
Sirion Biotech,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Sirion Biotech,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
Sirion Biotech,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Molecular Function:
UniProtKB/Swiss-Prot Summary: RBBP9_HUMAN, O75884Function: May play a role in the transformation process due to its capacity to confer resistance to thegrowth-inhibitory effects of TGF-beta1 through interaction with retinoblastoma and the subsequent displacement ofE2F-1 Genatlas biochemistry entry for RBBP9:Bog,retinoblastoma binding protein,murine Bog homolog,inhibiting TGFB1 activity by displacing E2F1 when overexpressed
Enzyme Number (IUBMB): EC 3.-.-.-1
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005515 | protein binding |
-- | -- | | GO:0016787 | hydrolase activity |
IEA | -- |
RBBP9 for ontologies About GeneDecksing
Phenotypes:
2 GenomeRNAi human phenotypes for RBBP9:
Animal Models:
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for RBBP9 (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RBBP9
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
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Synthesis Service for RBBP9 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RBBP9 |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RBBP9 |
|
Pathways & Interactions
for RBBP9 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for RBBP9
STRING Interaction
Network Preview (showing 5 interactants - click image to see 6)
5/6 Interacting proteins for RBBP9 (O758843 ENSP000003368664) via UniProtKB, MINT, STRING, and/or I2D (see all 6)About this table
Gene Ontology (GO): 1 biological process term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0042127 | regulation of cell proliferation |
IEA | -- |
RBBP9 for ontologies About GeneDecksing
|
Drugs & Compounds
for RBBP9 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for RBBP9
Search CenterWatch for drugs/clinical trials and news about RBBP9
|
Transcripts
for RBBP9 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
Sirion Biotech,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for RBBP9 gene (2 alternative transcripts): NM_006606.2 NM_153328.1 Unigene Cluster for RBBP9: Retinoblastoma binding protein 9 Hs.69330 [show with all ESTs]Unigene Representative Sequence: BC0159383 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000337227(uc002wqy.3) ENST00000493184 ENST00000491835
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for RBBP9 (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RBBP9
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: RBBP9 (NM_006606) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for RBBP9 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RBBP9 |
Additional cDNA sequence: AF237576.1 AK023897.1 AL832411.1 BC015938.1 BC020627.1 BC026880.1 8 DOTS entries: DT.100025211 DT.455056 DT.100700903 DT.100776420 DT.91801283 DT.97827217 DT.100645218 DT.91801284 24/99 AceView cDNA sequences (see all 99): AA485890 BQ643778 NM_153328 AI742928 BF057169 AI912987 AA398940 AL844476 AI913337 AI217227 BF432488 AA487794 BQ016491 AF237576 AI143270 NM_006606 AI636498 BM770165 BM756563 AL844295 AL832411 AI095746 BI670290 AI056324
GeneLoc Exon Structure
4 Alternative Splicing Database (ASD) splice patterns (SP) for RBBP9 About this scheme
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | · | 5c | · | 5d |
|---|
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| SP1: | | | | | | | | | | | | | | | | | | | | | |
| SP2: | | | | | | | - | | | | | | | | | | | | | | |
| SP3: | | | | | | | - | | - | | | | | | | | | | | | |
| SP4: | | | | | | | - | | | | - | | | | | | | | | |
ECgene alternative splicing isoforms for RBBP9
|
Expression
for RBBP9 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| RBBP9 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GACTGTCAAA
About this image
See RBBP9 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for RBBP9
SOURCE GeneReport for Unigene cluster: Hs.69330
UniProtKB/Swiss-Prot: RBBP9_HUMAN, O75884Tissue specificity: Widely expressed. Expressed at higher levels in tumor tissues than in normal tissues
SABiosciences Custom PCR Arrays for RBBP9
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for RBBP9
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat RBBP9 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RBBP9 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RBBP9 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RBBP9 |
Orthologs
for RBBP9 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of chordates.
Orthologs for RBBP9 gene from 2/10 species (see all 10) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
mouse
(Mus musculus) |
Mammalia |
Rbbp91 , 5 |
retinoblastoma binding protein 91, 5 |
92.07(n)1
91.89(a)1 |
|
2 (71.02 cM)5
264501 NM_015754.21 NP_056569.21
1445422655 |
zebrafish
(Danio rerio) |
Actinopterygii |
wufd05g112 |
Transcribed sequence with moderate similarity to protein more |
74.36(n) |
|
57091781 |
ENSEMBL Gene Tree for RBBP9 (if available)
TreeFam Gene Tree for RBBP9 (if available) |
Paralogs
for RBBP9 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| -- |
Genomic Variants
for RBBP9 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 20 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for RBBP9 (18467184 - 18477887 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for RBBP9: -- | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing RBBP9 |
|
Disorders
/ Diseases
for RBBP9 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
RBBP9 for disorders About GeneDecksing
OMIM gene information: 602908
OMIM disorders: --
7  diseases for RBBP9: About MalaCardsretinoblastoma yellow fever hydrarthrosis bagassosis
photosensitivity disease osteochondrosis pancreatitis
2 diseases from the University of Copenhagen DISEASES database for RBBP9:Hydrarthrosis Osteochondrosis Export disorders for RBBP9 gene to outside databases
|
Publications
for RBBP9 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for RBBP9 gene, integrated from 9 sources (see all 20):
(articles sorted by number of sources associating them with RBBP9) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- A retinoblastoma-binding protein that affects cell-cycle control and confers transforming ability. (PubMed id 9697699)1, 2, 3, 9 Woitach J.T.... Thorgeirsson S.S. (1998)
- Assignment of the Bog gene (RBBP9) to syntenic regions of mouse chromosome 2G1-H1 and human chromosome 20p11.2 by fluorescence in situ hybridization. (PubMed id 10449909)1, 3, 9 Woitach J.T....Thorgeirsson S.S. (1999)
- Cloning and expression of a novel retinoblastoma binding protein cDNA, RBBP10. (PubMed id 12296629)1, 2, 9 Chen J.-Z....Mao Y.-M. (2002)
- Crystal structure of human retinoblastoma binding protein 9. (PubMed id 19004028)1, 2 Vorobiev S.M.... Tong L. (2009)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- The DNA sequence and comparative analysis of human chromosome 20. (PubMed id 11780052)1, 2 Deloukas P....Rogers J. (2001)
- RBBP9: a tumor-associated serine hydrolase activity r equired for pancreatic neoplasia. (PubMed id 20080647)1, 9 Shields D.J....Cheresh D.A. (2010)
- Human retinoblastoma binding protein 9, a serine hydro lase implicated in pancreatic cancers. (PubMed id 21933118)1 Vorobiev S.M....Tong L. (2012)
- Two potential biomarkers identified in mesenchymal ste m cells and leukocytes of patients with sporadic amyotrophic lateral sclerosis. (PubMed id 22430187)1 Nachmany H....Weil M. (2012)
- Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)
|
External Searches for RBBP9 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing RBBP9 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing RBBP9 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing RBBP9 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
|
About This Section
| Patent Information for RBBP9 gene:
Search GeneIP for patents involving RBBP9
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for RBBP9 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
About This Section
|
 | |
 | |
 |
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|
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| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RBBP9 |
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