Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RBBP8NL Gene

Aliases for RBBP8NL Gene

  • RBBP8 N-Terminal Like 2 3
  • C20orf151 3 4
  • Chromosome 20 Open Reading Frame 151 2
  • Hypothetical Protein LOC140893 2
  • RBBP8 N-Terminal-Like Protein 3

External Ids for RBBP8NL Gene

Previous HGNC Symbols for RBBP8NL Gene

  • C20orf151

Previous GeneCards Identifiers for RBBP8NL Gene

  • GC20M060986

Summaries for RBBP8NL Gene

GeneCards Summary for RBBP8NL Gene

RBBP8NL (RBBP8 N-Terminal Like) is a Protein Coding gene. An important paralog of this gene is RBBP8.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RBBP8NL Gene

Genomics for RBBP8NL Gene

Genomic Location for RBBP8NL Gene

Start:
62,410,237 bp from pter
End:
62,427,573 bp from pter
Size:
17,337 bases
Orientation:
Minus strand

Genomic View for RBBP8NL Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RBBP8NL Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RBBP8NL Gene

No data available for Regulatory Elements for RBBP8NL Gene

Proteins for RBBP8NL Gene

  • Protein details for RBBP8NL Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NC74-RB8NL_HUMAN
    Recommended name:
    RBBP8 N-terminal-like protein
    Protein Accession:
    Q8NC74
    Secondary Accessions:
    • B2RP98
    • Q8N4Z9
    • Q9BR75
    • Q9H0Y9

    Protein attributes for RBBP8NL Gene

    Size:
    664 amino acids
    Molecular mass:
    71432 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RBBP8NL Gene

Proteomics data for RBBP8NL Gene at MOPED

Post-translational modifications for RBBP8NL Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RBBP8NL Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RBBP8NL Gene

Domains for RBBP8NL Gene

Protein Domains for RBBP8NL Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RBBP8NL: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RBBP8NL Gene

Function for RBBP8NL Gene

Phenotypes for RBBP8NL Gene

GenomeRNAi human phenotypes for RBBP8NL:
genes like me logo Genes that share phenotypes with RBBP8NL: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RBBP8NL Gene

Localization for RBBP8NL Gene

Gene Ontology (GO) - Cellular Components for RBBP8NL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IDA 22664934
genes like me logo Genes that share ontologies with RBBP8NL: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for RBBP8NL Gene

Pathways for RBBP8NL Gene

SuperPathways for RBBP8NL Gene

No Data Available

Interacting Proteins for RBBP8NL Gene

Gene Ontology (GO) - Biological Process for RBBP8NL Gene

None

No data available for Pathways by source for RBBP8NL Gene

Transcripts for RBBP8NL Gene

mRNA/cDNA for RBBP8NL Gene

(13) Selected AceView cDNA sequences:
(2) REFSEQ mRNAs :
(6) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RBBP8NL Gene

RBBP8 N-terminal like:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RBBP8NL Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11 ^ 12
SP1: -
SP2:
SP3:
SP4:

Relevant External Links for RBBP8NL Gene

GeneLoc Exon Structure for
RBBP8NL
ECgene alternative splicing isoforms for
RBBP8NL

Expression for RBBP8NL Gene

mRNA expression in normal human tissues for RBBP8NL Gene

mRNA differential expression in normal tissues according to GTEx for RBBP8NL Gene

This gene is overexpressed in Esophagus - Mucosa (9.1).

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for RBBP8NL Gene

SOURCE GeneReport for Unigene cluster for RBBP8NL Gene Hs.180374

genes like me logo Genes that share expressions with RBBP8NL: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for RBBP8NL Gene

Orthologs for RBBP8NL Gene

This gene was present in the common ancestor of chordates.

Orthologs for RBBP8NL Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RBBP8NL 35
  • 98.49 (n)
  • 96.98 (a)
RBBP8NL 36
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RBBP8NL 35
  • 78.09 (n)
  • 66.06 (a)
RBBP8NL 36
  • 62 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RBBP8NL 35
  • 76.91 (n)
  • 66.56 (a)
RBBP8NL 36
  • 67 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rbbp8nl 35
  • 74.64 (n)
  • 63.62 (a)
Rbbp8nl 16
Rbbp8nl 36
  • 59 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia RBBP8NL 36
  • 41 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RBBP8NL 36
  • 46 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rbbp8nl 35
  • 74.03 (n)
  • 62.08 (a)
chicken
(Gallus gallus)
Aves RBBP8NL 36
  • 33 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RBBP8NL 36
  • 37 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia MGC75903 35
zebrafish
(Danio rerio)
Actinopterygii RBBP8NL 36
  • 24 (a)
OneToOne
Species with no ortholog for RBBP8NL:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RBBP8NL Gene

ENSEMBL:
Gene Tree for RBBP8NL (if available)
TreeFam:
Gene Tree for RBBP8NL (if available)

Paralogs for RBBP8NL Gene

Paralogs for RBBP8NL Gene

Selected SIMAP similar genes for RBBP8NL Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with RBBP8NL: view

Variants for RBBP8NL Gene

Sequence variations from dbSNP and Humsavar for RBBP8NL Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
rs744533 -- 62,427,975(-) CACCT(A/G)CCTAT upstream-variant-2KB
rs744534 -- 62,427,814(-) TCCCC(A/G)CCCGG upstream-variant-2KB
rs911078 -- 62,415,019(+) AGAAG(G/T)TCAGG intron-variant
rs911079 -- 62,415,114(+) GCAGG(C/T)GGGCA intron-variant
rs1059381 -- 62,410,387(-) CCTGC(C/T)CGCCA utr-variant-3-prime

Relevant External Links for RBBP8NL Gene

HapMap Linkage Disequilibrium report
RBBP8NL

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for RBBP8NL Gene

Disorders for RBBP8NL Gene

No disorders were found for RBBP8NL Gene.

No data available for UniProtKB/Swiss-Prot for RBBP8NL Gene

Publications for RBBP8NL Gene

  1. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 2 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  5. Comparison of tear protein levels in breast cancer patients and healthy controls using a de novo proteomic approach. (PMID: 22664934) BAPhm D. … Grus F.H. (Oncol. Rep. 2012) 3

Products for RBBP8NL Gene

Sources for RBBP8NL Gene

Back to Top

Content