Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

RBBP5 Gene

protein-coding   GIFtS: 53
GCID: GC01M205055

retinoblastoma binding protein 5

(Previous name: retinoblastoma-binding protein 5 )
 Explore 6 diseases affiliated with
RBBP5 via our new
 Human Malady Compendium 
Biological research products
for RBBP5
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Retinoblastoma Binding Protein 51 2     Retinoblastoma-Binding Protein RBQ-32 3
RBQ31 2 3 5     RBBP-52 3
SWD11 2     SWD1, Set1c WD40 Repeat Protein, Homolog2
Retinoblastoma-Binding Protein 51 2     

External Ids:    HGNC: 98881   Entrez Gene: 59292   Ensembl: ENSG000001172227   OMIM: 6006975   UniProtKB: Q152913   

Export aliases for RBBP5 gene to outside databases

Previous GC identifers: GC01M202782 GC01M200517 GC01M201415 GC01M202233 GC01M201787 GC01M203321 GC01M176220


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for RBBP5:
This gene encodes a ubiquitously expressed nuclear protein which belongs to a highly conserved subfamily of WD-repeat
proteins. The encoded protein binds directly to retinoblastoma protein, which regulates cell proliferation. It
interacts preferentially with the underphosphorylated retinoblastoma protein via the E1A-binding pocket B. Three
alternatively spliced transcript variants that encode different protein isoforms have been described for this gene.
(provided by RefSeq, Jul 2010)

UniProtKB/Swiss-Prot: RBBP5_HUMAN, Q15291
Function: In embryonic stem (ES) cells, plays a crucial role in the differentiation potential, particularly along the
neural lineage, regulating gene induction and H3 'Lys-4' methylation at key developmental loci, including that
mediated by retinoic acid (By similarity). As part of the MLL1/MLL complex, involved in mono-, di- and trimethylation
at 'Lys-4' of histone H3. Histone H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional
activation

Gene Wiki entry for RBBP5


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000001.10  NC_018912.1  NT_004487.19  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the RBBP5 gene promoter:
         GR   RFX1   GR-beta   Lmo2   CUTL1   XBP-1   POU6F1 (c2)   Evi-1   NRF-2   GR-alpha   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidRBBP5 promoter sequence
   Search SABiosciences Chromatin IP Primers for RBBP5

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RBBP5


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1q32   Ensembl cytogenetic band:  1q32.1   HGNC cytogenetic band: 1q32

RBBP5 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RBBP5 gene location

GeneLoc information about chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01M205055:  view genomic region     (about GC identifiers)

Start:
205,055,270 bp from pter      End:
205,091,150 bp from pter
Size:
35,881 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: RBBP5_HUMAN, Q15291 (See protein sequence)
Recommended Name: Retinoblastoma-binding protein 5  
Size: 538 amino acids; 59153 Da
Subunit: Component of the SET1 complex, at least composed of the catalytic subunit (SETD1A or SETD1B), WDR5, WDR82,
RBBP5, ASH2L/ASH2, CXXC1/CFP1, HCFC1 and DPY30. Core component of several methyltransferase-containing complexes
including MLL1/MLL, MLL2/3 (also named ASCOM complex) and MLL4/WBP7. Each complex is at least composed of ASH2L,
RBBP5, WDR5, DPY30, one or more specific histone methyltransferases (MLL, MLL2/ALR, MLL3 and MLL4/WBP7), and the
facultative components PAGR1, BAP18, CHD8, E2F6, HCFC1, HCFC2, HSP70, INO80C, KDM6A, KANSL1, LAS1L, MAX, MCRS1, MEN1,
MGA, MYST1/MOF, NCOA6, PAXIP1/PTIP, PELP1, PHF20, PRP31, RING2, RUVB1/TIP49A, RUVB2/TIP49B, SENP3, TAF1, TAF4, TAF6,
TAF7, TAF9, TEX10 and alpha- and beta-tubulin. Interacts with WDR5 and ASH2L; the interaction is direct. Interacts
with WDR82 and SETD1A
Subcellular location: Nucleus
1 PDB 3D structure from and Proteopedia for RBBP5:
3P4F (3D)    
Secondary accessions: A8K272 Q7Z6D8 Q8NDZ7
Alternative splicing: 2 isoforms:  Q15291-1   Q15291-2   (Contains a phosphoserine at position 490)

Explore the universe of human proteins at neXtProt for RBBP5: NX_Q15291

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q15291

  • RBBP5 Protein expression data from MOPED and PaxDb:    About this image 
    RBBP5 Protein Expression
    REFSEQ proteins (3 alternative transcripts): 
    NP_001180201.1  NP_001180202.1  NP_005048.2  

    ENSEMBL proteins: 
     ENSP00000264515   ENSP00000356132  

    Human Recombinant Protein Products for RBBP5: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Browse OriGene full length recombinant human proteins expressed in human HEK293 cells
    Browse OriGene Protein Over-expression Lysates
    OriGene Custom Protein Services for RBBP5 
    GenScript Custom Purified and Recombinant Proteins Services for RBBP5
    Novus Biologicals RBBP5 Proteins
    Novus Biologicals RBBP5 Lysate
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for RBBP5

    Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IDA17500065
    GO:0035097histone methyltransferase complex IPI14992727
    GO:0048188Set1C/COMPASS complex IDA18838538
    GO:0071339MLL1 complex IDA15960975

    RBBP5 for ontologies           About GeneDecksing



    RBBP5 Antibody Products: 
    EMD Millipore Mono- and Polyclonal Antibodies for the study of RBBP5
    Browse R&D Systems for Antibodies
    Cell Signaling Technology (CST) Antibodies for RBBP5 
    Browse OriGene Antibodies
    OriGene Custom Antibody Services for RBBP5 
    GenScript Custom Superior Antibodies Services for RBBP5
    Novus Biologicals RBBP5 Antibodies
    Abcam antibodies for RBBP5 
    Uscn Antibodies for RBBP5
    ThermoFisher Antibodies for RBBP5

    Assay Products for RBBP5: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for RBBP5
    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for RBBP5


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    RBBP5 for domains           About GeneDecksing

    3 InterPro domains/families:
     IPR001680 WD40_repeat
     IPR017986 WD40_repeat_dom
     IPR015943 WD40/YVTN_repeat-like_dom

    Graphical View of Domain Structure for InterPro Entry Q15291

    ProtoNet protein and cluster: Q15291

    UniProtKB/Swiss-Prot: RBBP5_HUMAN, Q15291
    Similarity: Contains 6 WD repeats


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: RBBP5_HUMAN, Q15291
    Function: In embryonic stem (ES) cells, plays a crucial role in the differentiation potential, particularly along the
    neural lineage, regulating gene induction and H3 'Lys-4' methylation at key developmental loci, including that
    mediated by retinoic acid (By similarity). As part of the MLL1/MLL complex, involved in mono-, di- and trimethylation
    at 'Lys-4' of histone H3. Histone H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional
    activation

         Genatlas biochemistry entry for RBBP5:
    RB1 binding nuclear protein 5,with homology to TF2B

         Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding IPI19556245
    GO:0035064methylated histone residue binding IDA15960975
    GO:0042800contributes to histone methyltransferase activity (H3-K4 specific) IDA17355966
    GO:0044212transcription regulatory region DNA binding IDA16603732
         
    RBBP5 for ontologies           About GeneDecksing


    Animal Models:
       inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for RBBP5 

    miRNA
    Products:
        
    OriGene 3'-UTR Clone: RBBP5
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat RBBP5
    8/56 QIAGEN miScript miRNA Assays for microRNAs that regulate RBBP5 (see all 56):
    hsa-miR-4291 hsa-miR-513a-5p hsa-let-7a-2* hsa-miR-488 hsa-miR-766 hsa-miR-570 hsa-miR-3142 hsa-miR-629*
    SwitchGear 3'UTR luciferase reporter plasmidRBBP5 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for RBBP5 (see all 7)
    OriGene shRNA RFP: RBBP5
    OriGene siRNA: RBBP5
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RBBP5
    Sirion Biotech Custom design and validation of potent shRNA sequences against RBBP5 

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for RBBP5
    Sirion Biotech Customized adenovirus for overexpression of RBBP5 
    Sirion Biotech Customized adenovirus for potent knockdown of RBBP5

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for RBBP5 (see all 6)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RBBP5
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector (see all 3): RBBP5 (NM_005057)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for RBBP5
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RBBP5 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for RBBP5
    Search LifeMap BioReagents cell lines for RBBP5
    Sirion Biotech Customized stable knockdown cell line services for RBBP5 
    Sirion Biotech Customized inducible knockdown cell line services for RBBP5
    Sirion Biotech Customized stable overexpressing cell line services for RBBP5
    Sirion Biotech Customized inducible overexpressing cell line services for RBBP5

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RBBP5


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Chromatin Regulation / Acetylation
    Chromatin Regulation / Acetylation1.00

    Pathway sources
    See GeneCards unified pathways
    Show all pathways


    1 Cell Signaling Technology (CST) Pathway for RBBP5
        Chromatin Regulation / Acetylation



    RBBP5 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for RBBP5

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/875 Interacting proteins for RBBP5 (Q152911, 2, 3 ENSP000002645154) via UniProtKB, MINT, STRING, and/or I2D (see all 875)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    HIST1H4AP628053I2D: score=1 
    HIST1H4BP628053I2D: score=1 
    HIST1H4CP628053I2D: score=1 
    HIST1H4DP628053I2D: score=1 
    HIST1H4EP628053I2D: score=1 
    About this table

    Gene Ontology (GO): 5 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006351transcription, DNA-dependent IEA--
    GO:0006355regulation of transcription, DNA-dependent IEA--
    GO:0006974response to DNA damage stimulus IDA17500065
    GO:0043627response to estrogen stimulus IDA16603732
    GO:0051568histone H3-K4 methylation IDA17355966

    RBBP5 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for RBBP5
    Search CenterWatch for drugs/clinical trials and news about RBBP5 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for RBBP5 gene (3 alternative transcripts): 
    NM_001193272.1  NM_001193273.1  NM_005057.3  

    Unigene Cluster for RBBP5:

    Retinoblastoma binding protein 5
    Hs.519230  [show with all ESTs]
    Unigene Representative Sequence: NM_005057
    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000264515(uc010prd.2 uc010pre.2 uc001hbu.2) ENST00000367164(uc001hbv.2)
    ENST00000484379

    miRNA
    Products:
         
    OriGene 3'-UTR Clone: RBBP5
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat RBBP5
    8/56 QIAGEN miScript miRNA Assays for microRNAs that regulate RBBP5 (see all 56):
    hsa-miR-4291 hsa-miR-513a-5p hsa-let-7a-2* hsa-miR-488 hsa-miR-766 hsa-miR-570 hsa-miR-3142 hsa-miR-629*
    SwitchGear 3'UTR luciferase reporter plasmidRBBP5 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for RBBP5 (see all 7)
    OriGene shRNA RFP: RBBP5
    OriGene siRNA: RBBP5
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RBBP5
    Sirion Biotech Custom design and validation of potent shRNA sequences against RBBP5 
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for RBBP5 (see all 6)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RBBP5
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector (see all 3): RBBP5 (NM_005057)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for RBBP5
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RBBP5 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for RBBP5
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat RBBP5
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RBBP5
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RBBP5

    Additional cDNA sequence: 

    AK290137.1 AK296978.1 AK297540.1 BC037284.2 BC053856.1 BC075059.2 BC075060.2 X85134.1 

    6 DOTS entries:

    DT.100814660  DT.91793814  DT.101972968  DT.121330413  DT.99993441  DT.121330352 

    24/100 AceView cDNA sequences (see all 100):

    BM457775 AL119169 BE378702 BP871752 BP357482 CD518019 CD559083 BC075059 
    CF138358 AA488959 BC075060 BX475888 BM841893 BU430770 AA489300 BG177847 
    BX096879 BM452621 AW505316 BC053856 BU627762 BC037284 AA410788 AI056177 

    GeneLoc Exon Structure

    5/7 Alternative Splicing Database (ASD) splice patterns (SP) for RBBP5 (see all 7)    About this scheme

    ExUns: 1a · 1b ^ 2a · 2b · 2c ^ 3 ^ 4a · 4b · 4c ^ 5a · 5b · 5c ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b ^ 11 ^ 12 ^ 13a · 13b ^ 14a · 14b · 14c
    SP1:                                                                                                                                                      
    SP2:                                                                                                                                -                     
    SP3:                                                        -                                                                                             
    SP4:              -     -     -                                                                                                                           
    SP5:                                                                                                                                                      


    ECgene alternative splicing isoforms for RBBP5

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    RBBP5 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: --
    RBBP5 Expression
    About this image
    See RBBP5 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for RBBP5

    SOURCE GeneReport for Unigene cluster: Hs.519230

    UniProtKB/Swiss-Prot: RBBP5_HUMAN, Q15291
    Tissue specificity: Ubiquitously expressed

        SABiosciences Expression via Pathway-Focused PCR Arrays including RBBP5: 
              Epigenetic Chromatin Modification Enzymes in human mouse rat
              Polycomb & Trithorax Complexes in human mouse rat

    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for RBBP5
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat RBBP5
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RBBP5
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RBBP5
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RBBP5

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for RBBP5 gene from 10/35 species (see all 35)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Rbbp51 , 5 retinoblastoma binding protein 51, 5 92.63(n)1
    99.07(a)1
      1 (57.24 cM)5
    2134641  NM_172517.21  NP_766105.21 
     1324773675 
    chicken
    (Gallus gallus)
    Aves RBBP51 retinoblastoma binding protein 5 83.52(n)
    97.58(a)
      419826  NM_001030914.1  NP_001026085.1 
    lizard
    (Anolis carolinensis)
    Reptilia RBBP56
    --
    91(a)
    1 ↔ 1
    4(116301007-116330842)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.71002 Xenopus laevis transcribed sequence with strong similarity to protein spQ15291 (H.sapiens) RBB5_HUMAN Retinoblastoma-binding protein 5 (RBBP-5) (Retinoblastoma-binding protein RBQ-3) less 78.36(n)    BX847136.1 
    zebrafish
    (Danio rerio)
    Actinopterygii zgc560782 similar to retinoblastoma binding protein 5 74.28(n)   393215  BC047822.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG64343
    CG55851
    CG55851 71(a)
    (best of 2)3
    60.52(n)1
    68.53(a)1
      77B43
    402391  NM_140952.21  NP_649209.11 
    worm
    (Caenorhabditis elegans)
    Secernentea F21H12.11 , 3 Protein F21H12.11 41(a)3
    53.78(n)1
    43.84(a)1
      II(6097788-6101835)3
    1740191  NM_062821.71  NP_495222.21 
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes SWD1(YAR003W)4
    SWD11
    Subunit of the COMPASS (Set1C) complex, which methylates histone H3 on lysine 4 and is required in transcriptional silencing near telomeres; WD40 beta propeller superfamily member with similarity to mammalian Rbbp7 less4
    Swd1p1
    46.13(n)1
    33.98(a)1
      1(155005-156285)4
    8512651, 4  NP_009403.11, 4 
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons AT3G210601 transducin/WD40 domain-containing protein 51.45(n)
    42.09(a)
      821658  NM_113000.5  NP_188743.3 
    rice
    (Oryza sativa)
    Liliopsida Os03g02079001 hypothetical protein 48.73(n)
    41.77(a)
      4332006  NM_001055863.1  NP_001049328.1 


    ENSEMBL Gene Tree for RBBP5 (if available)
    TreeFam Gene Tree for RBBP5 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/686 NCBI SNPs in RBBP5 are shown (see all 686    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 1 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs57802681,2
    C,F--176229744(+) ATGAG-/TTTTTT 1 -- int13Minor allele frequency- T:0.33NA CSA 6
    rs1924949271,2
    --205054816(+) TTATCC/TTTAGG 4 -- ds5001 us2k10--------
    rs120936881,2
    C,F,H--205054829(+) ACAACG/AAGCAT 4 -- ds5001 us2k15Minor allele frequency- A:0.03NS EA WA 538
    rs121393731,2
    C,F,H--205054879(+) AGGCTA/CATAAG 4 -- ds5001 us2k110Minor allele frequency- C:0.17NS EA NA CSA WA 760
    rs1388747051,2
    --205054893(+) TCAACC/TGTACT 4 -- us2k1 ds50010--------
    rs1493856251,2
    --205054933(+) GACAGA/GAACTT 4 -- us2k1 ds50010--------
    rs1152492261,2
    --205054980(+) CCCTAC/TGGCCT 4 -- ds5001 us2k11Minor allele frequency- T:0.01WA 118
    rs115895401,2
    C,H--205054981(+) CCTACG/AGCCTC 4 -- us2k1 ds50016Minor allele frequency- A:0.00NS EA NA 524
    rs1833833021,2
    --205055061(+) GATCAA/GCAACT 4 -- us2k1 ds50010--------
    rs21979091,2
    C,F,O,A,H--205055162(+) CACACC/TGAAAG 4 -- ds5001 us2k128Minor allele frequency- T:0.22NS EA NA WA CSA 2490

    HapMap Linkage Disequilibrium report for RBBP5 (205055270 - 205091150 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 1 variation for RBBP5
         1 Indel: 58358

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing RBBP5
    DNA2.0 Custom Variant and Variant Library Synthesis for RBBP5

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    RBBP5 for disorders           About GeneDecksing

    OMIM gene information: 600697    OMIM disorders: --

    6 diseases for RBBP5:    About MalaCards
    retinoblastoma    wiskott-aldrich syndrome    intrahepatic cholangiocarcinoma    cholangiocarcinoma
    breast cancer    leukemia


    Export disorders for RBBP5 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for RBBP5 gene, integrated from 9 sources (see all 67):
    (articles sorted by number of sources associating them with RBBP5)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Molecular cloning of a human protein that binds to the retinoblastoma protein and chromosomal mapping. (PubMed id 7558034)1, 2, 3 Saijo M.... Taya Y. (1995)
    2. On the mechanism of multiple lysine methylation by th e human mixed lineage leukemia protein-1 (MLL1) core complex. (PubMed id 19556245)1, 2 Patel A....Cosgrove M.S. (2009)
    3. Wdr82 is a C-terminal domain-binding protein that recruits the Setd1A Histone H3-Lys4 methyltransferase complex to transcription start sites of transcribed human genes. (PubMed id 17998332)1, 2 Lee J.H. and Skalnik D.G. (2008)
    4. Molecular regulation of H3K4 trimethylation by Wdr82, a component of human Set1/COMPASS. (PubMed id 18838538)1, 2 Wu M....Shilatifard A. (2008)
    5. Identification and characterization of the human Set1B histone H3- Lys4 methyltransferase complex. (PubMed id 17355966)1, 2 Lee J.-H.... Skalnik D.G. (2007)
    6. PTIP Associates with MLL3- and MLL4-containing Histone H3 Lysine 4 Methyltransferase Complex. (PubMed id 17500065)1, 2 Cho Y.W.... Ge K. (2007)
    7. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)1, 2 Olsen J.V....Mann M. (2006)
    8. CpG-binding protein (CXXC finger protein 1) is a component of the mammalian Set1 histone H3-Lys4 methyltransferase complex, the analogue of the yeast Set1/COMPASS complex. (PubMed id 16253997)1, 2 Lee J.-H. and Skalnik D.G. (2005)
    9. Physical association and coordinate function of the H3 K4 methyltransferase MLL1 and the H4 K16 acetyltransferase MOF. (PubMed id 15960975)1, 2 Dou Y.... Roeder R.G. (2005)
    10. Leukemia proto-oncoprotein MLL forms a SET1-like histone methyltransferase complex with menin to regulate Hox gene expression. (PubMed id 15199122)1, 2 Yokoyama A.... Cleary M.L. (2004)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 5929 HGNC: 9888 AceView: RBBP5 Ensembl:ENSG00000117222 euGenes: HUgn5929
    ECgene: RBBP5 H-InvDB: RBBP5

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for RBBP5 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for RBBP5 Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for RBBP5 gene:
    Search GeneIP for patents involving RBBP5

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
    About This Section

     Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
     EMD Millipore Mono- and Polyclonal Antibodies for the study of RBBP5
     Browse Kits and Assays available from EMD Millipore
     Browse Purified and Recombinant Proteins at EMD Millipore
     Browse Small Molecules at EMD Millipore
     Browse for Gene Knock-down Tools from EMD Millipore
     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Browse Antibodies   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Browse Recombinant/Natural Proteins  
     Browse OriGene Antibodies   OriGene shRNA RFP for RBBP5  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for RBBP5   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for RBBP5  
     Browse OriGene Protein Over-expression Lysates   Browse OriGene Fluorogenic Cell Assay Kits  
     OriGene siRNA for RBBP5   OriGene 3'-UTR Clone for RBBP5  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RBBP5   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for RBBP5  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     Browse OriGene full length recombinant human proteins expressed in human HEK293 cells   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for RBBP5   OriGene Custom Protein Services for RBBP5  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat RBBP5
     QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing RBBP5
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RBBP5
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RBBP5
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RBBP5
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RBBP5
     GenScript Custom Purified and Recombinant Proteins Services for RBBP5 GenScript cDNA clones with any tag delivered in your preferred vector for RBBP5
     GenScript Custom Assay Services for RBBP5 GenScript Custom Superior Antibodies Services for RBBP5
     GenScript Custom overexpressing Cell Line Services for RBBP5 CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Antibodies & Assays for RBBP5 

     Regulatory tfbs in RBBP5 promoter
     Search Chromatin IP Primers for RBBP5
     RT2 qPCR Primer Assay in human, mouse, rat RBBP5
     GNC Network for RBBP5
     SABiosciences PCR Arrays including human, mouse, rat RBBP5
     Search Tocris compounds for RBBP5
     Browse Sino Biological Proteins and Antibodies
     Browse Sino Biological cDNA Clones
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     RBBP5 antibodies
     RBBP5 proteins
     RBBP5 lysates
     Antibodies for RBBP5
     See all of Abcam's Antibodies, Kits and Proteins for RBBP5
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Browse ProSpec Recombinant Proteins




     RBBP5 Proteins, Antibodies, CLIAs, and ELISAs
     Search LifeMap BioReagents cell lines for RBBP5
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RBBP5
     SwitchGear 3'UTR luciferase reporter plasmids for RBBP5
     SwitchGear Promoter luciferase reporter plasmids for RBBP5
     ThermoFisher Antibodies for RBBP5
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RBBP5
     inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for RBBP5
    Sirion Biotech Customized:
     stable knockdown cell line services for RBBP5
     inducible knockdown cell line services for RBBP5
     design and validation of potent shRNA sequences against RBBP5
     adenovirus for potent knockdown of RBBP5
     adenovirus for overexpression of RBBP5
     stable overexpressing cell line services for RBBP5
     inducible overexpressing cell line services for RBBP5
           
    GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013 , 14 May 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      RBBP5 gene at Home site.
    hostname: 356977-web1.xennexinc.com index build: 106 solr: 1.4