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Aliases for RBBP5 Gene

Aliases for RBBP5 Gene

  • Retinoblastoma Binding Protein 5 2 3
  • RBQ3 3 4 6
  • Retinoblastoma-Binding Protein RBQ-3 3 4
  • Retinoblastoma-Binding Protein 5 2 3
  • RBBP-5 3 4
  • SWD1 2 3
  • SWD1, Set1c WD40 Repeat Protein, Homolog 3
  • Set1c WD40 Repeat Protein 2
  • Homolog (S. Cerevisiae) 2

External Ids for RBBP5 Gene

Previous GeneCards Identifiers for RBBP5 Gene

  • GC01M202782
  • GC01M200517
  • GC01M201415
  • GC01M202233
  • GC01M201787
  • GC01M203321
  • GC01M176220

Summaries for RBBP5 Gene

Entrez Gene Summary for RBBP5 Gene

  • This gene encodes a ubiquitously expressed nuclear protein which belongs to a highly conserved subfamily of WD-repeat proteins. The encoded protein binds directly to retinoblastoma protein, which regulates cell proliferation. It interacts preferentially with the underphosphorylated retinoblastoma protein via the E1A-binding pocket B. Three alternatively spliced transcript variants that encode different protein isoforms have been described for this gene. [provided by RefSeq, Jul 2010]

GeneCards Summary for RBBP5 Gene

RBBP5 (Retinoblastoma Binding Protein 5) is a Protein Coding gene. Diseases associated with RBBP5 include retinoblastoma. Among its related pathways are Chromatin Regulation / Acetylation. GO annotations related to this gene include transcription regulatory region DNA binding and histone methyltransferase activity (H3-K4 specific).

UniProtKB/Swiss-Prot for RBBP5 Gene

  • In embryonic stem (ES) cells, plays a crucial role in the differentiation potential, particularly along the neural lineage, regulating gene induction and H3 Lys-4 methylation at key developmental loci, including that mediated by retinoic acid (By similarity). As part of the MLL1/MLL complex, involved in mono-, di- and trimethylation at Lys-4 of histone H3. Histone H3 Lys-4 methylation represents a specific tag for epigenetic transcriptional activation.

Gene Wiki entry for RBBP5 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RBBP5 Gene

Genomics for RBBP5 Gene

Regulatory Elements for RBBP5 Gene

Genomic Location for RBBP5 Gene

Start:
205,086,142 bp from pter
End:
205,122,022 bp from pter
Size:
35,881 bases
Orientation:
Minus strand

Genomic View for RBBP5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RBBP5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RBBP5 Gene

Proteins for RBBP5 Gene

  • Protein details for RBBP5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q15291-RBBP5_HUMAN
    Recommended name:
    Retinoblastoma-binding protein 5
    Protein Accession:
    Q15291
    Secondary Accessions:
    • A8K272
    • Q7Z6D8
    • Q8NDZ7

    Protein attributes for RBBP5 Gene

    Size:
    538 amino acids
    Molecular mass:
    59153 Da
    Quaternary structure:
    • Component of the SET1 complex, at least composed of the catalytic subunit (SETD1A or SETD1B), WDR5, WDR82, RBBP5, ASH2L/ASH2, CXXC1/CFP1, HCFC1 and DPY30. Core component of several methyltransferase-containing complexes including MLL1/MLL, MLL2/3 (also named ASCOM complex) and MLL4/WBP7. Each complex is at least composed of ASH2L, RBBP5, WDR5, DPY30, one or more specific histone methyltransferases (KMT2A/MLL1, KMT2D/MLL2, KMT2C/MLL3 and KMT2B/MLL4), and the facultative components PAGR1, BAP18, CHD8, E2F6, HCFC1, HCFC2, HSP70, INO80C, KDM6A, KANSL1, LAS1L, MAX, MCRS1, MEN1, MGA, MYST1/MOF, NCOA6, PAXIP1/PTIP, PELP1, PHF20, PRP31, RING2, RUVB1/TIP49A, RUVB2/TIP49B, SENP3, TAF1, TAF4, TAF6, TAF7, TAF9, TEX10 and alpha- and beta-tubulin. Interacts with WDR5 and ASH2L; the interaction is direct. Interacts with WDR82 and SETD1A. Part of a complex composed at least of ASCL2, C11orf30/EMSY, HCFC1, HSPA8, CCAR2, MATR3, MKI67, RBBP5, TUBB2A, WDR5 and ZNF335; this complex may have a histone H3-specific methyltransferase activity (By similarity).

    Three dimensional structures from OCA and Proteopedia for RBBP5 Gene

    Alternative splice isoforms for RBBP5 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RBBP5 Gene

Proteomics data for RBBP5 Gene at MOPED

Post-translational modifications for RBBP5 Gene

  • Ubiquitination at Lys244
  • Modification sites at PhosphoSitePlus

Other Protein References for RBBP5 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

Antibody Products

  • Cell Signaling Technology (CST) Antibodies for RBBP5 (RBBP5)

No data available for DME Specific Peptides for RBBP5 Gene

Domains for RBBP5 Gene

Gene Families for RBBP5 Gene

HGNC:
  • WDR :WD repeat domain containing

Protein Domains for RBBP5 Gene

Suggested Antigen Peptide Sequences for RBBP5 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q15291

UniProtKB/Swiss-Prot:

RBBP5_HUMAN :
  • Q15291
Similarity:
  • Contains 6 WD repeats.
genes like me logo Genes that share domains with RBBP5: view

Function for RBBP5 Gene

Molecular function for RBBP5 Gene

GENATLAS Biochemistry:
RB1 binding nuclear protein 5,with homology to TF2B
UniProtKB/Swiss-Prot Function:
In embryonic stem (ES) cells, plays a crucial role in the differentiation potential, particularly along the neural lineage, regulating gene induction and H3 Lys-4 methylation at key developmental loci, including that mediated by retinoic acid (By similarity). As part of the MLL1/MLL complex, involved in mono-, di- and trimethylation at Lys-4 of histone H3. Histone H3 Lys-4 methylation represents a specific tag for epigenetic transcriptional activation.

Gene Ontology (GO) - Molecular Function for RBBP5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 12482968
GO:0035064 methylated histone binding IDA 15960975
GO:0042800 contributes_to histone methyltransferase activity (H3-K4 specific) IDA 17355966
GO:0044212 transcription regulatory region DNA binding IDA 16603732
genes like me logo Genes that share ontologies with RBBP5: view

Animal Model Products

miRNA for RBBP5 Gene

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RBBP5

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for RBBP5 Gene

Localization for RBBP5 Gene

Subcellular locations from UniProtKB/Swiss-Prot for RBBP5 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RBBP5 Gene COMPARTMENTS Subcellular localization image for RBBP5 gene
Compartment Confidence
nucleus 5
cytosol 2
peroxisome 1

Gene Ontology (GO) - Cellular Components for RBBP5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA --
GO:0005654 nucleoplasm TAS --
GO:0005730 nucleolus IDA --
GO:0035097 histone methyltransferase complex IPI 14992727
GO:0048188 Set1C/COMPASS complex IDA 17998332
genes like me logo Genes that share ontologies with RBBP5: view

Pathways for RBBP5 Gene

genes like me logo Genes that share pathways with RBBP5: view

Pathways by source for RBBP5 Gene

1 Cell Signaling Technology pathway for RBBP5 Gene

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays
    • Polycomb & Trithorax Complexes in human,mouse,rat
    • Epigenetic Chromatin Modification Enzymes in human,mouse,rat

Gene Ontology (GO) - Biological Process for RBBP5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006325 chromatin organization TAS --
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0006974 cellular response to DNA damage stimulus IDA 17500065
GO:0043627 response to estrogen IDA 16603732
genes like me logo Genes that share ontologies with RBBP5: view

Transcripts for RBBP5 Gene

Unigene Clusters for RBBP5 Gene

Retinoblastoma binding protein 5:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RBBP5

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RBBP5 Gene

ExUns: 1a · 1b ^ 2a · 2b · 2c ^ 3 ^ 4a · 4b · 4c ^ 5a · 5b · 5c ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b ^ 11 ^ 12 ^ 13a · 13b ^ 14a · 14b · 14c
SP1:
SP2: -
SP3: -
SP4: - - -
SP5:
SP6:
SP7:

Relevant External Links for RBBP5 Gene

GeneLoc Exon Structure for
RBBP5
ECgene alternative splicing isoforms for
RBBP5

Expression for RBBP5 Gene

mRNA expression in normal human tissues for RBBP5 Gene

Protein differential expression in normal tissues for RBBP5 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (19.2), Cerebrospinal fluid (8.8), and Plasma (6.3).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for RBBP5 Gene

SOURCE GeneReport for Unigene cluster for RBBP5 Gene Hs.519230

mRNA Expression by UniProt/SwissProt for RBBP5 Gene

Q15291-RBBP5_HUMAN
Tissue specificity: Ubiquitously expressed
genes like me logo Genes that share expressions with RBBP5: view

Expression partners for RBBP5 Gene

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for RBBP5 Gene

Orthologs for RBBP5 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for RBBP5 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia RBBP5 35
  • 95.35 (n)
  • 100 (a)
RBBP5 36
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RBBP5 35
  • 95.48 (n)
  • 99.81 (a)
RBBP5 36
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rbbp5 35
  • 92.63 (n)
  • 99.07 (a)
Rbbp5 16
Rbbp5 36
  • 99 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia RBBP5 35
  • 99.01 (n)
  • 99.26 (a)
RBBP5 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rbbp5 35
  • 92.94 (n)
  • 99.26 (a)
oppossum
(Monodelphis domestica)
Mammalia RBBP5 36
  • 99 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RBBP5 36
  • 98 (a)
OneToOne
chicken
(Gallus gallus)
Aves RBBP5 35
  • 83.52 (n)
  • 97.58 (a)
RBBP5 36
  • 97 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RBBP5 36
  • 90 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rbbp5 35
  • 77.1 (n)
  • 94.51 (a)
Str.20150 35
African clawed frog
(Xenopus laevis)
Amphibia Xl.7100 35
zebrafish
(Danio rerio)
Actinopterygii rbbp5 35
  • 74.98 (n)
  • 91.49 (a)
zgc56078 35
rbbp5 36
  • 90 (a)
OneToOne
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.6886 35
fruit fly
(Drosophila melanogaster)
Insecta CG5585 37
  • 66 (a)
CG6434 37
  • 71 (a)
Rbbp5 35
  • 60.59 (n)
  • 68.53 (a)
CG6434 36
  • 61 (a)
OneToMany
Rbbp5 36
  • 67 (a)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP010575 35
  • 60.66 (n)
  • 70.6 (a)
worm
(Caenorhabditis elegans)
Secernentea F21H12.1 37
  • 41 (a)
F21H12.1 35
  • 53.55 (n)
  • 44.5 (a)
rbbp-5 36
  • 41 (a)
OneToOne
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AFL006C 35
  • 42.58 (n)
  • 34.07 (a)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0A08800g 35
  • 45.81 (n)
  • 36.36 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes SWD1 35
  • 46.23 (n)
  • 33.79 (a)
SWD1 36
  • 30 (a)
OneToOne
SWD1 38
thale cress
(Arabidopsis thaliana)
eudicotyledons AT3G21060 35
  • 51.07 (n)
  • 41.72 (a)
rice
(Oryza sativa)
Liliopsida Os03g0207900 35
  • 48.87 (n)
  • 41.56 (a)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.2695 35
bread mold
(Neurospora crassa)
Ascomycetes NCU02104 35
  • 46.98 (n)
  • 35.99 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes swd1 35
  • 50.14 (n)
  • 40.46 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.5246 36
  • 69 (a)
OneToOne
Species with no ortholog for RBBP5:
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RBBP5 Gene

ENSEMBL:
Gene Tree for RBBP5 (if available)
TreeFam:
Gene Tree for RBBP5 (if available)

Paralogs for RBBP5 Gene

No data available for Paralogs for RBBP5 Gene

Variants for RBBP5 Gene

Sequence variations from dbSNP and Humsavar for RBBP5 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs1048948 -- 205,088,596(-) CTTCC(C/T)TTTCA utr-variant-3-prime
rs1130311 -- 205,087,397(-) CCAAC(A/G)TGGTG utr-variant-3-prime
rs1339321 -- 205,121,305(-) AAGGT(C/T)CTTTG intron-variant
rs1817001 -- 205,095,312(-) GTCCT(A/G)GGCCG intron-variant
rs2029139 -- 205,097,906(-) CCCGA(A/G)ATACT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RBBP5 Gene

Variant ID Type Subtype PubMed ID
nsv819953 CNV Loss 19587683
nsv468016 CNV Loss 19166990

Relevant External Links for RBBP5 Gene

HapMap Linkage Disequilibrium report
RBBP5
Human Gene Mutation Database (HGMD)
RBBP5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RBBP5 Gene

Disorders for RBBP5 Gene

MalaCards: The human disease database

MalaCards: The human disease database.

Search for RBBP5 Gene in MalaCards »

(1) Diseases for RBBP5 Gene including...

Relevant External Links for RBBP5

Genetic Association Database (GAD)
RBBP5
genes like me logo Genes that share disorders with RBBP5: view

No data available for OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships and Genatlas for RBBP5 Gene

Publications for RBBP5 Gene

  1. Molecular cloning of a human protein that binds to the retinoblastoma protein and chromosomal mapping. (PMID: 7558034) Saijo M. … Taya Y. (Genomics 1995) 2 3 4
  2. Activating signal cointegrator 2 belongs to a novel steady-state complex that contains a subset of trithorax group proteins. (PMID: 12482968) Goo Y.-H. … Lee J.W. (Mol. Cell. Biol. 2003) 3 23
  3. Menin associates with a trithorax family histone methyltransferase complex and with the hoxc8 locus. (PMID: 14992727) Hughes C.M. … Meyerson M. (Mol. Cell 2004) 3 4
  4. Leukemia proto-oncoprotein MLL forms a SET1-like histone methyltransferase complex with menin to regulate Hox gene expression. (PMID: 15199122) Yokoyama A. … Cleary M.L. (Mol. Cell. Biol. 2004) 3 4
  5. Physical association and coordinate function of the H3 K4 methyltransferase MLL1 and the H4 K16 acetyltransferase MOF. (PMID: 15960975) Dou Y. … Roeder R.G. (Cell 2005) 3 4

Products for RBBP5 Gene

  • Addgene plasmids for RBBP5

Sources for RBBP5 Gene

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