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Aliases for RBAK-RBAKDN Gene

Aliases for RBAK-RBAKDN Gene

  • RBAK-RBAKDN Readthrough 2 3
  • RBAK-LOC389458 Readthrough 3
  • RBAK-LOC389458 3
  • RBAKDN 4

External Ids for RBAK-RBAKDN Gene

Previous GeneCards Identifiers for RBAK-RBAKDN Gene

  • GC07P005024

Summaries for RBAK-RBAKDN Gene

Entrez Gene Summary for RBAK-RBAKDN Gene

  • This locus represents naturally occurring read-through transcription between the neighboring RBAK (RB-associated KRAB zinc finger) and LOC389458 (hypothetical LOC389458) genes on chromosome 7. The read-through transcript encodes a protein that shares sequence identity with the upstream gene product but its C-terminal region is distinct due to frameshifts relative to the downstream gene. [provided by RefSeq, Mar 2011]

GeneCards Summary for RBAK-RBAKDN Gene

RBAK-RBAKDN (RBAK-RBAKDN Readthrough) is a Protein Coding gene. An important paralog of this gene is ZNF182.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RBAK-RBAKDN Gene

Genomics for RBAK-RBAKDN Gene

Genomic Location for RBAK-RBAKDN Gene

Start:
4,983,718 bp from pter
End:
5,073,223 bp from pter
Size:
89,506 bases
Orientation:
Plus strand

Genomic View for RBAK-RBAKDN Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RBAK-RBAKDN Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RBAK-RBAKDN Gene

No data available for Regulatory Elements for RBAK-RBAKDN Gene

Proteins for RBAK-RBAKDN Gene

  • Protein details for RBAK-RBAKDN Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NC62-RAKDN_HUMAN
    Recommended name:
    Putative RBAK downstream neighbor protein
    Protein Accession:
    A6NC62
    Secondary Accessions:
    • Q8N0T3

    Protein attributes for RBAK-RBAKDN Gene

    Size:
    111 amino acids
    Molecular mass:
    12297 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RBAK-RBAKDN Gene

Proteomics data for RBAK-RBAKDN Gene at MOPED

Post-translational modifications for RBAK-RBAKDN Gene

No Post-translational modifications

Other Protein References for RBAK-RBAKDN Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RBAK-RBAKDN Gene

Domains for RBAK-RBAKDN Gene

Protein Domains for RBAK-RBAKDN Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RBAK-RBAKDN: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RBAK-RBAKDN Gene

Function for RBAK-RBAKDN Gene

Gene Ontology (GO) - Molecular Function for RBAK-RBAKDN Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
genes like me logo Genes that share ontologies with RBAK-RBAKDN: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RBAK-RBAKDN Gene

Localization for RBAK-RBAKDN Gene

Gene Ontology (GO) - Cellular Components for RBAK-RBAKDN Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
genes like me logo Genes that share ontologies with RBAK-RBAKDN: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for RBAK-RBAKDN Gene

Pathways for RBAK-RBAKDN Gene

SuperPathways for RBAK-RBAKDN Gene

No Data Available

Interacting Proteins for RBAK-RBAKDN Gene

Gene Ontology (GO) - Biological Process for RBAK-RBAKDN Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006355 regulation of transcription, DNA-templated --
genes like me logo Genes that share ontologies with RBAK-RBAKDN: view

No data available for Pathways by source for RBAK-RBAKDN Gene

Transcripts for RBAK-RBAKDN Gene

mRNA/cDNA for RBAK-RBAKDN Gene

(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RBAK-RBAKDN Gene

No ASD Table

Relevant External Links for RBAK-RBAKDN Gene

GeneLoc Exon Structure for
RBAK-RBAKDN
ECgene alternative splicing isoforms for
RBAK-RBAKDN

Expression for RBAK-RBAKDN Gene

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for RBAK-RBAKDN Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for RBAK-RBAKDN Gene

Orthologs for RBAK-RBAKDN Gene

This gene was present in the common ancestor of mammals.

Orthologs for RBAK-RBAKDN Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia -- 36
  • 5 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia RBAK-RBAKDN 36
  • 31 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Zfp663 36
  • 7 (a)
ManyToMany
Species with no ortholog for RBAK-RBAKDN:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RBAK-RBAKDN Gene

ENSEMBL:
Gene Tree for RBAK-RBAKDN (if available)
TreeFam:
Gene Tree for RBAK-RBAKDN (if available)

Paralogs for RBAK-RBAKDN Gene

genes like me logo Genes that share paralogs with RBAK-RBAKDN: view

Variants for RBAK-RBAKDN Gene

Sequence variations from dbSNP and Humsavar for RBAK-RBAKDN Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs35243548 -- 5,070,026(+) TCGTA(A/G)AGACA intron-variant
rs73316646 -- 5,070,006(+) GTCTA(A/C)TTTTT intron-variant
rs150128364 -- 5,070,013(+) TTTTT(A/T)ATTTT intron-variant
rs529482569 -- 5,070,023(+) TTTTC(A/G)TAGAG intron-variant
rs555696308 -- 5,070,027(+) CGTAG(A/T)GACAG intron-variant

Relevant External Links for RBAK-RBAKDN Gene

HapMap Linkage Disequilibrium report
RBAK-RBAKDN

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for RBAK-RBAKDN Gene

Disorders for RBAK-RBAKDN Gene

No disorders were found for RBAK-RBAKDN Gene.

No data available for UniProtKB/Swiss-Prot for RBAK-RBAKDN Gene

Publications for RBAK-RBAKDN Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3
  2. Toward a complete human genome sequence. (PMID: 9847074) Sulston J.E. … Waterston R. (Genome Res. 1998) 3
  3. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier L.W. … Wilson R.K. (Nature 2003) 4

Products for RBAK-RBAKDN Gene

Sources for RBAK-RBAKDN Gene

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