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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

RASSF9 Gene

protein-coding GIFtS: 46
GCID: GC12M086198

Ras association (RalGDS/AF-6) domain family (N-terminal)...

(Previous name: peptidylglycine alpha-amidating monooxygenase COOH-terminal...)
(Previous symbol: PAMCI)

Explore 1 disease affiliated with
RASSF9 via

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
Ras Association (RalGDS/AF-6) Domain Family (N-Terminal) Member 9¹ ²		PCIP1² ³
P-CIP1¹ ² ³		PAM COOH-Terminal Interactor Protein 1² ³
PAMCI¹ ² ³		Peptidylglycine Alpha-Amidating Monooxygenase COOH-Terminal Interactor Protein-1²
Peptidylglycine Alpha-Amidating Monooxygenase COOH-Terminal Interactor¹ ³		Ras Association Domain-Containing Protein 9²

External Ids:	HGNC: 15739¹	Entrez Gene: 9182²	Ensembl: ENSG00000198774⁷	OMIM: 610383⁵	UniProtKB: O75901³

Export aliases for RASSF9 gene to outside databases

Previous GC identifers: GC12M084722 GC12M083254

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for RASSF9:

The protein encoded by this gene localizes to perinuclear endosomes. This protein associates with peptidylglycine

alpha-amidating monooxygenase, and may be involved with the trafficking of this enzyme through secretory or endosomal

pathways. (provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: RASF9_HUMAN, O75901

Function: May play a role in regulating vesicuar trafficking in cells (By similarity)

Gene Wiki entry for RASSF9

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000012.11 NC_018923.1 NT_029419.12

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the RASSF9 gene promoter:
Sox5 RREB-1 NF-E2 p45 HNF-3beta Evi-1 CREB deltaCREB c-Myb NF-E2 En-1
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: RASSF9 promoter sequence

Search SABiosciences Chromatin IP Primers for RASSF9

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RASSF9

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 12q21.31 Ensembl cytogenetic band: 12q21.31 HGNC cytogenetic band: 12q21.31

RASSF9 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RASSF9 gene location

GeneLoc information about chromosome 12 GeneLoc Exon Structure

GeneLoc location for GC12M086198: view genomic region (about GC identifiers)

Start:	86,198,331 bp from pter	End:	86,230,348 bp from pter
Size:	32,018 bases	Orientation:	minus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: RASF9_HUMAN, O75901 (See protein sequence)

Recommended Name: Ras association domain-containing protein 9

Size: 435 amino acids; 50021 Da

Subunit: Interacts with PAM (By similarity)

Subcellular location: Endosome. Note=Accumulates on perinuclear endosomes (By similarity)

Secondary accessions: B3KMQ4 Q8N5U8

Explore the universe of human proteins at neXtProt for RASSF9: NX_O75901

RASSF9 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins: NP_005438.2

ENSEMBL proteins:

ENSP00000354884

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Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005626	insoluble fraction	--	--
GO:0005768	endosome	IDA	9837933
GO:0005829	cytosol	IDA	9837933
GO:0012510	trans-Golgi network transport vesicle membrane	IDA	9837933

RASSF9 for ontologies About GeneDecksing

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(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

RASSF9 for domains About GeneDecksing

1 InterPro domain/family:

IPR000159 Ras-assoc

Graphical View of Domain Structure for InterPro Entry O75901

ProtoNet protein and cluster: O75901

1 Blocks protein family: IPB000159 RA domain

UniProtKB/Swiss-Prot: RASF9_HUMAN, O75901

Similarity: Contains 1 Ras-associating domain

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Function Summary:

UniProtKB/Swiss-Prot: RASF9_HUMAN, O75901

Function: May play a role in regulating vesicuar trafficking in cells (By similarity)

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Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005215	transporter activity	NAS	9837933
GO:0005515	protein binding	IPI	9837933

RASSF9 for ontologies About GeneDecksing

1 GenomeRNAi human phenotype for RASSF9:

Increased HPV18 LCR reporter a

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for RASSF9

STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

1 Interacting protein for RASSF9 (O75901³ ENSP00000354884⁴) via UniProtKB, MINT, STRING, and/or I2D

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
PAM	P19021³, ENSP00000306100⁴	I2D: score=3 STRING: ENSP00000306100

About this table

Gene Ontology (GO): 4 biological process terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0006605	protein targeting	NAS	9837933
GO:0007165	signal transduction	IEA	--
GO:0016197	endosomal transport	NAS	9837933
GO:0046907	intracellular transport	--	--

RASSF9 for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

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(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
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About This Section

REFSEQ mRNAs for RASSF9 gene:

NM_005447.3

Unigene Cluster for RASSF9:

Ras association (RalGDS/AF-6) domain family (N-terminal) member 9

Hs.527881 [show with all ESTs]

Unigene Representative Sequence: NM_005447

1 Ensembl transcript including schematic representation, and UCSC links where relevant:

ENST00000361228(uc001taf.1)

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Additional cDNA sequence:

AF056209.1 AK022089.1 BC031589.1

1 DOTS entry:

DT.40252789

17 AceView cDNA sequences:

BC031589 AU120984 AK022089 AA644464 AF056209 AW964266 AU146904 BI760247

BM978771 BM926495 CA311032 AL699706 NM_005447 AI591004 AA295168 AA306996

AW302435

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

RASSF9 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: TTTTAATGTT

About this image

RASSF9 expression in embryonic tissues and stem cells

Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

4 LifeMap In Vivo Development Anatomical Compartments/Cells

Tissue

Anatomical Compartment

Cell

Category (developmental path)

Limb

Zeugopod

Prechondrocytic Mesenchymal Cells

Bone, Cartilage

Adipose

Interscapular Brown Adipose Depot

Adipose

Bone

Zeugopod Epiphyseal End

Bone

Lung

Trachea

Lung

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

Stem Cell Differentiation: 1 LifeMap Cell

Name

Category

Pancreatic endoderm/endocrine precursor-like cells (A scalable, suspensi...)

See RASSF9 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for RASSF9

SOURCE GeneReport for Unigene cluster: Hs.527881

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In Situ
Assay Products:

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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of animals.

Orthologs for RASSF9 gene from 5/12 species (see all 12) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
mouse (Mus musculus)	Mammalia	Rassf9^{1 , 5}	Ras association (RalGDS/AF-6) domain family (N-terminal) more^{1, 5}	82.76(n)¹ 85.29(a)¹		10 (53.56 cM)⁵ 237504¹ NM_146240.4¹ NP_666352.1¹ 102512222⁵
chicken (Gallus gallus)	Aves	RASSF9¹	Ras association (RalGDS/AF-6) domain family (N-terminal) more	71.67(n) 68.81(a)		427872 XM_425446.3 XP_425446.3
lizard (Anolis carolinensis)	Reptilia	RASSF9⁶	--	59(a)	1 ↔ 1	5(34502273-34505283)
zebrafish (Danio rerio)	Actinopterygii	LOC100150148¹	ras association domain-containing protein 9-like	55.36(n) 46.13(a)		100150148 XM_001922320.3 XP_001922355.3
fruit fly (Drosophila melanogaster)	Insecta	CG13875⁶	--	17(a)	1 ↔ 1	3L(179923-182535)

ENSEMBL Gene Tree for RASSF9 (if available)
TreeFam Gene Tree for RASSF9 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

Paralogs for RASSF9 gene

RASSF9 for paralogs About GeneDecksing

1 Pseudogenes.org Pseudogene for RASSF9
PGOHUM00000257872

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 12 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs140098099^1,2		--	86197842(+)	`GTATGA/CAGCAC`	1	--	ds500¹		0	--	--	--	--
rs185867527^1,2		--	86197890(+)	`TCCCTA/GCCAGT`	1	--	ds500¹		0	--	--	--	--
rs73176558^1,2	C,	--	86197973(+)	`TGATAC/TGTTGT`	1	--	ds500¹		3		CSA WA NA	240
rs150289929^1,2		--	86197980(+)	`TTGTAC/TTATCA`	1	--	ds500¹		0	--	--	--	--
rs11117040^1,2	C	--	86197989(+)	`CAAGGA/TTCAAT`	1	--	ds500¹		0	--	--	--	--
rs146458771^1,2		--	86198032(+)	`CAACAC/GAGTAG`	1	--	ds500¹		0	--	--	--	--
rs140888802^1,2		--	86198118(+)	`TCTACG/TTCTTC`	1	--	ds500¹		0	--	--	--	--
rs144808523^1,2		--	86198195(+)	`CAGACA/GCTAAG`	1	--	ds500¹		0	--	--	--	--
rs189323835^1,2		--	86198247(+)	`TACAAC/TGACAA`	1	--	ds500¹		0	--	--	--	--
rs73381581^1,2	C,	--	86198279(+)	`ATAAAT/GAGTTC`	1	--	ds500¹		2		WA	120

HapMap Linkage Disequilibrium report for RASSF9 (86198331 - 86230348 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for RASSF9: --

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

RASSF9 for disorders           About GeneDecksing

OMIM gene information: 610383    OMIM disorders: --

1 disease for RASSF9:    About MalaCards

alopecia

Export disorders for RASSF9 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for RASSF9 gene integrated from 9 sources:
(articles sorted by number of sources associating them with RASSF9)

Utopia: connect your pdf to the dynamic
world of online information

P-CIP1, a novel protein that interacts with the cytosolic domain of peptidylglycine alpha-amidating monooxygenase, is associated with endosomes. (PubMed id 9837933)^{1, 2, 3, 9} Chen L.... Milgram S.L. (1998)
RASSF7 Is a Member of a New Family of RAS Association Domain-containing Proteins and Is Required for Completing Mitosis. (PubMed id 18272789)^{1, 2, 3} Sherwood V....Chalmers A.D. (2008)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)^{1, 2} Ota T.... Sugano S. (2004)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)² Gerhard D.S....Malek J. (2004)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)¹ Strausberg R.L....Marra M.A. (2002)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 9182	HGNC: 15739	AceView: PAMCI	Ensembl:ENSG00000198774	euGenes: HUgn9182
ECgene: RASSF9	H-InvDB: RASSF9

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for RASSF9	Pharmacogenomics, SNPs, Pathways

Intellectual Property for RASSF9 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for RASSF9 gene:
Search GeneIP for patents involving RASSF9

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section


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	GenScript Custom Purified and Recombinant Proteins Services for RASSF9		GenScript cDNA clones with any tag delivered in your preferred vector for RASSF9
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Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RASSF9

GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

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Category			VWF (GIFTS: 73) von Willebrand factor
GIFtS Group

The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

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Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

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RASSF9 Gene

Ras association (RalGDS/AF-6) domain family (N-terminal)...

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RASSF9 Gene

Ras association (RalGDS/AF-6) domain family (N-terminal)...

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