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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

RASSF9 Gene

protein-coding   GIFtS: 47
GCID: GC12M086198

Ras Association (RalGDS/AF-6) Domain Family (N-Terminal)...

(Previous name: peptidylglycine alpha-amidating monooxygenase COOH-terminal...)
(Previous symbol: PAMCI)
  See related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Ras Association (RalGDS/AF-6) Domain Family (N-Terminal) Member 91 2     PCIP12 3
PAMCI1 2 3     PAM COOH-Terminal Interactor Protein 12 3
Peptidylglycine Alpha-Amidating Monooxygenase COOH-Terminal Interactor1 3     Peptidylglycine Alpha-Amidating Monooxygenase COOH-Terminal Interactor
Protein-12
P-CIP12 3     Ras Association Domain-Containing Protein 92

External Ids:    HGNC: 157391   Entrez Gene: 91822   Ensembl: ENSG000001987747   OMIM: 6103835   UniProtKB: O759013   

Export aliases for RASSF9 gene to outside databases

Previous GC identifers: GC12M084722 GC12M083254


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for RASSF9 Gene:
The protein encoded by this gene localizes to perinuclear endosomes. This protein associates with peptidylglycine
alpha-amidating monooxygenase, and may be involved with the trafficking of this enzyme through secretory or
endosomal pathways. (provided by RefSeq, Jul 2008)

GeneCards Summary for RASSF9 Gene: 
RASSF9 (Ras association (RalGDS/AF-6) domain family (N-terminal) member 9) is a protein-coding gene. Diseases associated with RASSF9 include alopecia. GO annotations related to this gene include protein binding and transporter activity.

UniProtKB/Swiss-Prot: RASF9_HUMAN, O75901
Function: May play a role in regulating vesicuar trafficking in cells (By similarity)

Gene Wiki entry for RASSF9 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000012.11  NC_018923.2  NT_029419.12  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the RASSF9 gene promoter:
         Sox5   RREB-1   NF-E2 p45   HNF-3beta   Evi-1   CREB   deltaCREB   c-Myb   NF-E2   En-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidRASSF9 promoter sequence
   Search SABiosciences Chromatin IP Primers for RASSF9

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RASSF9


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 12q21.31   Ensembl cytogenetic band:  12q21.31   HGNC cytogenetic band: 12q21.31

RASSF9 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RASSF9 gene location

GeneLoc information about chromosome 12         GeneLoc Exon Structure

GeneLoc location for GC12M086198:  view genomic region     (about GC identifiers)

Start:
86,198,331 bp from pter      End:
86,230,348 bp from pter
Size:
32,018 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: RASF9_HUMAN, O75901 (See protein sequence)
Recommended Name: Ras association domain-containing protein 9  
Size: 435 amino acids; 50021 Da
Subunit: Interacts with PAM (By similarity)
Subcellular location: Endosome. Note=Accumulates on perinuclear endosomes (By similarity)
Secondary accessions: B3KMQ4 Q8N5U8

Explore the universe of human proteins at neXtProt for RASSF9: NX_O75901

Explore proteomics data for RASSF9 at MOPED 

RASSF9 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

RASSF9 Protein Expression

REFSEQ proteins: NP_005438.2  
ENSEMBL proteins: 
 ENSP00000354884  

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Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005768endosome IDA9837933
GO:0005829cytosol IDA9837933
GO:0012510trans-Golgi network transport vesicle membrane IDA9837933

RASSF9 for ontologies           About GeneDecksing



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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section
1 InterPro protein domain:
 IPR000159 Ras-assoc

Graphical View of Domain Structure for InterPro Entry O75901

ProtoNet protein and cluster: O75901

1 Blocks protein domain: IPB000159 RA domain

UniProtKB/Swiss-Prot: RASF9_HUMAN, O75901
Similarity: Contains 1 Ras-associating domain


RASSF9 for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
About This Section

Molecular Function:

     UniProtKB/Swiss-Prot Summary: RASF9_HUMAN, O75901
Function: May play a role in regulating vesicuar trafficking in cells (By similarity)

     Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005215transporter activity NAS9837933
GO:0005515protein binding IPI9837933
     
RASSF9 for ontologies           About GeneDecksing


Phenotypes:
     1 GenomeRNAi human phenotype for RASSF9:
 Increased HPV18 LCR reporter a 

Animal Models:
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Inhib. RNA
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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
About This Section




Interactions:

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RASSF9

STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

1 Interacting protein for RASSF9 (O759013 ENSP000003548844) via UniProtKB, MINT, STRING, and/or I2D
InteractantInteraction Details
GeneCardExternal ID(s)
PAMP190213, ENSP000003061004I2D: score=3 STRING: ENSP00000306100
About this table

Gene Ontology (GO): 3 biological process terms (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0006605protein targeting NAS9837933
GO:0007165signal transduction IEA--
GO:0016197endosomal transport NAS9837933

RASSF9 for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section
Browse Small Molecules at EMD Millipore
Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for RASSF9 (RASF9)

Search CenterWatch for drugs/clinical trials and news about RASSF9 / RASF9

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for RASSF9 gene: 
NM_005447.3  

Unigene Cluster for RASSF9:

Ras association (RalGDS/AF-6) domain family (N-terminal) member 9
Hs.527881  [show with all ESTs]
Unigene Representative Sequence: NM_005447
1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000361228(uc001taf.1)
miRNA
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Inhib. RNA
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Additional mRNA sequence: 

AF056209.1 AK022089.1 BC031589.1 

1 DOTS entry:

DT.40252789 

17 AceView cDNA sequences:

AK022089 AA644464 AU120984 BC031589 NM_005447 AW964266 BM926495 AI591004 
AF056209 BI760247 AL699706 BM978771 AA295168 AU146904 CA311032 AA306996 
AW302435 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

RASSF9 expression in normal human tissues (normalized intensities)      RASSF9 embryonic expression: see
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: TTTTAATGTT
RASSF9 Expression
About this image


RASSF9 expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database 
 5/11 selected tissues (see all 11) fully expand
 
 Bone (Muscoskeletal System)    fully expand to see all 2 entries
         Prechondrocytic Mesenchymal Cells Zeugopod
         Zeugopod Epiphyseal End
 
 Tooth (Integumentary System)    fully expand to see all 2 entries
         visceral organ/oral region/upper jaw   
 
 Epithelium (Respiratory System)    fully expand to see all 2 entries
         bronchial epithelial cells   
 
 Gut Tube (Gastrointestinal Tract)
         Foregut
 
 Lower Urinary Tract (Urinary System)
         visceral organ/urethra of male   

See RASSF9 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for RASSF9

SOURCE GeneReport for Unigene cluster: Hs.527881
    SABiosciences Custom PCR Arrays for RASSF9
Primer
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QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RASSF9
In Situ
Assay Products:
 

 
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of animals.

Orthologs for RASSF9 gene from 5/11 species (see all 11)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Rassf91 , 5 Ras association (RalGDS/AF-6) domain family (N-terminal) more1, 5 82.76(n)1
85.29(a)1
  10 (53.56 cM)5
2375041  NM_146240.41  NP_666352.11 
 1025122225 
chicken
(Gallus gallus)
Aves RASSF91 Ras association (RalGDS/AF-6) domain family (N-terminal) more 71.67(n)
68.81(a)
  427872  XM_425446.3  XP_425446.3 
lizard
(Anolis carolinensis)
Reptilia RASSF96
Ras association (RalGDS/AF-6) domain family (N-ter...
62(a)
1 ↔ 1
5(34470106-34509635)
zebrafish
(Danio rerio)
Actinopterygii LOC1001501481 ras association domain-containing protein 9-like 55.36(n)
46.13(a)
  100150148  XM_001922320.3  XP_001922355.3 
fruit fly
(Drosophila melanogaster)
Insecta CG138756
--
15(a)
1 ↔ 1
3L(179923-182535)


ENSEMBL Gene Tree for RASSF9 (if available)
TreeFam Gene Tree for RASSF9 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
Paralogs for RASSF9 gene

RASSF9 for paralogs           About GeneDecksing


1 Pseudogenes.org Pseudogene for RASSF9
PGOHUM00000257872


(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

10/723 SNPs in RASSF9 are shown (see all 723)    About this table     
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 12 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1400980991,2
--86197842(+) GTATGA/CAGCAC 1 -- ds50010--------
rs1858675271,2
--86197890(+) TCCCTA/GCCAGT 1 -- ds50010--------
rs731765581,2
C,F--86197973(+) TGATAC/TGTTGT 1 -- ds50013Minor allele frequency- T:0.10CSA WA NA 240
rs1502899291,2
--86197980(+) TTGTAC/TTATCA 1 -- ds50010--------
rs111170401,2
C--86197989(+) CAAGGA/TTCAAT 1 -- ds50010--------
rs1464587711,2
--86198032(+) CAACAC/GAGTAG 1 -- ds50010--------
rs1408888021,2
--86198118(+) TCTACG/TTCTTC 1 -- ds50010--------
rs1448085231,2
--86198195(+) CAGACA/GCTAAG 1 -- ds50010--------
rs1893238351,2
--86198247(+) TACAAC/TGACAA 1 -- ds50010--------
rs733815811,2
C--86198279(+) ATAAAT/GAGTTC 1 -- ds50012Minor allele frequency- G:0.11WA 120

HapMap Linkage Disequilibrium report for RASSF9 (86198331 - 86230348 bp)

Structural Variations
      Database of Genomic Variants (DGV) variations for RASSF9: --
SABiosciences Cancer Mutation PCR Assays
SeqTarget long-range PCR primers for resequencing RASSF9
DNA2.0 Custom Variant and Variant Library Synthesis for RASSF9

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section
OMIM gene information: 610383    OMIM disorders: --

2 diseases for RASSF9:    About MalaCards
alopecia    


RASSF9 for disorders           About GeneDecksing


Export disorders for RASSF9 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for RASSF9 gene integrated from 9 sources:
(articles sorted by number of sources associating them with RASSF9)
    Utopia: connect your pdf to the dynamic
world of online information

  1. P-CIP1, a novel protein that interacts with the cytosolic domain of peptidylglycine alpha-amidating monooxygenase, is associated with endosomes. (PubMed id 9837933)1, 2, 3, 9 Chen L.... Milgram S.L. (1998)
  2. RASSF7 Is a Member of a New Family of RAS Association Domain-containing Proteins and Is Required for Completing Mitosis. (PubMed id 18272789)1, 2, 3 Sherwood V....Chalmers A.D. (2008)
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
  4. Proteome-wide identification of ubiquitylation sites b y conjugation of engineered lysine-less ubiquitin. (PubMed id 22053931)1 Oshikawa K....Nakayama K.I. (2012)
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
  6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 9182 HGNC: 15739 AceView: PAMCI Ensembl:ENSG00000198774 euGenes: HUgn9182
ECgene: RASSF9 H-InvDB: RASSF9

(According to HUGE)
About This Section
  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for RASSF9 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for RASSF9 gene:
Search GeneIP for patents involving RASSF9

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
About This Section

 
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GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 3 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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