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Aliases for RASSF8-AS1 Gene

Subcategory (RNA class) for RASSF8-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RASSF8-AS1 Gene

  • RASSF8 Atnisense RNA 1 2 3 5

External Ids for RASSF8-AS1 Gene

Previous GeneCards Identifiers for RASSF8-AS1 Gene

  • GC12M026092

Summaries for RASSF8-AS1 Gene

GeneCards Summary for RASSF8-AS1 Gene

RASSF8-AS1 (RASSF8 Atnisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RASSF8-AS1 Gene

Genomics for RASSF8-AS1 Gene

Regulatory Elements for RASSF8-AS1 Gene

Enhancers for RASSF8-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F025988 0.4 ENCODE 17.4 -28.9 -28885 1.2 RASSF8-AS1 RASSF8 GC12P026008
GH12F025992 1 Ensembl ENCODE 16.7 -36.3 -36255 7.6 INSM2 KLF17 ZEB1 RFX5 GLIS2 ZNF366 SCRT2 RCOR1 FOS ZNF362 RASSF8-AS1 RASSF8 ENSG00000241846 RNU4-67P GC12P026008
GH12F026017 0.5 Ensembl ENCODE 16 -57.9 -57936 0.6 CTCF RAD21 ZBTB48 PATZ1 SMC3 PRDM10 ZNF600 ZNF654 USF2 REST RASSF8-AS1 RASSF8 GC12P026008 GC12P026077
GH12F026009 0.6 Ensembl ENCODE 15.9 -50.9 -50944 2.4 PKNOX1 KLF17 FEZF1 BMI1 ZNF366 SCRT2 ZNF391 FOS CEBPB OVOL3 RASSF8 RASSF8-AS1 GC12P026008 GC12P026077
GH12F025828 1.2 Ensembl ENCODE 15.3 +130.1 130107 3.2 TBP PKNOX1 FEZF1 RAD21 BRCA1 RFX5 SCRT2 RCOR1 FOS CEBPB RASSF8 RASSF8-AS1 ENSG00000256440 ENSG00000256686
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RASSF8-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for RASSF8-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000427941 665 3001 PKNOX1 SIN3A ZNF48 GLIS2 FOS SP3 TSHZ1 SMARCA4 GLIS1 MXD3

Genomic Location for RASSF8-AS1 Gene

Chromosome:
12
Start:
25,939,329 bp from pter
End:
25,959,765 bp from pter
Size:
20,437 bases
Orientation:
Minus strand

Genomic View for RASSF8-AS1 Gene

Genes around RASSF8-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RASSF8-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RASSF8-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RASSF8-AS1 Gene

Proteins for RASSF8-AS1 Gene

Post-translational modifications for RASSF8-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RASSF8-AS1 Gene

Domains & Families for RASSF8-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RASSF8-AS1 Gene

Function for RASSF8-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RASSF8-AS1 Gene

Localization for RASSF8-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RASSF8-AS1 Gene

Pathways & Interactions for RASSF8-AS1 Gene

SuperPathways for RASSF8-AS1 Gene

No Data Available

Interacting Proteins for RASSF8-AS1 Gene

Gene Ontology (GO) - Biological Process for RASSF8-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RASSF8-AS1 Gene

Transcripts for RASSF8-AS1 Gene

mRNA/cDNA for RASSF8-AS1 Gene

(9) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RASSF8-AS1 Gene

No ASD Table

Relevant External Links for RASSF8-AS1 Gene

GeneLoc Exon Structure for
RASSF8-AS1
ECgene alternative splicing isoforms for
RASSF8-AS1

Expression for RASSF8-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RASSF8-AS1 Gene

genes like me logo Genes that share expression patterns with RASSF8-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RASSF8-AS1 Gene

Orthologs for RASSF8-AS1 Gene

Evolution for RASSF8-AS1 Gene

ENSEMBL:
Gene Tree for RASSF8-AS1 (if available)
TreeFam:
Gene Tree for RASSF8-AS1 (if available)

No data available for Orthologs for RASSF8-AS1 Gene

Paralogs for RASSF8-AS1 Gene

No data available for Paralogs for RASSF8-AS1 Gene

Variants for RASSF8-AS1 Gene

Sequence variations from dbSNP and Humsavar for RASSF8-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1059303 -- 25,954,914(-) GGATT(A/G/T)TCAAT nc-transcript-variant
rs11048359 -- 25,956,316(+) GTGAT(C/T)TCAGG nc-transcript-variant
rs111873884 -- 25,960,526(+) CTCCC(C/G)AAACC intron-variant, upstream-variant-2KB
rs111945881 -- 25,957,124(+) GCGCC(A/C/T)GGCCA intron-variant, upstream-variant-2KB
rs112622816 -- 25,957,684(+) GGGGT(-/G)GGGGG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RASSF8-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv784n106 CNV deletion 24896259
esv26656 CNV gain+loss 19812545
esv2759886 CNV loss 17122850
nsv1069654 CNV deletion 25765185
nsv557802 CNV gain 21841781

Relevant External Links for RASSF8-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RASSF8-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RASSF8-AS1 Gene

Disorders for RASSF8-AS1 Gene

Relevant External Links for RASSF8-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RASSF8-AS1

No disorders were found for RASSF8-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RASSF8-AS1 Gene

Publications for RASSF8-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for RASSF8-AS1 Gene

Sources for RASSF8-AS1 Gene

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