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Aliases for RASSF8-AS1 Gene

Subcategory (RNA class) for RASSF8-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RASSF8-AS1 Gene

  • RASSF8 Antisense RNA 1 2 3 5

External Ids for RASSF8-AS1 Gene

Previous GeneCards Identifiers for RASSF8-AS1 Gene

  • GC12M026092

Summaries for RASSF8-AS1 Gene

GeneCards Summary for RASSF8-AS1 Gene

RASSF8-AS1 (RASSF8 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for RASSF8-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RASSF8-AS1 Gene

Genomics for RASSF8-AS1 Gene

Regulatory Elements for RASSF8-AS1 Gene

Enhancers for RASSF8-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12H026268 2.1 FANTOM5 Ensembl ENCODE dbSUPER 13.3 -312.8 -312824 8.1 MLX FEZF1 SLC30A9 ZNF143 SP3 ZNF610 GLIS1 RCOR2 NBN NR2C1 BHLHE41 ENSG00000255858 ENSG00000257009 LOC100421617 ENSG00000256226 RASSF8-AS1 C12orf71 RASSF8 ENSG00000255968 ENSG00000255750
GH12H025992 1.4 Ensembl ENCODE dbSUPER 16.7 -36.3 -36255 7.6 ZSCAN4 INSM2 KLF17 BMI1 ZEB1 RFX5 GLIS2 ZNF366 RCOR1 FOS RASSF8-AS1 RASSF8 ENSG00000241846 RNU4-67P GC12P026008
GH12H026009 1.4 Ensembl ENCODE dbSUPER 15.9 -50.9 -50944 2.4 KLF17 FEZF1 ZNF366 FOS ZNF391 CEBPB OVOL3 TSHZ1 ZEB2 ZNF398 RASSF8 RASSF8-AS1 GC12P026008 GC12P026077
GH12H026017 1.2 Ensembl ENCODE dbSUPER 16 -57.9 -57887 0.5 CTCF RAD21 ZBTB48 ZSCAN5C PATZ1 SMC3 ZNF600 PRDM10 ZNF654 USF2 RASSF8-AS1 RASSF8 GC12P026008 GC12P026077
GH12H025828 1.1 Ensembl ENCODE 15.3 +130.1 130107 3.2 GTF2F1 TBP PKNOX1 MXI1 JUN MAX BRCA1 RAD21 RFX5 ZKSCAN1 RASSF8 RASSF8-AS1 ENSG00000256440 ENSG00000256686
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RASSF8-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for RASSF8-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000049933 665 2601 TBP ATF1 ZNF76 KLF17 SIN3A RAD21 GLIS2 EGR1 ZNF143 EGR2

Genomic Locations for RASSF8-AS1 Gene

Genomic Locations for RASSF8-AS1 Gene
chr12:25,939,329-25,959,765
(GRCh38/hg38)
Size:
20,437 bases
Orientation:
Minus strand
chr12:26,092,262-26,112,698
(GRCh37/hg19)

Genomic View for RASSF8-AS1 Gene

Genes around RASSF8-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RASSF8-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RASSF8-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RASSF8-AS1 Gene

Proteins for RASSF8-AS1 Gene

Post-translational modifications for RASSF8-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RASSF8-AS1 Gene

Domains & Families for RASSF8-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RASSF8-AS1 Gene

Function for RASSF8-AS1 Gene

Phenotypes From GWAS Catalog for RASSF8-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RASSF8-AS1 Gene

Localization for RASSF8-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RASSF8-AS1 Gene

Pathways & Interactions for RASSF8-AS1 Gene

SuperPathways for RASSF8-AS1 Gene

No Data Available

Interacting Proteins for RASSF8-AS1 Gene

Gene Ontology (GO) - Biological Process for RASSF8-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RASSF8-AS1 Gene

Drugs & Compounds for RASSF8-AS1 Gene

No Compound Related Data Available

Transcripts for RASSF8-AS1 Gene

mRNA/cDNA for RASSF8-AS1 Gene

(9) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RASSF8-AS1 Gene

No ASD Table

Relevant External Links for RASSF8-AS1 Gene

GeneLoc Exon Structure for
RASSF8-AS1
ECgene alternative splicing isoforms for
RASSF8-AS1

Expression for RASSF8-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RASSF8-AS1 Gene

genes like me logo Genes that share expression patterns with RASSF8-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RASSF8-AS1 Gene

Orthologs for RASSF8-AS1 Gene

Evolution for RASSF8-AS1 Gene

ENSEMBL:
Gene Tree for RASSF8-AS1 (if available)
TreeFam:
Gene Tree for RASSF8-AS1 (if available)

No data available for Orthologs for RASSF8-AS1 Gene

Paralogs for RASSF8-AS1 Gene

No data available for Paralogs for RASSF8-AS1 Gene

Variants for RASSF8-AS1 Gene

Sequence variations from dbSNP and Humsavar for RASSF8-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000518576 -- 25,955,835(+) TTCCT(A/G)CGATC intron-variant
rs1001659844 -- 25,956,501(+) TAAGA(C/T)TGGAG intron-variant
rs1001715534 -- 25,956,722(+) GATCC(C/T)GAATC nc-transcript-variant
rs1002047510 -- 25,955,077(+) CATCT(A/G)TACTG nc-transcript-variant
rs1002297334 -- 25,960,202(+) TTAAC(C/T)ACTCA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RASSF8-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv557802 CNV gain 21841781
nsv1069654 CNV deletion 25765185
esv2759886 CNV loss 17122850
esv26656 CNV gain+loss 19812545
dgv784n106 CNV deletion 24896259

Relevant External Links for RASSF8-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RASSF8-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RASSF8-AS1 Gene

Disorders for RASSF8-AS1 Gene

Relevant External Links for RASSF8-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RASSF8-AS1

No disorders were found for RASSF8-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RASSF8-AS1 Gene

Publications for RASSF8-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for RASSF8-AS1 Gene

Sources for RASSF8-AS1 Gene

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