RASSF6 Gene
protein-coding GIFtS: 47
GCID: GC04M074437
|
|
Ras association (RalGDS/AF-6) domain family member 6
| |
Aliases
for RASSF6 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Ras Association (RalGDS/AF-6) Domain Family Member 61 2 | | Putative RAS Binding Protein2 | | Ras Association (RalGDS/AF-6) Domain Family 62 | | Ras Association Domain-Containing Protein 62 |
Export aliases for RASSF6 gene to outside databasesPrevious GC identifers: GC04M074680 GC04M074842 GC04M074907 GC04M074905 GC04M074803 GC04M070250 |
Summaries
for RASSF6 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for RASSF6:
This gene encodes a member of the Ras-association domain family (RASSF). Members of this family form the core of ahighly conserved tumor suppressor network, the Salvador-Warts-Hippo (SWH) pathway. The protein encoded by this gene isa Ras effector protein that induces apoptosis. A genomic region containing this gene has been linked to susceptibilityto viral bronchiolitis. Alternative splicing results in multiple transcript variants and protein isoforms. (providedby RefSeq, Jul 2012)
UniProtKB/Swiss-Prot: RASF6_HUMAN, Q6ZTQ3Function: Involved in the induction of apoptosis, through both caspase-dependent and caspase-independent pathways. Mayact as a Ras effector protein. May suppress the serum-induced basal levels of NF-kappa-B (By similarity)
|
Genomic Views
for RASSF6 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000004.11 NC_018915.1 NT_022778.16
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the RASSF6 gene promoter:
HFH-3 FOXI1 Nkx6-1 HTF RORalpha2
Other transcription factors
Search SABiosciences Chromatin IP Primers for RASSF6
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RASSF6 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 4q13.3 Ensembl cytogenetic band: 4q13.3 HGNC cytogenetic band: 4q21.1RASSF6 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 4 GeneLoc Exon Structure GeneLoc location for GC04M074437: view genomic region
(about GC identifiers)
Start:
|
74,437,267 bp from pter |
End:
|
74,486,348 bp from pter |
Size:
|
49,082 bases |
Orientation:
|
minus strand |
|
Proteins
for RASSF6 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: RASF6_HUMAN, Q6ZTQ3 (See
protein sequence)Recommended Name: Ras association domain-containing protein 6 Size: 369 amino acids; 43384 Da
Subunit: Interacts with MOAP1 (By similarity). Interaction with activated KRAS is still a matter of debate: interactionhas been shown in the mouse (PubMed:17404571), but not in human (PubMed:17367779). Lack of interaction with MRAS, NRASnor RRAS2 has also been reported (PubMed:17367779)
Sequence caution: Sequence=AAH58835.1; Type=Erroneous initiation; Note=Translation N-terminally extended;Sequence=CAH18138.1; Type=Erroneous termination; Positions=148; Note=Translated as Gln;
Secondary accessions: Q68DT2 Q6PDA6 Q86WG9 Q86WH0Alternative splicing: 4 isoforms: Q6ZTQ3-1 Q6ZTQ3-2 Q6ZTQ3-3 Q6ZTQ3-4 Explore the universe of human proteins at neXtProt for RASSF6: NX_Q6ZTQ3
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q6ZTQ3
RASSF6 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins (4 alternative transcripts):
NP_001257320.1 NP_001257321.1 NP_803876.1 NP_958834.1
ENSEMBL proteins: ENSP00000303877 ENSP00000340578 ENSP00000379123 ENSP00000335582
Human Recombinant Protein Products for RASSF6:
RASSF6 Antibody Products:
Assay Products for RASSF6: |
Protein
Domains /
Families
for RASSF6 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
RASSF6 for domains About GeneDecksing
2 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q6ZTQ3ProtoNet protein and cluster: Q6ZTQ3 UniProtKB/Swiss-Prot: RASF6_HUMAN, Q6ZTQ3Similarity: Contains 1 Ras-associating domainSimilarity: Contains 1 SARAH domain |
Function
for RASSF6 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase,
shRNA from
OriGene,
Sirion Biotech,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Sirion Biotech,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
Sirion Biotech,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Molecular Function:
UniProtKB/Swiss-Prot Summary: RASF6_HUMAN, Q6ZTQ3Function: Involved in the induction of apoptosis, through both caspase-dependent and caspase-independent pathways. Mayact as a Ras effector protein. May suppress the serum-induced basal levels of NF-kappa-B (By similarity) Gene Ontology (GO): 1 molecular function term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005515 | protein binding |
IPI | -- |
RASSF6 for ontologies About GeneDecksing
Animal Models:
Clone
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OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RASSF6 (see all 2)
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
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In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RASSF6 |
|
Pathways & Interactions
for RASSF6 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RASSF6
STRING Interaction
Network Preview (showing 5 interactants - click image to see more details)
5 Interacting proteins for RASSF6 (Q6ZTQ31, 3 ENSP000003405784) via UniProtKB, MINT, STRING, and/or I2DAbout this table
Gene Ontology (GO): 3 biological process terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006915 | apoptotic process |
IEA | -- | | GO:0007165 | signal transduction |
IEA | -- | | GO:0042981 | regulation of apoptotic process |
IEA | -- |
RASSF6 for ontologies About GeneDecksing
|
Drugs & Compounds
for RASSF6 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for RASSF6
Search CenterWatch for drugs/clinical trials and news about RASSF6 / RASF6
|
Transcripts
for RASSF6 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
Sirion Biotech,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for RASSF6 gene (4 alternative transcripts): NM_001270391.1 NM_001270392.1 NM_177532.4 NM_201431.2 Unigene Cluster for RASSF6: Ras association (RalGDS/AF-6) domain family member 6 Hs.529677 [show with all ESTs]Unigene Representative Sequence: NM_1775325 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000307439(uc003hhc.1 uc010iik.1) ENST00000342081(uc003hhd.1 uc010iil.1)
ENST00000395777 ENST00000335049 ENST00000512591
Clone
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OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RASSF6 (see all 2)
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
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Additional cDNA sequence: AK126346.1 AY217664.1 AY217665.1 BC058835.1 CR749283.1 6 DOTS entries: DT.109242 DT.102826639 DT.443166 DT.101972393 DT.121252212 DT.75186696 24/57 AceView cDNA sequences (see all 57): AI167789 AI016998 AY217664 AY217665 AK002032 AA921679 NM_201431 NM_177532 AA806780 BX437347 AA280132 AU137808 AA280131 CR749283 AK126346 BQ787166 N50355 AA748023 N41418 BM923326 BU930079 BU941996 BX426063 BU959014
GeneLoc Exon Structure
4 Alternative Splicing Database (ASD) splice patterns (SP) for RASSF6 About this scheme
| ExUns: | 1a | · | 1b | ^ | 2a | · | 2b | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13a | · | 13b | · | 13c |
|---|
|
| SP1: | | | | | - | | - | | - | | | | | | | | | | | | | | | | | | | | | | | | | | |
| SP2: | | | | | | | | | - | | | | | | | | | | | | | | | | | | | | | | | | | | |
| SP3: | | | | | - | | - | | | | - | | - | | | | | | | | | | | | | | | | | | | | | | |
| SP4: | | | | | | | | | - | | | | | | | | | | | | - | | | | | | | | | | | | | |
ECgene alternative splicing isoforms for RASSF6
|
Expression
for RASSF6 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| RASSF6 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: AGCCGAGATG
About this image
See RASSF6 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for RASSF6
SOURCE GeneReport for Unigene cluster: Hs.529677
UniProtKB/Swiss-Prot: RASF6_HUMAN, Q6ZTQ3Tissue specificity: Highest expression in thymus, kidney and placenta. Also detected in colon, small intestine andlung. Tends to be down-regulated in 30-60% of tumors derived from breast, colon, kidney liver, rectum, pancreas,stomach and the thyroid gland compared to the normal counterpart
SABiosciences Custom PCR Arrays for RASSF6
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for RASSF6
Browse OriGene validated miRNA SYBR primer pairs
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Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RASSF6 |
Orthologs
for RASSF6 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of animals.
Orthologs for RASSF6 gene from 4/17 species (see all 17) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
chicken
(Gallus gallus) |
Aves |
RASSF61 |
Ras association (RalGDS/AF-6) domain family member more |
65.9(n)
59.25(a) |
|
422653 XM_420607.3 XP_420607.3 |
African clawed frog
(Xenopus laevis) |
Amphibia |
MGC529382 |
hypothetical protein MGC52938 |
74.11(n) |
|
BC043762.1 |
zebrafish
(Danio rerio) |
Actinopterygii |
rassf61 |
Ras association (RalGDS/AF-6) domain family 6 |
59.09(n)
50(a) |
|
751594 NM_001045339.1 NP_001038804.1 |
fruit fly
(Drosophila melanogaster) |
Insecta |
Rassf6 |
Ras association family member |
13(a) |
1 → many |
3R(18939736-18943673) |
ENSEMBL Gene Tree for RASSF6 (if available)
TreeFam Gene Tree for RASSF6 (if available) |
Paralogs
for RASSF6 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for RASSF6 gene
- RASSF22 RASSF42
2 SIMAP similar genes for RASSF6 using alignment to 1 protein entry: RASF6_HUMAN:RASSF2 RASSF4
RASSF6 for paralogs About GeneDecksing
|
Genomic Variants
for RASSF6 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 4 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for RASSF6 (74437267 - 74486348 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 2 variations for RASSF6
2 CNVs: 6278 39376 | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing RASSF6 |
|
Disorders
/ Diseases
for RASSF6 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
RASSF6 for disorders About GeneDecksing
OMIM gene information: 612620
OMIM disorders: --
5  diseases for RASSF6: About MalaCardsbronchiolitis cystic fibrosis lung disease cystic fibrosis fibrosis
thyroiditis
Human Genome Epidemiology (HuGE) Navigator: RASSF6 (1 document)
Export disorders for RASSF6 gene to outside databases
|
Publications
for RASSF6 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for RASSF6 gene, integrated from 9 sources (see all 17):
(articles sorted by number of sources associating them with RASSF6) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- RASSF6 is a novel member of the RASSF family of tumor suppressors. (PubMed id 17404571)1, 2 Allen N.P....Clark G.J. (2007)
- Ras-association domain family protein 6 induces apoptosis via both caspase-dependent and caspase-independent pathways. (PubMed id 17367779)1, 2 Ikeda M....Hata Y. (2007)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
- The RASSF gene family members RASSF5, RASSF6 and RASSF 7 show frequent DNA methylation in neuroblastoma. (PubMed id 22695170)1 Djos A....Caren H. (2012)
- Combined RASSF1A and RASSF2A Promoter Methylation Anal ysis as Diagnostic Biomarker for Bladder Cancer. (PubMed id 22530128)1 Meng W....Lautenschlaeger T. (2012)
- KIBRA gene methylation is associated with unfavorable biological prognostic parameters in chronic lymphocytic leukemia. (PubMed id 22430796)1 Shinawi T....Latif F. (2012)
- Expression of RASSF6 in kidney and the implication of RASSF6 and the Hippo pathway in the sorbitol-induced apoptosis in renal proximal tubular epithelial cells. (PubMed id 22577168)1 Withanage K....Hata Y. (2012)
- Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (2011)
- Decreased expression of RASSF6 is a novel independent prognostic marker of a worse outcome in gastric cancer patients after curative s urgery. (PubMed id 21442347)1 Wen Y....Peng Z. (2011)
|
External Searches for RASSF6 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing RASSF6 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing RASSF6 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing RASSF6 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for RASSF6 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for RASSF6 gene:
Search GeneIP for patents involving RASSF6
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for RASSF6 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
About This Section
|
 | |
 | |
 |
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