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Aliases for RASSF5 Gene

Aliases for RASSF5 Gene

  • Ras Association Domain Family Member 5 2 3 5
  • Regulator For Cell Adhesion And Polarization Enriched In Lymphoid Tissues 2 4
  • Ras Association (RalGDS/AF-6) Domain Family Member 5 2 3
  • Novel Ras Effector 1 2 3
  • New Ras Effector 1 3 4
  • NORE1 3 4
  • RAPL 3 4
  • Regulator For Cell Adhesion And Polarization Enriched In Lymphoid Tissue 3
  • Ras Association (RalGDS/AF-6) Domain Family 5 3
  • Ras Association Domain-Containing Protein 5 3
  • Ras Effector-Like Protein 3
  • Tumor Suppressor RASSF3 3
  • Rap1-Binding Protein 3
  • NORE1A 3
  • NORE1B 3
  • RASSF3 3
  • Maxp1 3

External Ids for RASSF5 Gene

Previous GeneCards Identifiers for RASSF5 Gene

  • GC01P202391
  • GC01P203324
  • GC01P203764
  • GC01P203069
  • GC01P204747
  • GC01P206680
  • GC01P177379

Summaries for RASSF5 Gene

Entrez Gene Summary for RASSF5 Gene

  • This gene is a member of the Ras association domain family. It functions as a tumor suppressor, and is inactivated in a variety of cancers. The encoded protein localizes to centrosomes and microtubules, and associates with the GTP-activated forms of Ras, Rap1, and several other Ras-like small GTPases. The protein regulates lymphocyte adhesion and suppresses cell growth in response to activated Rap1 or Ras. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

GeneCards Summary for RASSF5 Gene

RASSF5 (Ras Association Domain Family Member 5) is a Protein Coding gene. Among its related pathways are MAPK-Erk Pathway and TCR signaling in naive CD4+ T cells. An important paralog of this gene is RASSF1.

UniProtKB/Swiss-Prot for RASSF5 Gene

  • Potential tumor suppressor. Seems to be involved in lymphocyte adhesion by linking RAP1A activation upon T-cell receptor or chemokine stimulation to integrin activation. Isoform 2 stimulates lymphocyte polarization and the patch-like distribution of ITGAL/LFA-1, resulting in an enhanced adhesion to ICAM1. Together with RAP1A may participate in regulation of microtubule growth. The association of isoform 2 with activated RAP1A is required for directional movement of endothelial cells during wound healing. May be involved in regulation of Ras apoptotic function. The RASSF5-STK4/MST1 complex may mediate HRAS and KRAS induced apoptosis.

Gene Wiki entry for RASSF5 Gene

Additional gene information for RASSF5 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RASSF5 Gene

Genomics for RASSF5 Gene

Regulatory Elements for RASSF5 Gene

Enhancers for RASSF5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H206573 2 FANTOM5 Ensembl ENCODE dbSUPER 47 +71.2 71232 11 HDGF PKNOX1 ATF1 ARNT ZNF2 YY1 ZNF766 GATA2 ELK1 ZNF207 RASSF5 EIF2D MAPKAPK2 IKBKE ELK4 C1orf147 DYRK3 IL19 FCMR PIR41610
GH01H206586 1.7 FANTOM5 Ensembl ENCODE dbSUPER 26.5 +81.7 81747 6 CTCF ATF1 ARNT JUN RAD21 FOSL1 ZNF664 CC2D1A CTBP1 POLR2A RASSF5 EIF2D MAPKAPK2 C1orf147 IKBKE PIR41610 ENSG00000279946
GH01H206510 1.8 FANTOM5 Ensembl ENCODE dbSUPER 18.3 +5.5 5538 4 HDAC1 TBP PKNOX1 BRCA1 RFX5 YY1 ZNF766 ELK1 RCOR1 FOS ENSG00000261000 IKBKE RASSF5 ELK4 EIF2D MAPKAPK2 RPL7AP20
GH01H206554 1.6 Ensembl ENCODE dbSUPER 18 +55.4 55379 16 HDGF PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A ZNF766 ZNF143 FOS EIF2D RASSF5 ELK4 C1orf147 IKBKE MAPKAPK2 ENSG00000279946 PIR41610
GH01H206684 1.7 FANTOM5 ENCODE dbSUPER 14.6 +179.0 178953 4 HDGF PKNOX1 ATF1 ARID4B SIN3A BRCA1 ZNF766 GLIS2 ELK1 ZNF207 RASSF5 MAPKAPK2 DYRK3 FCMR IKBKE GC01M206696
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RASSF5 on UCSC Golden Path with GeneCards custom track

Promoters for RASSF5 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000018986 70 1201 TBP HDGF PKNOX1 RB1 RAD21 YY1 EGR1 CREM IKZF2 SMARCA5

Genomic Location for RASSF5 Gene

Chromosome:
1
Start:
206,507,530 bp from pter
End:
206,589,448 bp from pter
Size:
81,919 bases
Orientation:
Plus strand

Genomic View for RASSF5 Gene

Genes around RASSF5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RASSF5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RASSF5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RASSF5 Gene

Proteins for RASSF5 Gene

  • Protein details for RASSF5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8WWW0-RASF5_HUMAN
    Recommended name:
    Ras association domain-containing protein 5
    Protein Accession:
    Q8WWW0
    Secondary Accessions:
    • A8K1E6
    • Q5SY32
    • Q8WWV9
    • Q8WXF4
    • Q9BT99

    Protein attributes for RASSF5 Gene

    Size:
    418 amino acids
    Molecular mass:
    47090 Da
    Quaternary structure:
    • Interacts directly with activated HRAS; a RASSF5-STK4/MST1 complex probably associates with activated HRAS. Interacts with KRAS. Probably interacts with Ras-like GTPases RRAS, RRAS2, MRAS, RAP1B, RAP2A and RALA. Can self-associate. Interacts with RSSF1 isoform A. The RSSF1 isoform A-RSSF5 heterodimer probably mediates the association of RSSF1 with HRAS (By similarity). Isoform 2 interacts with activated RAP1A and ITGAL/LFA-1. Binds STK4/MST1, inhibiting STK4/MST1 autoactivation.
    SequenceCaution:
    • Sequence=AAH04270.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAH04270.1; Type=Miscellaneous discrepancy; Note=Aberrant splicing.; Evidence={ECO:0000305}; Sequence=AAH07203.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAH07203.1; Type=Miscellaneous discrepancy; Note=Aberrant splicing.; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for RASSF5 Gene

    Alternative splice isoforms for RASSF5 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RASSF5 Gene

Post-translational modifications for RASSF5 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RASSF5 Gene

No data available for DME Specific Peptides for RASSF5 Gene

Domains & Families for RASSF5 Gene

Gene Families for RASSF5 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for RASSF5 Gene

Suggested Antigen Peptide Sequences for RASSF5 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RASSF5: view

No data available for UniProtKB/Swiss-Prot for RASSF5 Gene

Function for RASSF5 Gene

Molecular function for RASSF5 Gene

UniProtKB/Swiss-Prot Function:
Potential tumor suppressor. Seems to be involved in lymphocyte adhesion by linking RAP1A activation upon T-cell receptor or chemokine stimulation to integrin activation. Isoform 2 stimulates lymphocyte polarization and the patch-like distribution of ITGAL/LFA-1, resulting in an enhanced adhesion to ICAM1. Together with RAP1A may participate in regulation of microtubule growth. The association of isoform 2 with activated RAP1A is required for directional movement of endothelial cells during wound healing. May be involved in regulation of Ras apoptotic function. The RASSF5-STK4/MST1 complex may mediate HRAS and KRAS induced apoptosis.

Phenotypes From GWAS Catalog for RASSF5 Gene

Gene Ontology (GO) - Molecular Function for RASSF5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 9488663
GO:0017016 Ras GTPase binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with RASSF5: view
genes like me logo Genes that share phenotypes with RASSF5: view

Animal Models for RASSF5 Gene

MGI Knock Outs for RASSF5:

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for RASSF5
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for RASSF5 Gene

Localization for RASSF5 Gene

Subcellular locations from UniProtKB/Swiss-Prot for RASSF5 Gene

Cytoplasm. Cytoplasm, cytoskeleton. Note=Isoform 2 is mainly located in the perinuclear region of unstimulated primary T-cells. Upon stimulation translocates to the leading edge and colocalizes with ITGAL/LFA-1 in the peripheral zone of the immunological synapse. Isoform 2 is localized to growing microtubules in vascular endothelial cells and is dissociated from microtubules by activated RAP1A.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RASSF5 gene
Compartment Confidence
cytoskeleton 5
nucleus 4
plasma membrane 2
cytosol 2
mitochondrion 1

Gene Ontology (GO) - Cellular Components for RASSF5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005634 nucleus IEA --
GO:0005737 cytoplasm IEA --
GO:0005856 cytoskeleton IEA --
GO:0005874 microtubule IEA --
genes like me logo Genes that share ontologies with RASSF5: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for RASSF5 Gene

Pathways & Interactions for RASSF5 Gene

genes like me logo Genes that share pathways with RASSF5: view

Pathways by source for RASSF5 Gene

Gene Ontology (GO) - Biological Process for RASSF5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006915 apoptotic process IEA --
GO:0007165 signal transduction IEA --
GO:0008285 negative regulation of cell proliferation IEA --
GO:0031398 positive regulation of protein ubiquitination IEA --
GO:0035556 intracellular signal transduction IEA --
genes like me logo Genes that share ontologies with RASSF5: view

No data available for SIGNOR curated interactions for RASSF5 Gene

Drugs & Compounds for RASSF5 Gene

(1) Drugs for RASSF5 Gene - From: ApexBio

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Salirasib Investigational Pharma Inhibitor of active Ras protein 0

(3) Additional Compounds for RASSF5 Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
Diglycerides Group A
  • 1,2-Dimyristoyl-rac-glycerol
  • DAG(14:0/14:0)
  • DAG(28:0)
  • DG(14:0/14:0)
  • DG(28:0)
Diglycerides Group B
  • 1-Palmitoleoyl-2-arachidonyl-sn-glycerol
  • DAG(16:1/20:0)
  • DAG(16:1n7/20:0)
  • DAG(16:1w7/20:0)
  • DAG(36:1)
Diglycerides Group D
  • 1,2-Didocosahexaenoyl-rac-glycerol
  • DAG(22:6/22:6)
  • DAG(22:6n3/22:6n3)
  • DAG(22:6w3/22:6w3)
  • DAG(44:12)

(1) ApexBio Compounds for RASSF5 Gene

Compound Action Cas Number
Salirasib Inhibitor of active Ras protein 162520-00-5
genes like me logo Genes that share compounds with RASSF5: view

Drug Products

Transcripts for RASSF5 Gene

Unigene Clusters for RASSF5 Gene

Ras association (RalGDS/AF-6) domain family member 5:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for RASSF5
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RASSF5 Gene

No ASD Table

Relevant External Links for RASSF5 Gene

GeneLoc Exon Structure for
RASSF5
ECgene alternative splicing isoforms for
RASSF5

Expression for RASSF5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RASSF5 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for RASSF5 Gene

This gene is overexpressed in Whole Blood (x13.3).

Protein differential expression in normal tissues from HIPED for RASSF5 Gene

This gene is overexpressed in Lymph node (12.9), Tlymphocyte (9.3), Monocytes (9.1), Bone marrow stromal cell (8.1), and CD8 Tcells (7.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for RASSF5 Gene



Protein tissue co-expression partners for RASSF5 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of RASSF5 Gene:

RASSF5

SOURCE GeneReport for Unigene cluster for RASSF5 Gene:

Hs.497579

mRNA Expression by UniProt/SwissProt for RASSF5 Gene:

Q8WWW0-RASF5_HUMAN
Tissue specificity: Widely expressed. Frequently down-regulated in lung tumor cell lines and primary lung tumors.

Evidence on tissue expression from TISSUES for RASSF5 Gene

  • Lymph node(4.4)
  • Nervous system(4.4)
  • Skin(4.2)
  • Blood(2.4)
  • Spleen(2.3)
  • Lung(2.2)
genes like me logo Genes that share expression patterns with RASSF5: view

Primer Products

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for RASSF5 Gene

Orthologs for RASSF5 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RASSF5 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia RASSF5 33
  • 87.96 (n)
rat
(Rattus norvegicus)
Mammalia Rassf5 33
  • 86.28 (n)
mouse
(Mus musculus)
Mammalia Rassf5 33 16
  • 84.99 (n)
zebrafish
(Danio rerio)
Actinopterygii LOC100150414 33
  • 62.25 (n)
wufj66h02 33
Species where no ortholog for RASSF5 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RASSF5 Gene

ENSEMBL:
Gene Tree for RASSF5 (if available)
TreeFam:
Gene Tree for RASSF5 (if available)

Paralogs for RASSF5 Gene

Paralogs for RASSF5 Gene

(3) SIMAP similar genes for RASSF5 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with RASSF5: view

Variants for RASSF5 Gene

Sequence variations from dbSNP and Humsavar for RASSF5 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000062517 -- 206,534,424(+) TCTCC(C/T)GGAGA intron-variant
rs1000085991 -- 206,577,586(+) ACACA(C/T)ACTTG intron-variant
rs1000090108 -- 206,534,112(+) CACCT(G/T)GTTCA intron-variant
rs1000146813 -- 206,576,059(+) CAAGC(A/G)GGGTG intron-variant
rs1000184971 -- 206,570,988(+) TCTGT(A/T)TAATT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RASSF5 Gene

Variant ID Type Subtype PubMed ID
dgv138e212 CNV loss 25503493
esv2672106 CNV deletion 23128226
nsv160541 CNV deletion 16902084
nsv946614 CNV duplication 23825009

Variation tolerance for RASSF5 Gene

Residual Variation Intolerance Score: 62.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.42; 54.54% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RASSF5 Gene

Human Gene Mutation Database (HGMD)
RASSF5
SNPedia medical, phenotypic, and genealogical associations of SNPs for
RASSF5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RASSF5 Gene

Disorders for RASSF5 Gene

Relevant External Links for RASSF5

Genetic Association Database (GAD)
RASSF5
Human Genome Epidemiology (HuGE) Navigator
RASSF5
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RASSF5

No disorders were found for RASSF5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RASSF5 Gene

Publications for RASSF5 Gene

  1. RASSF3 and NORE1: identification and cloning of two human homologues of the putative tumor suppressor gene RASSF1. (PMID: 11965544) Tommasi S … Pfeifer GP (Oncogene 2002) 2 3 4 22 60
  2. Regulation of the MST1 kinase by autophosphorylation, by the growth inhibitory proteins, RASSF1 and NORE1, and by Ras. (PMID: 15109305) Praskova M … Avruch J (The Biochemical journal 2004) 3 4 22 60
  3. Structural basis for autoactivation of human Mst2 kinase and its regulation by RASSF5. (PMID: 23972470) Ni L … Luo X (Structure (London, England : 1993) 2013) 2 3 60
  4. Centrosome-related genes, genetic variation, and risk of breast cancer. (PMID: 20508983) Olson JE … Couch FJ (Breast cancer research and treatment 2011) 3 45 60
  5. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 45 60

Products for RASSF5 Gene

Sources for RASSF5 Gene

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