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Aliases for RASSF4 Gene

Aliases for RASSF4 Gene

  • Ras Association Domain Family Member 4 2 3 5
  • Ras Association (RalGDS/AF-6) Domain Family Member 4 2 3
  • Ras Association (RalGDS/AF-6) Domain Family 4 3
  • Ras Association Domain-Containing Protein 4 3
  • Ras Association Domain Family 4 3
  • Tumor Suppressor RASSF4 3
  • AD037 3

External Ids for RASSF4 Gene

Previous GeneCards Identifiers for RASSF4 Gene

  • GC10P045230
  • GC10P044739
  • GC10P044775
  • GC10P045454
  • GC10P041979

Summaries for RASSF4 Gene

Entrez Gene Summary for RASSF4 Gene

  • The function of this gene has not yet been determined but may involve a role in tumor suppression. Alternative splicing of this gene results in several transcript variants; however, most of the variants have not been fully described. [provided by RefSeq, Jul 2008]

GeneCards Summary for RASSF4 Gene

RASSF4 (Ras Association Domain Family Member 4) is a Protein Coding gene. Among its related pathways are Hippo signaling pathway -multiple species. An important paralog of this gene is RASSF2.

UniProtKB/Swiss-Prot for RASSF4 Gene

  • Potential tumor suppressor. May act as a KRAS effector protein. May promote apoptosis and cell cycle arrest.

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RASSF4 Gene

Genomics for RASSF4 Gene

Regulatory Elements for RASSF4 Gene

Enhancers for RASSF4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G044971 2.1 FANTOM5 Ensembl ENCODE dbSUPER 17.5 +20.4 20436 16.9 MLX CREB3L1 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC C10orf25 ZNF22 TMEM72-AS1 RASSF4 FAM21FP ENSG00000223462 ENSG00000234504 TMEM72 CEP164P1 C10orf10
GH10G044957 1.7 FANTOM5 ENCODE dbSUPER 8.8 +4.4 4410 12.3 HDGF FOXA2 PKNOX1 MLX CREB3L1 SIN3A ARID4B DMAP1 YBX1 ZNF2 TMEM72-AS1 ZNF22 AGAP4 C10orf25 ENSG00000223462 ENSG00000234504 TMEM72 RASSF4 CEP164P1 ALOX5
GH10G044932 1.1 Ensembl ENCODE 11.8 -26.5 -26531 0.6 RB1 ARID4B ZNF48 RAD21 GLIS2 ZNF143 CREM ZNF263 ZNF654 REST TMEM72-AS1 RASSF4 C10orf25 ZNF22 ENSG00000223462 ENSG00000234504
GH10G044927 0.9 FANTOM5 ENCODE 11.5 -31.9 -31867 1.0 BCOR GATAD2A CEBPB CEBPG HMG20A ZNF644 THRB JUND CEBPA HNF4A RASSF4 TMEM72-AS1 ZNF22 C10orf25 TMEM72 ALOX5 ENSG00000223462 ENSG00000234504
GH10G044945 1.4 FANTOM5 Ensembl ENCODE 7.1 -11.1 -11085 5.2 PKNOX1 AGO1 ZNF133 RAD21 RARA RELB IKZF2 CREM ZNF263 GATAD2B TMEM72 C10orf25 ZNF22 RASSF4 ENSG00000227683 TMEM72-AS1 RSU1P2 ALOX5 ENSG00000223462
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RASSF4 on UCSC Golden Path with GeneCards custom track

Promoters for RASSF4 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000027447 593 2401 PKNOX1 ATF1 ARID4B SIN3A DMAP1 ZNF2 ZNF48 YY1 TCF12 GLIS2

Genomic Location for RASSF4 Gene

Chromosome:
10
Start:
44,959,407 bp from pter
End:
44,995,891 bp from pter
Size:
36,485 bases
Orientation:
Plus strand

Genomic View for RASSF4 Gene

Genes around RASSF4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RASSF4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RASSF4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RASSF4 Gene

Proteins for RASSF4 Gene

  • Protein details for RASSF4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H2L5-RASF4_HUMAN
    Recommended name:
    Ras association domain-containing protein 4
    Protein Accession:
    Q9H2L5
    Secondary Accessions:
    • Q86WH5
    • Q86WH6
    • Q86WH7
    • Q8N5A9
    • Q8TCK6

    Protein attributes for RASSF4 Gene

    Size:
    321 amino acids
    Molecular mass:
    36748 Da
    Quaternary structure:
    • Interacts directly with activated KRAS in a GTP-dependent manner.

    Alternative splice isoforms for RASSF4 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RASSF4 Gene

Post-translational modifications for RASSF4 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for RASSF4 Gene

Domains & Families for RASSF4 Gene

Gene Families for RASSF4 Gene

Protein Domains for RASSF4 Gene

Suggested Antigen Peptide Sequences for RASSF4 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RASSF4: view

No data available for UniProtKB/Swiss-Prot for RASSF4 Gene

Function for RASSF4 Gene

Molecular function for RASSF4 Gene

UniProtKB/Swiss-Prot Function:
Potential tumor suppressor. May act as a KRAS effector protein. May promote apoptosis and cell cycle arrest.

Gene Ontology (GO) - Molecular Function for RASSF4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 20562859
genes like me logo Genes that share ontologies with RASSF4: view
genes like me logo Genes that share phenotypes with RASSF4: view

Animal Model Products

  • Taconic Biosciences Mouse Models for RASSF4

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RASSF4 Gene

Localization for RASSF4 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RASSF4 gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for RASSF4 Gene

Pathways & Interactions for RASSF4 Gene

genes like me logo Genes that share pathways with RASSF4: view

Pathways by source for RASSF4 Gene

1 KEGG pathway for RASSF4 Gene

Gene Ontology (GO) - Biological Process for RASSF4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007049 cell cycle IEA --
GO:0007165 signal transduction IEA --
genes like me logo Genes that share ontologies with RASSF4: view

No data available for SIGNOR curated interactions for RASSF4 Gene

Drugs & Compounds for RASSF4 Gene

(1) Drugs for RASSF4 Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Guanosine triphosphate Experimental Pharma 0
genes like me logo Genes that share compounds with RASSF4: view

Transcripts for RASSF4 Gene

Unigene Clusters for RASSF4 Gene

Ras association (RalGDS/AF-6) domain family member 4:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RASSF4 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b · 6c ^ 7a · 7b · 7c · 7d · 7e ^ 8a · 8b · 8c ^ 9 ^ 10a · 10b ^ 11a · 11b ^ 12a · 12b ·
SP1: - - - - - - - - - - - -
SP2: - - - - - - - - - - - -
SP3: - - - - - - - - - - - - -
SP4: - - - - - - - - - -
SP5: - - - - - - - -
SP6: - - - - - - - - -
SP7: - - - - - - - -
SP8: - - - - - - - -
SP9: - - -
SP10: - - - - - - - - - -
SP11: - - - - - -
SP12: - - - - - - - - -
SP13: - -
SP14: - - - -
SP15:
SP16: - -
SP17: -
SP18: - - -
SP19:

ExUns: 12c ^ 13a · 13b · 13c ^ 14a · 14b · 14c · 14d ^ 15a · 15b
SP1: - -
SP2: - -
SP3: - -
SP4: - -
SP5: - -
SP6:
SP7:
SP8:
SP9: - -
SP10:
SP11:
SP12:
SP13:
SP14:
SP15: - -
SP16: -
SP17:
SP18: -
SP19: -

Relevant External Links for RASSF4 Gene

GeneLoc Exon Structure for
RASSF4
ECgene alternative splicing isoforms for
RASSF4

Expression for RASSF4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RASSF4 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for RASSF4 Gene

This gene is overexpressed in Kidney - Cortex (x4.4).

Protein differential expression in normal tissues from HIPED for RASSF4 Gene

This gene is overexpressed in Fetal Brain (35.3), Spleen (18.7), and NK cells (12.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for RASSF4 Gene



Protein tissue co-expression partners for RASSF4 Gene

NURSA nuclear receptor signaling pathways regulating expression of RASSF4 Gene:

RASSF4

SOURCE GeneReport for Unigene cluster for RASSF4 Gene:

Hs.522895

mRNA Expression by UniProt/SwissProt for RASSF4 Gene:

Q9H2L5-RASF4_HUMAN
Tissue specificity: Widely expressed. Frequently down-regulated in tumor cell lines.

Evidence on tissue expression from TISSUES for RASSF4 Gene

  • Lymph node(4.3)
  • Adrenal gland(4.2)
  • Skin(4.1)
  • Nervous system(3.8)
genes like me logo Genes that share expression patterns with RASSF4: view

Primer Products

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for RASSF4 Gene

Orthologs for RASSF4 Gene

This gene was present in the common ancestor of animals.

Orthologs for RASSF4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RASSF4 34 35
  • 98.96 (n)
dog
(Canis familiaris)
Mammalia RASSF4 34 35
  • 87.12 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 86 (a)
OneToMany
-- 35
  • 59 (a)
OneToMany
cow
(Bos Taurus)
Mammalia RASSF4 34 35
  • 83.77 (n)
mouse
(Mus musculus)
Mammalia Rassf4 34 16 35
  • 82.97 (n)
rat
(Rattus norvegicus)
Mammalia Rassf4 34
  • 82.87 (n)
oppossum
(Monodelphis domestica)
Mammalia RASSF4 35
  • 74 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rassf4 34
  • 63.38 (n)
zebrafish
(Danio rerio)
Actinopterygii rassf4 35
  • 61 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP000149 34
  • 56.12 (n)
fruit fly
(Drosophila melanogaster)
Insecta Rassf 34 35
  • 51.53 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 20 (a)
OneToMany
Species where no ortholog for RASSF4 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RASSF4 Gene

ENSEMBL:
Gene Tree for RASSF4 (if available)
TreeFam:
Gene Tree for RASSF4 (if available)

Paralogs for RASSF4 Gene

Paralogs for RASSF4 Gene

(2) SIMAP similar genes for RASSF4 Gene using alignment to 6 proteins:

genes like me logo Genes that share paralogs with RASSF4: view

Variants for RASSF4 Gene

Sequence variations from dbSNP and Humsavar for RASSF4 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000016528 -- 44,994,275(+) CTGAA(A/C)AATTT intron-variant, nc-transcript-variant, utr-variant-3-prime
rs1000182403 -- 44,961,170(+) TCTAG(C/G)CATAA intron-variant, upstream-variant-2KB
rs1000297914 -- 44,991,335(+) AGTCT(A/T)TTCCT intron-variant
rs1000366651 -- 44,967,380(+) AGGGC(C/T)GGGGT intron-variant
rs1000557444 -- 44,994,569(+) AAATG(C/T)CACAG intron-variant, nc-transcript-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for RASSF4 Gene

Variant ID Type Subtype PubMed ID
esv3576560 CNV gain 25503493
esv3578790 CNV loss 25503493
esv3623077 CNV loss 21293372
esv3623079 CNV loss 21293372
esv3623080 CNV gain 21293372
nsv1035235 CNV loss 25217958
nsv526734 CNV loss 19592680
nsv831845 CNV gain 17160897
nsv831846 CNV loss 17160897

Variation tolerance for RASSF4 Gene

Residual Variation Intolerance Score: 99.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.59; 78.06% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RASSF4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RASSF4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RASSF4 Gene

Disorders for RASSF4 Gene

Relevant External Links for RASSF4

Genetic Association Database (GAD)
RASSF4
Human Genome Epidemiology (HuGE) Navigator
RASSF4
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RASSF4

No disorders were found for RASSF4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RASSF4 Gene

Publications for RASSF4 Gene

  1. Association studies of 23 positional/functional candidate genes on chromosome 10 in late-onset Alzheimer's disease. (PMID: 17373700) Morgan A.R. … Williams J. (Am. J. Med. Genet. B Neuropsychiatr. Genet. 2007) 3 46 64
  2. A scan of chromosome 10 identifies a novel locus showing strong association with late-onset Alzheimer disease. (PMID: 16385451) Grupe A. … Goate A. (Am. J. Hum. Genet. 2006) 3 46 64
  3. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P. … Rogers J. (Nature 2004) 3 4 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  5. RASSF4/AD037 is a potential ras effector/tumor suppressor of the RASSF family. (PMID: 15574778) Eckfeld K. … Clark G.J. (Cancer Res. 2004) 3 4 64

Products for RASSF4 Gene

Sources for RASSF4 Gene

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