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RASSF10 Gene

protein-coding   GIFtS: 37
GCID: GC11P012990

Ras Association (RalGDS/AF-6) Domain Family (N-Terminal)...

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Ras Association (RalGDS/AF-6) Domain Family (N-Terminal) Member 101 2
Peptidylglycine Alpha-Amidating Monooxygenase COOH-Terminal
Interactor-Like1
Ras Association Domain-Containing Protein 102

External Ids:    HGNC: 339841   Entrez Gene: 6449432   Ensembl: ENSG000001894317   OMIM: 6147135   UniProtKB: A6NK893   

Export aliases for RASSF10 gene to outside databases

Previous GC identifer: GC11P012710


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for RASSF10 Gene:
RASSF10 (Ras association (RalGDS/AF-6) domain family (N-terminal) member 10) is a protein-coding gene. Diseases associated with RASSF10 include astrocytoma, and thyroid cancer.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000011.10  NC_018922.2  NT_009237.19  
Regulatory elements:
   Regulatory transcription factor binding sites in the RASSF10 gene promoter:
         Spz1   POU3F1   CUTL1   RelA   S8   c-Rel   POU2F1   POU2F1a   HSF2   Pax-4a   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for RASSF10

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat RASSF10


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11p15.2   Ensembl cytogenetic band:  11p15.2   HGNC cytogenetic band: 11p15.2

RASSF10 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RASSF10 gene location

GeneLoc information about chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11P012990:  view genomic region     (about GC identifiers)

Start:
13,030,696 bp from pter      End:
13,033,653 bp from pter
Size:
2,958 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
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UniProtKB/Swiss-Prot: RASFA_HUMAN, A6NK89 (See protein sequence)
Recommended Name: Ras association domain-containing protein 10  
Size: 507 amino acids; 56900 Da

Explore the universe of human proteins at neXtProt for RASSF10: NX_A6NK89

Explore proteomics data for RASSF10 at MOPED


See RASSF10 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_001073990.2  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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1 InterPro protein domain:
 IPR000159 Ras-assoc

Graphical View of Domain Structure for InterPro Entry A6NK89

ProtoNet protein and cluster: A6NK89

UniProtKB/Swiss-Prot: RASFA_HUMAN, A6NK89
Similarity: Contains 1 Ras-associating domain


RASSF10 for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Animal Models:
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
RASFA_HUMAN, A6NK89: Cytoplasm, cytosol. Cytoplasm, cytoskeleton, microtubule organizing center, centrosome.
Cytoplasm, cytoskeleton, spindle pole. Note=During interphase, predominantly cytoplasmic, although some nuclear
staining in several tumor cell contexts. During prophase, observed at developing centrosomes. Displays persistent
localization with centrosomally radiating microtubule bundles until late telophase. Associates with spindle poles
particularly during metaphase and anaphase before relocating back to the cytoplasm
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
cytoskeleton5
cytosol5
nucleus2
mitochondrion1

Gene Ontology (GO): 3 cellular component terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0000922spindle pole IEA--
GO:0005815microtubule organizing center IEA--
GO:0005829cytosol IEA--

RASSF10 for ontologies           About GeneDecksing


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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Interactions:

    Search GeneGlobe Interaction Network for RASSF10

Gene Ontology (GO): 1 biological process term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0007165signal transduction IEA--

RASSF10 for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for RASSF10 (RASFA)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for RASSF10 gene: 
NM_001080521.2  

Unigene Cluster for RASSF10:

Ras association (RalGDS/AF-6) domain family (N-terminal) member 10
Hs.134650  [show with all ESTs]
Unigene Representative Sequence: NM_001080521
2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000529419(uc021qdz.1) ENST00000340901
miRNA
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hsa-miR-30c hsa-miR-181c hsa-miR-30d hsa-miR-374a* hsa-miR-877* hsa-miR-30a hsa-miR-9 hsa-miR-3119
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  QuantiFast Probe-based Assays in human, mouse, rat RASSF10

1 DOTS entry:

DT.40125990 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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RASSF10 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: TGCGAATCCC
RASSF10 Expression
About this image


RASSF10 expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database
 selected tissues (see all 2) fully expand
 
 Liver (Hepatobiliary System)
         Mature Mesothelial Cells Hepatic Mesenchyme
 
 Kidney (Urinary System)
         Ureteric Bud Tip Cells Ureteric Bud
RASSF10 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

RASSF10 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.134650

UniProtKB/Swiss-Prot: RASFA_HUMAN, A6NK89
Tissue specificity: Expressed in brain. Tends to be down-regulated in astrocytic gliomas due to promoter
methylation. Methylation occurs early in gliomagenesis and the extent of methylation parallels with higher glioma
grades, so that methylation is observed in close to 70% WHO grade IV primary glioblastomas, but not in grade I
astrocytomas

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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RASSF10

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for RASSF10 gene from Selected species (see all 8)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Rassf101 , 5 Ras association (RalGDS/AF-6) domain family (N-terminal) more1, 5 85.21(n)1
86.59(a)1
  7 (59.13 cM)5
787481  NM_175279.31  NP_780488.21 
 1129539625 
chicken
(Gallus gallus)
Aves LOC1008590081 ras association domain-containing protein 10-like 73.46(n)
71.54(a)
  100859008  XM_003641315.2  XP_003641363.2 
tropical clawed frog
(Xenopus tropicalis)
Amphibia LOC1004922051 ras association domain-containing protein 10-like 64.11(n)
66.13(a)
  100492205  XM_002943761.2  XP_002943807.1 
zebrafish
(Danio rerio)
Actinopterygii rassf10a1 Ras association (RalGDS/AF-6) domain family (N-terminal) more 64.66(n)
64.9(a)
  559430  XM_005174361.1  XP_005174418.1 


ENSEMBL Gene Tree for RASSF10 (if available)
TreeFam Gene Tree for RASSF10 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for RASSF10 (see all 17)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 11 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1881033371,2
--13032724(+) GGCTCC/GCGGAC 1 -- ut310--------
rs1144472921,2
C--13032905(+) CTATAC/TTGGAA 1 -- ut310--------
rs1165325031,2
C--13032919(+) AAACAA/CCCCAA 1 -- ut310--------
rs353076661,2
C--13032945(+) GAGCCC/-ATTTT 1 -- ut311Minor allele frequency- -:0.50NA 2
rs11410901,2
C,F,A,H--13033155(-) AAAGAG/TGTAAG 1 -- ut3122Minor allele frequency- T:0.34MN NS EA NA WA CSA 2530
rs1140855311,2
C,F--13033297(+) CCTCCT/GAGTAA 1 -- ut311Minor allele frequency- G:0.05WA 118
rs1862267581,2
--13033408(+) ATCGTC/GGTTAA 1 -- ut310--------
rs1903876191,2
--13033463(+) GAGTTA/GCCCTT 1 -- ut310--------
rs1816565001,2
--13033478(+) TCGTAC/TTGCCA 1 -- ut310--------
rs1876726721,2
--13033651(+) CCTTAA/GCGGAT 1 -- ut310--------

HapMap Linkage Disequilibrium report for RASSF10 (13030696 - 13033653 bp)

Structural Variations
      Database of Genomic Variants (DGV) variations for RASSF10: --
Site Specific Mutation Identification with PCR Assays
Search QIAGEN SeqTarget long-range PCR primers for resequencing RASSF10
DNA2.0 Custom Variant and Variant Library Synthesis for RASSF10

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 614713    OMIM disorders: --

8 diseases for RASSF10:    
About MalaCards
astrocytoma    thyroid cancer    malaria    melanoma
obesity    thyroiditis    prostatitis    hepatitis


RASSF10 for disorders           About GeneDecksing

Genetic Association Database (GAD): RASSF10

Export disorders for RASSF10 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for RASSF10 gene, integrated from 10 sources (see all 12):
(articles sorted by number of sources associating them with RASSF10)
    Utopia: connect your pdf to the dynamic
world of online information

  1. RASSF7 is a member of a new family of RAS association domain- containing proteins and is required for completing mitosis. (PubMed id 18272789)1, 2, 3 Sherwood V.... Chalmers A.D. (Mol. Biol. Cell 2008)
  2. Epigenetic inactivation of the RASSF10 candidate tumor suppressor gene is a frequent and an early event in gliomagenesis. (PubMed id 20956940)1, 2 Hill V.K....Latif F. (Oncogene 2011)
  3. RASSF10 is epigenetically silenced and functions as a tumor suppressor in gastric cancer. (PubMed id 23428420)1 Wei Z....Cai Q. (Biochem. Biophys. Res. Commun. 2013)
  4. RASSF10 promoter hypermethylation is frequent in malignant melanoma of the skin but uncommon in nevus cell nevi. (PubMed id 22113481)1 Helmbold P....Dammann R.H. (J. Invest. Dermatol. 2012)
  5. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PubMed id 23251661)1 Comuzzie A.G....Butte N.F. (PLoS ONE 2012)
  6. Epigenetic down regulation of RASSF10 and its possible clinical implication in prostate carcinoma. (PubMed id 22415519)1 Dansranjavin T....Schagdarsurengin U. (Prostate 2012)
  7. Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies. (PubMed id 21102462)4 Elks C.E....Murray A. (Nat. Genet. 2010)
  8. Frequent epigenetic inactivation of RASSF10 in thyroid cancer. (PubMed id 19934646)1 Schagdarsurengin U....Dammann R.H. (Epigenetics 2009)
  9. The novel RASSF6 and RASSF10 candidate tumour suppressor genes are frequently epigenetically inactivated in childhood leukaemias. (PubMed id 19570220)1 Hesson L.B....Latif F. (Mol. Cancer 2009)
  10. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PubMed id 17903299)4 Kathiresan S....Cupples L.A. (BMC Med. Genet. 2007)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 644943 HGNC: 33984 Ensembl:ENSG00000189431 euGenes: HUgn644943 ECgene: RASSF10
H-InvDB: RASSF10

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for RASSF10 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for RASSF10 gene:
Search GeneIP for patents involving RASSF10

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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