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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

RASSF10 Gene

protein-coding GIFtS: 35
GCID: GC11P012990

Ras association (RalGDS/AF-6) domain family (N-terminal)...

Search for RASSF10
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(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
Ras Association (RalGDS/AF-6) Domain Family (N-Terminal) Member 10¹ ²
Ras Association Domain-Containing Protein 10²

External Ids:	HGNC: 33984¹	Entrez Gene: 644943²	Ensembl: ENSG00000189431⁷	OMIM: 614713⁵	UniProtKB: A6NK89³

Export aliases for RASSF10 gene to outside databases

Previous GC identifer: GC11P012710

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000011.9 NC_018922.1 NT_009237.18

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the RASSF10 gene promoter:
Spz1 POU3F1 CUTL1 RelA S8 c-Rel POU2F1 POU2F1a HSF2 Pax-4a
Other transcription factors

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Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RASSF10

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11p15.2 Ensembl cytogenetic band: 11p15.2 HGNC cytogenetic band: 11p15.2

RASSF10 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RASSF10 gene location

GeneLoc information about chromosome 11 GeneLoc Exon Structure

GeneLoc location for GC11P012990: view genomic region (about GC identifiers)

Start:	13,030,696 bp from pter	End:	13,032,647 bp from pter
Size:	1,952 bases	Orientation:	plus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
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About This Section

UniProtKB/Swiss-Prot: RASFA_HUMAN, A6NK89 (See protein sequence)

Recommended Name: Ras association domain-containing protein 10

Size: 507 amino acids; 56900 Da

Subcellular location: Cytoplasm, cytosol. Cytoplasm, cytoskeleton, centrosome. Cytoplasm, cytoskeleton, spindle pole.

Note=During interphase, predominantly cytoplasmic, although some nuclear staining in several tumor cell contexts.

During prophase, observed at developing centrosomes. Displays persistent localization with centrosomally radiating

microtubule bundles until late telophase. Associates with spindle poles particularly during metaphase and anaphase

before relocating back to the cytoplasm

Explore the universe of human proteins at neXtProt for RASSF10: NX_A6NK89

Post-translational modifications:

View modification sites using PhosphoSitePlus²

View neXtProt modification sites for NX_A6NK89

RASSF10 Protein expression data from MOPED and PaxDb: --

REFSEQ proteins: NP_001073990.2
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Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0000922	spindle pole	IEA	--
GO:0005815	microtubule organizing center	IEA	--
GO:0005829	cytosol	IEA	--

RASSF10 for ontologies About GeneDecksing

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(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

RASSF10 for domains About GeneDecksing

1 InterPro domain/family:

IPR000159 Ras-assoc

Graphical View of Domain Structure for InterPro Entry A6NK89

ProtoNet protein and cluster: A6NK89

UniProtKB/Swiss-Prot: RASFA_HUMAN, A6NK89

Similarity: Contains 1 Ras-associating domain

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Animal Models:

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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for RASSF10

Gene Ontology (GO): 1 biological process term (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0007165	signal transduction	IEA	--

RASSF10 for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

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(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
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About This Section

REFSEQ mRNAs for RASSF10 gene:

NM_001080521.2

Unigene Cluster for RASSF10:

Ras association (RalGDS/AF-6) domain family (N-terminal) member 10

Hs.134650 [show with all ESTs]

Unigene Representative Sequence: NM_001080521

2 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000529419(uc021qdz.1) ENST00000340901

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1 DOTS entry:

DT.40125990

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

RASSF10 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: TGCGAATCCC

About this image

RASSF10 expression in embryonic tissues and stem cells
Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

Stem Cell Differentiation: 1 LifeMap Cell

Name

Category

Posterior foregut-like cells (A scalable, suspensi...)

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

Genevestigator expression for RASSF10

SOURCE GeneReport for Unigene cluster: Hs.134650

UniProtKB/Swiss-Prot: RASFA_HUMAN, A6NK89

Tissue specificity: Expressed in brain. Tends to be down-regulated in astrocytic gliomas due to promoter methylation.

Methylation occurs early in gliomagenesis and the extent of methylation parallels with higher glioma grades, so that

methylation is observed in close to 70% WHO grade IV primary glioblastomas, but not in grade I astrocytomas

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In Situ
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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of animals.

Orthologs for RASSF10 gene from 4/8 species (see all 8) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Details
mouse (Mus musculus)	Mammalia	Rassf10^{1 , 5}	Ras association (RalGDS/AF-6) domain family (N-terminal) more^{1, 5}	85.21(n)¹ 86.59(a)¹	7 (59.13 cM)⁵ 78748¹ NM_175279.3¹ NP_780488.2¹ 112954194⁵
chicken (Gallus gallus)	Aves	LOC100859008¹	ras association domain-containing protein 10-like	76.19(n) 74.64(a)	100859008 XM_003641315.1 XP_003641363.1
zebrafish (Danio rerio)	Actinopterygii	rassf10a¹	Ras association (RalGDS/AF-6) domain family (N-terminal) more	64.66(n) 64.9(a)	559430 XM_682769.4 XP_687861.3
fruit fly (Drosophila melanogaster)	Insecta	CG13875¹	CG13875	39.51(n) 24.87(a)	38024 NM_138161.1 NP_612005.1

ENSEMBL Gene Tree for RASSF10 (if available)
TreeFam Gene Tree for RASSF10 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 11 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs74430844^1,2		--	12709381(+)	`ATTAAT/CACTTT`	1	--	int¹		1		NA	120
rs74643780^1,2	F	--	12709576(+)	`AAATTC/TCTGAC`	1	--	int¹		1		WA	118
rs12576795^1,2	H	--	12709635(+)	`TTCTAC/GAATGc`	1	--	int¹		0	--	--	--	--
rs7105342^1,2	C,F	--	12709910(+)	`CTAGCG/ATAGGA`	1	--	int¹		1		WA	118
rs79360235^1,2	F	--	12710454(+)	`CATTGC/TCGAAT`	1	--	nc-transcript-variant		1		WA	118
rs75100246^1,2		--	12710839(+)	`CGGCAC/GAGCAG`	1	--	nc-transcript-variant		0	--	--	--	--
rs7932060^1,2	C	--	12710918(+)	`GGCGCA/GGCAAG`	1	--	us2k¹		0	--	--	--	--
rs61879068^1,2		--	12711440(+)	`GGCGAC/AGGAGA`	1	--	us2k¹		1		NA	2
rs182200748^1,2		--	13029023(+)	`GATAAG/TTTGTT`	2	--	us2k¹ int¹		0	--	--	--	--
rs186485720^1,2		--	13029250(+)	`GCTGTC/TCTGAC`	2	--	us2k¹ int¹		0	--	--	--	--

HapMap Linkage Disequilibrium report for RASSF10 (13030696 - 13032647 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for RASSF10: --

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

RASSF10 for disorders About MalaCards

RASSF10 for disorders About GeneDecksing

OMIM gene information: 614713 OMIM disorders: --

Export disorders for RASSF10 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for RASSF10 gene integrated from 9 sources:
(articles sorted by number of sources associating them with RASSF10)

Utopia: connect your pdf to the dynamic
world of online information

RASSF7 Is a Member of a New Family of RAS Association Domain-containing Proteins and Is Required for Completing Mitosis. (PubMed id 18272789)^{1, 2, 3} Sherwood V....Chalmers A.D. (2008)
Epigenetic inactivation of the RASSF10 candidate tumo r suppressor gene is a frequent and an early event in gliomagenesis. (PubMed id 20956940)^{1, 2} Hill V.K....Latif F. (2011)
RASSF10 promoter hypermethylation is frequent in malig nant melanoma of the skin but uncommon in nevus cell nevi. (PubMed id 22113481)¹ Helmbold P....Dammann R.H. (2012)
Epigenetic down regulation of RASSF10 and its possible clinical implication in prostate carcinoma. (PubMed id 22415519)¹ Dansranjavin T....Schagdarsurengin U. (2012)
Frequent epigenetic inactivation of RASSF10 in thyroi d cancer. (PubMed id 19934646)¹ Schagdarsurengin U....Dammann R.H. (2009)
The novel RASSF6 and RASSF10 candidate tumour suppres sor genes are frequently epigenetically inactivated in childhood leukaemias. (PubMed id 19570220)¹ Hesson L.B....Latif F. (2009)
Human chromosome 11 DNA sequence and analysis including novel gene identification. (PubMed id 16554811)² Taylor T.D....Sakaki Y. (2006)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 644943	HGNC: 33984	Ensembl:ENSG00000189431	euGenes: HUgn644943	ECgene: RASSF10
H-InvDB: RASSF10

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for RASSF10	Pharmacogenomics, SNPs, Pathways

Intellectual Property for RASSF10 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for RASSF10 gene:
Search GeneIP for patents involving RASSF10

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

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GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013 , 13 May 2013

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Category			VWF (GIFTS: 73) von Willebrand factor
GIFtS Group

The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

The GeneCards Human Gene Database

Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

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RASSF10 Gene

Ras association (RalGDS/AF-6) domain family (N-terminal)...

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RASSF10 Gene

Ras association (RalGDS/AF-6) domain family (N-terminal)...

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