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Aliases for RASGEF1B Gene

Aliases for RASGEF1B Gene

  • RasGEF Domain Family, Member 1B 2 3
  • GPIG4 3 4 6
  • GPI Gamma-4 3 4
  • Ras-GEF Domain-Containing Family Member 1B 3
  • GPI-Gamma 4 3

External Ids for RASGEF1B Gene

Previous GeneCards Identifiers for RASGEF1B Gene

  • GC04M082806
  • GC04M082705
  • GC04M082567
  • GC04M082348
  • GC04M078092

Summaries for RASGEF1B Gene

GeneCards Summary for RASGEF1B Gene

RASGEF1B (RasGEF Domain Family, Member 1B) is a Protein Coding gene. GO annotations related to this gene include Ras guanyl-nucleotide exchange factor activity. An important paralog of this gene is RAPGEF6.

UniProtKB/Swiss-Prot for RASGEF1B Gene

  • Guanine nucleotide exchange factor (GEF) with specificity for RAP2A, it doesnt seems to activate other Ras family proteins (in vitro).

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RASGEF1B Gene

Genomics for RASGEF1B Gene

Regulatory Elements for RASGEF1B Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for RASGEF1B Gene

Start:
81,426,393 bp from pter
End:
82,044,244 bp from pter
Size:
617,852 bases
Orientation:
Minus strand

Genomic View for RASGEF1B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RASGEF1B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RASGEF1B Gene

Proteins for RASGEF1B Gene

  • Protein details for RASGEF1B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q0VAM2-RGF1B_HUMAN
    Recommended name:
    Ras-GEF domain-containing family member 1B
    Protein Accession:
    Q0VAM2
    Secondary Accessions:
    • Q0VAM1
    • Q4W5L7
    • Q4W5M3
    • Q96MY8

    Protein attributes for RASGEF1B Gene

    Size:
    473 amino acids
    Molecular mass:
    55359 Da
    Quaternary structure:
    • Interacts with Ras family proteins (By similarity). Interacts with CCDC124 during cytokinesis.

    Alternative splice isoforms for RASGEF1B Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RASGEF1B Gene

Proteomics data for RASGEF1B Gene at MOPED

Post-translational modifications for RASGEF1B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for RASGEF1B Gene

Domains for RASGEF1B Gene

Suggested Antigen Peptide Sequences for RASGEF1B Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q0VAM2

UniProtKB/Swiss-Prot:

RGF1B_HUMAN :
  • Q0VAM2
Domain:
  • Contains 1 N-terminal Ras-GEF domain.
  • Contains 1 Ras-GEF domain.
genes like me logo Genes that share domains with RASGEF1B: view

No data available for Gene Families for RASGEF1B Gene

Function for RASGEF1B Gene

Molecular function for RASGEF1B Gene

UniProtKB/Swiss-Prot Function: Guanine nucleotide exchange factor (GEF) with specificity for RAP2A, it doesnt seems to activate other Ras family proteins (in vitro).
UniProtKB/Swiss-Prot Induction: Up-regulated in macrophages stimulated with IFNG, GPI-mucins or bacterial lipopolysaccharides (LPS).

Gene Ontology (GO) - Molecular Function for RASGEF1B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005085 guanyl-nucleotide exchange factor activity --
GO:0005088 Ras guanyl-nucleotide exchange factor activity IDA 19645719
genes like me logo Genes that share ontologies with RASGEF1B: view

Phenotypes for RASGEF1B Gene

GenomeRNAi human phenotypes for RASGEF1B:
genes like me logo Genes that share phenotypes with RASGEF1B: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RASGEF1B

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RASGEF1B Gene

Localization for RASGEF1B Gene

Subcellular locations from UniProtKB/Swiss-Prot for RASGEF1B Gene

Early endosome. Late endosome. Midbody. Note=May shuttle between early and late endosomes (By similarity). Localizes to midbody at telophase. {ECO:0000250}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RASGEF1B Gene COMPARTMENTS Subcellular localization image for RASGEF1B gene
Compartment Confidence
cytosol 3
endosome 2
nucleus 2

Gene Ontology (GO) - Cellular Components for RASGEF1B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
GO:0005768 endosome --
GO:0005769 early endosome IEA --
GO:0005770 late endosome IEA --
GO:0030496 midbody IEA --
genes like me logo Genes that share ontologies with RASGEF1B: view

Pathways for RASGEF1B Gene

SuperPathways for RASGEF1B Gene

No Data Available

Interacting Proteins for RASGEF1B Gene

Gene Ontology (GO) - Biological Process for RASGEF1B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007264 small GTPase mediated signal transduction IEA --
GO:0043547 positive regulation of GTPase activity IEA --
GO:0051056 regulation of small GTPase mediated signal transduction --
genes like me logo Genes that share ontologies with RASGEF1B: view

No data available for Pathways by source for RASGEF1B Gene

Compounds for RASGEF1B Gene

(3) HMDB Compounds for RASGEF1B Gene

Compound Synonyms Cas Number PubMed IDs
Guanosine diphosphate
  • 5'-GDP
146-91-8
Guanosine monophosphate
  • 5'-GMP
85-32-5
Guanosine triphosphate
  • 5'-GTP
86-01-1
genes like me logo Genes that share compounds with RASGEF1B: view

Transcripts for RASGEF1B Gene

Unigene Clusters for RASGEF1B Gene

RasGEF domain family, member 1B:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RASGEF1B

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for RASGEF1B

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RASGEF1B Gene

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b · 2c ^ 3 ^ 4a · 4b ^ 5a · 5b ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14
SP1: - -
SP2: - -
SP3: - -
SP4: -
SP5:

Relevant External Links for RASGEF1B Gene

GeneLoc Exon Structure for
RASGEF1B
ECgene alternative splicing isoforms for
RASGEF1B

Expression for RASGEF1B Gene

mRNA expression in normal human tissues for RASGEF1B Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for RASGEF1B Gene

This gene is overexpressed in Liver (4.5).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for RASGEF1B Gene

SOURCE GeneReport for Unigene cluster for RASGEF1B Gene Hs.591696

genes like me logo Genes that share expressions with RASGEF1B: view

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for RASGEF1B Gene

Orthologs for RASGEF1B Gene

This gene was present in the common ancestor of animals.

Orthologs for RASGEF1B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RASGEF1B 35
  • 99.86 (n)
  • 100 (a)
RASGEF1B 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RASGEF1B 35
  • 92.73 (n)
  • 98.73 (a)
RASGEF1B 36
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RASGEF1B 35
  • 93.43 (n)
  • 98.31 (a)
RASGEF1B 36
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rasgef1b 35
  • 87.32 (n)
  • 97.46 (a)
Rasgef1b 16
Rasgef1b 36
  • 97 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia RASGEF1B 36
  • 91 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rasgef1b 35
  • 86.47 (n)
  • 95.35 (a)
chicken
(Gallus gallus)
Aves RASGEF1B 35
  • 82.42 (n)
  • 92.8 (a)
RASGEF1B 36
  • 85 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RASGEF1B 36
  • 82 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rasgef1b 35
  • 78.67 (n)
  • 87.08 (a)
zebrafish
(Danio rerio)
Actinopterygii -- 35
rasgef1ba 35
  • 73.31 (n)
  • 85.59 (a)
rasgef1ba 36
  • 79 (a)
OneToMany
rasgef1bb 36
  • 70 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta CG4853 36
  • 25 (a)
ManyToMany
CG7369 35
  • 54.91 (n)
  • 51.83 (a)
CG7369 36
  • 35 (a)
ManyToMany
worm
(Caenorhabditis elegans)
Secernentea R05G6.10 35
  • 51.25 (n)
  • 40.14 (a)
R05G6.10 36
  • 39 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 23 (a)
OneToMany
Species with no ortholog for RASGEF1B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RASGEF1B Gene

ENSEMBL:
Gene Tree for RASGEF1B (if available)
TreeFam:
Gene Tree for RASGEF1B (if available)

Paralogs for RASGEF1B Gene

Selected SIMAP similar genes for RASGEF1B Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with RASGEF1B: view

Variants for RASGEF1B Gene

Sequence variations from dbSNP and Humsavar for RASGEF1B Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs748436 -- 81,460,473(-) AGTCC(A/G)TAGCT intron-variant
rs755527 -- 81,447,082(+) CAAAG(C/T)AGTCA intron-variant
rs895086 -- 81,460,159(+) TATCT(A/G)TAAAG intron-variant
rs966753 -- 81,460,312(+) GGCCA(G/T)AGGCT intron-variant
rs1031166 -- 81,468,022(+) ttaaa(A/C/T)tttgt intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RASGEF1B Gene

Variant ID Type Subtype PubMed ID
nsv829985 CNV Loss 17160897
nsv4404 CNV Loss 18451855
nsv829986 CNV Gain+Loss 17160897

Relevant External Links for RASGEF1B Gene

HapMap Linkage Disequilibrium report
RASGEF1B
Human Gene Mutation Database (HGMD)
RASGEF1B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RASGEF1B Gene

Disorders for RASGEF1B Gene

Relevant External Links for RASGEF1B

Genetic Association Database (GAD)
RASGEF1B
genes like me logo Genes that share disorders with RASGEF1B: view

No data available for UniProtKB/Swiss-Prot for RASGEF1B Gene

Publications for RASGEF1B Gene

  1. Identification and characterization of a novel mouse gene encoding a Ras-associated guanine nucleotide exchange factor: expression in macrophages and myocarditis elicited by Trypanosoma cruzi parasites. (PMID: 12488504) Ferreira L.R.P. … Gazzinelli R.T. (J. Leukoc. Biol. 2002) 2 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. Many sequence variants affecting diversity of adult human height. (PMID: 18391951) Gudbjartsson D.F. … Stefansson K. (Nat. Genet. 2008) 3 48
  4. RasGEF1A and RasGEF1B are guanine nucleotide exchange factors that discriminate between Rap GTP-binding proteins and mediate Rap2- specific nucleotide exchange. (PMID: 19645719) Yaman E. … Tazebay U.H. (FEBS J. 2009) 3 4
  5. 8.6Mb interstitial deletion of chromosome 4q13.3q21.23 in a boy with cognitive impairment, short stature, hearing loss, skeletal abnormalities and facial dysmorphism. (PMID: 22303795) Lipska B.S. … Limon J. (Genet. Couns. 2011) 3

Products for RASGEF1B Gene

Sources for RASGEF1B Gene

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