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Aliases for RASAL3 Gene

Aliases for RASAL3 Gene

  • RAS Protein Activator Like 3 2 3 5

External Ids for RASAL3 Gene

Previous GeneCards Identifiers for RASAL3 Gene

  • GC19M015426
  • GC19M015562
  • GC19M015132

Summaries for RASAL3 Gene

Entrez Gene Summary for RASAL3 Gene

  • This gene belongs to the Ras GTPase-activating proteins (RasGAP) family and encodes a protein with pleckstrin homology (PH), C2, and Ras GTPase-activation protein (RasGAP) domains. This protein is localized near or at the plasma membrane when expressed exogenously. Reduced expression of this gene in some cell lines resulted in increased levels of the active form of Ras (Ras-GTP), suggesting that this gene may play a role in negatively regulating the Ras signaling pathway. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jan 2017]

GeneCards Summary for RASAL3 Gene

RASAL3 (RAS Protein Activator Like 3) is a Protein Coding gene. Among its related pathways are RET signaling and HIV Life Cycle. GO annotations related to this gene include GTPase activator activity. An important paralog of this gene is SYNGAP1.

UniProtKB/Swiss-Prot for RASAL3 Gene

  • Functions as a Ras GTPase-activating protein. Plays an important role in the expansion and functions of natural killer T (NKT) cells in the liver by negatively regulating RAS activity and the down-stream ERK signaling pathway.

Additional gene information for RASAL3 Gene

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RASAL3 Gene

Genomics for RASAL3 Gene

Regulatory Elements for RASAL3 Gene

Enhancers for RASAL3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19H015466 1.4 FANTOM5 Ensembl ENCODE 14.7 -2.4 -2362 1 PTBP1 BATF ZNF366 ZNF143 FOS RCOR1 ETV6 RUNX3 CREM IKZF2 RASAL3 GC19M015481
GH19H015295 1.6 Ensembl ENCODE dbSUPER 11 +165.9 165852 5 FOXA2 MLX ARNT ARID4B FEZF1 ZNF2 SLC30A9 ZNF766 SP5 ZHX2 AKAP8 ZNF333 BRD4 EPHX3 NOTCH3 RASAL3 ENSG00000268189 SNRPGP15 RNU6-782P CYP4F24P
GH19H015291 1.2 Ensembl ENCODE dbSUPER 11 +171.3 171286 4 HLF CEBPB ZEB2 EBF1 NR3C1 REST ZIC2 RFX5 JUND POLR2A BRD4 AKAP8 AKAP8L EPHX3 RASAL3 RNU6-782P SYDE1 GC19P015294 GC19P015309
GH19H015550 1 Ensembl ENCODE 12.2 -86.8 -86837 1 ZSCAN5A CTCF KLF1 ZNF777 ZBTB21 ZFHX2 GLIS2 EGR1 PATZ1 KLF8 CYP4F22 PGLYRP2 RASAL3 AKAP8L CYP4F11 GC19P015545 CYP4F23P
GH19H015463 0.8 ENCODE 13.9 +0.3 316 2 HDGF RAD21 ZNF143 ZNF207 ETV6 RUNX3 CREM IKZF2 SMARCA5 HCFC1 RASAL3 WIZ
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RASAL3 on UCSC Golden Path with GeneCards custom track

Promoters for RASAL3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000107652 371 801 CTCF HDGF MAX RELA POLR2A EED ZNF143 ZNF207 ZSCAN29 ETV6

Genomic Location for RASAL3 Gene

Chromosome:
19
Start:
15,451,624 bp from pter
End:
15,464,571 bp from pter
Size:
12,948 bases
Orientation:
Minus strand

Genomic View for RASAL3 Gene

Genes around RASAL3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RASAL3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RASAL3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RASAL3 Gene

Proteins for RASAL3 Gene

  • Protein details for RASAL3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86YV0-RASL3_HUMAN
    Recommended name:
    RAS protein activator like-3
    Protein Accession:
    Q86YV0
    Secondary Accessions:
    • Q8N2T9
    • Q9H735

    Protein attributes for RASAL3 Gene

    Size:
    1011 amino acids
    Molecular mass:
    111898 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH30281.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAB15064.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAC56928.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=BAC56928.1; Type=Erroneous termination; Positions=723; Note=Translated as Arg.; Evidence={ECO:0000305};

    Alternative splice isoforms for RASAL3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RASAL3 Gene

Post-translational modifications for RASAL3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RASAL3 Gene

No data available for DME Specific Peptides for RASAL3 Gene

Domains & Families for RASAL3 Gene

Gene Families for RASAL3 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Suggested Antigen Peptide Sequences for RASAL3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RASAL3: view

No data available for UniProtKB/Swiss-Prot for RASAL3 Gene

Function for RASAL3 Gene

Molecular function for RASAL3 Gene

UniProtKB/Swiss-Prot Function:
Functions as a Ras GTPase-activating protein. Plays an important role in the expansion and functions of natural killer T (NKT) cells in the liver by negatively regulating RAS activity and the down-stream ERK signaling pathway.

Phenotypes From GWAS Catalog for RASAL3 Gene

Gene Ontology (GO) - Molecular Function for RASAL3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005096 GTPase activator activity IBA --
genes like me logo Genes that share ontologies with RASAL3: view
genes like me logo Genes that share phenotypes with RASAL3: view

Animal Models for RASAL3 Gene

MGI Knock Outs for RASAL3:

Animal Model Products

CRISPR Products

miRNA for RASAL3 Gene

miRTarBase miRNAs that target RASAL3

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for RASAL3
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for RASAL3 Gene

Localization for RASAL3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for RASAL3 Gene

Cytoplasm. Cytoplasm, cell cortex.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RASAL3 gene
Compartment Confidence
extracellular 5
cytosol 5
plasma membrane 4
nucleus 2
mitochondrion 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for RASAL3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA,IDA 25652366
GO:0005829 cytosol TAS --
GO:0005938 cell cortex IEA --
GO:0016020 membrane IDA 19946888
GO:0031235 intrinsic component of the cytoplasmic side of the plasma membrane IBA --
genes like me logo Genes that share ontologies with RASAL3: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for RASAL3 Gene

Pathways & Interactions for RASAL3 Gene

SuperPathways for RASAL3 Gene

SuperPathway Contained pathways
1 RET signaling
2 Developmental Biology
3 Cytokine Signaling in Immune system
4 HIV Life Cycle
.45
5 Innate Immune System
genes like me logo Genes that share pathways with RASAL3: view

Pathways by source for RASAL3 Gene

Gene Ontology (GO) - Biological Process for RASAL3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000165 MAPK cascade TAS --
GO:0007165 signal transduction IEA --
GO:0043087 regulation of GTPase activity IEA --
GO:0043547 positive regulation of GTPase activity IEA --
GO:0046580 negative regulation of Ras protein signal transduction IMP 25652366
genes like me logo Genes that share ontologies with RASAL3: view

No data available for SIGNOR curated interactions for RASAL3 Gene

Drugs & Compounds for RASAL3 Gene

No Compound Related Data Available

Transcripts for RASAL3 Gene

Unigene Clusters for RASAL3 Gene

RAS protein activator like 3:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for RASAL3
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RASAL3 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9a · 9b ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14 ^ 15 ^ 16 ^ 17a · 17b ^ 18a · 18b ^ 19a · 19b
SP1:
SP2:
SP3: - -
SP4:
SP5: - - -
SP6:
SP7:
SP8:
SP9: -
SP10:

Relevant External Links for RASAL3 Gene

GeneLoc Exon Structure for
RASAL3
ECgene alternative splicing isoforms for
RASAL3

Expression for RASAL3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RASAL3 Gene

mRNA differential expression in normal tissues according to GTEx for RASAL3 Gene

This gene is overexpressed in Whole Blood (x17.0), Spleen (x7.6), and Small Intestine - Terminal Ileum (x4.6).

Protein differential expression in normal tissues from HIPED for RASAL3 Gene

This gene is overexpressed in Tlymphocyte (26.0), Peripheral blood mononuclear cells (19.3), NK cells (8.6), and CD8 Tcells (6.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for RASAL3 Gene



Protein tissue co-expression partners for RASAL3 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of RASAL3 Gene:

RASAL3

SOURCE GeneReport for Unigene cluster for RASAL3 Gene:

Hs.136979

mRNA Expression by UniProt/SwissProt for RASAL3 Gene:

Q86YV0-RASL3_HUMAN
Tissue specificity: Predominantly expressed in cells of hematopoietic lineages.

Evidence on tissue expression from TISSUES for RASAL3 Gene

  • Intestine(4.3)
  • Spleen(4.3)
  • Blood(4.1)
  • Liver(4.1)
genes like me logo Genes that share expression patterns with RASAL3: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and Phenotype-based relationships between genes and organs from Gene ORGANizer for RASAL3 Gene

Orthologs for RASAL3 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for RASAL3 Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia RASAL3 33 34
  • 85.87 (n)
cow
(Bos Taurus)
Mammalia RASAL3 33 34
  • 83.75 (n)
mouse
(Mus musculus)
Mammalia Rasal3 33 16 34
  • 80.17 (n)
rat
(Rattus norvegicus)
Mammalia Rasal3 33
  • 79.74 (n)
oppossum
(Monodelphis domestica)
Mammalia RASAL3 34
  • 65 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RASAL3 34
  • 59 (a)
OneToOne
chicken
(Gallus gallus)
Aves RASAL3 34
  • 43 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia -- 34
  • 30 (a)
ManyToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia rasal3 33
  • 50.33 (n)
zebrafish
(Danio rerio)
Actinopterygii rasal3 34
  • 31 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG42684 34
  • 14 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea gap-2 34
  • 20 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes BUD2 34
  • 14 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.6146 34
  • 23 (a)
OneToMany
Species where no ortholog for RASAL3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RASAL3 Gene

ENSEMBL:
Gene Tree for RASAL3 (if available)
TreeFam:
Gene Tree for RASAL3 (if available)

Paralogs for RASAL3 Gene

Paralogs for RASAL3 Gene

(4) SIMAP similar genes for RASAL3 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with RASAL3: view

Variants for RASAL3 Gene

Sequence variations from dbSNP and Humsavar for RASAL3 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs76267899 Uncertain significance 15,464,363(+) TGGTT(A/C/G/T)GGGGG nc-transcript-variant, utr-variant-5-prime
rs1000266910 -- 15,461,365(+) CGAGG(C/G)AGAGG intron-variant
rs1000599366 -- 15,463,033(+) TCTTC(C/T)AGATC intron-variant
rs1000651772 -- 15,462,716(+) GGGAG(C/G)CTGAG intron-variant
rs1000833888 -- 15,459,107(+) CTAAT(C/T)TTTAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RASAL3 Gene

Variant ID Type Subtype PubMed ID
esv2551856 CNV deletion 19546169
nsv1064684 CNV gain 25217958
nsv1118816 CNV deletion 24896259
nsv1131404 CNV deletion 24896259
nsv482216 CNV loss 20164927
nsv833765 CNV loss 17160897

Variation tolerance for RASAL3 Gene

Residual Variation Intolerance Score: 69.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.55; 72.17% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RASAL3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RASAL3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RASAL3 Gene

Disorders for RASAL3 Gene

Relevant External Links for RASAL3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RASAL3

No disorders were found for RASAL3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RASAL3 Gene

Publications for RASAL3 Gene

  1. RASAL3, a novel hematopoietic RasGAP protein, regulates the number and functions of NKT cells. (PMID: 25652366) Saito S … Fujii M (European journal of immunology 2015) 3 4 60
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 60
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 60
  4. N-terminome analysis of the human mitochondrial proteome. (PMID: 25944712) Vaca Jacome AS … Carapito C (Proteomics 2015) 4 60
  5. An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome. (PMID: 24275569) Bian Y … Zou H (Journal of proteomics 2014) 4 60

Products for RASAL3 Gene

Sources for RASAL3 Gene

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