Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RASA4CP Gene

Aliases for RASA4CP Gene

  • RAS P21 Protein Activator 4C, Pseudogene 2 3 5
  • RAS P21 Protein Activator 4 Pseudogene 3
  • RASA4P 3

External Ids for RASA4CP Gene

Previous GeneCards Identifiers for RASA4CP Gene

  • GC07M044072

Summaries for RASA4CP Gene

GeneCards Summary for RASA4CP Gene

RASA4CP (RAS P21 Protein Activator 4C, Pseudogene) is a Pseudogene.

Additional gene information for RASA4CP Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RASA4CP Gene

Genomics for RASA4CP Gene

Regulatory Elements for RASA4CP Gene

Enhancers for RASA4CP Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H044043 1.7 FANTOM5 ENCODE dbSUPER 31.1 -3.9 -3873 4.1 HDGF PKNOX1 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF143 ZNF207 SP3 POLM RASA4CP ENSG00000241057 ENSG00000239556 DBNL STK17A MIR6837
GH07H044079 1.6 Ensembl ENCODE dbSUPER 30.5 -40.9 -40910 6.4 HDGF MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF766 POLM RASA4CP ENSG00000239556 ENSG00000228434 SPDYE1 DDX56 TMED4 AEBP1
GH07H044071 1.4 Ensembl ENCODE dbSUPER 31.2 -32.0 -31959 5.3 ELF3 FOXA2 NFIB ARID4B KLF17 ZSCAN9 RAD21 YY1 SLC30A9 FOS POLM RASA4CP UBE2D4 MIR6838
GH07H044086 1.5 FANTOM5 Ensembl ENCODE dbSUPER 16.4 -46.4 -46423 3.4 BCOR ZNF146 ZNF362 SAP130 ELF1 YY1 JUND POLR2A MXD3 ZNF580 POLM RASA4CP UBE2D4 ENSG00000241057 ENSG00000239775 PGAM2 POLD2 AEBP1 YKT6
GH07H044063 0.7 Ensembl ENCODE 31.4 -22.2 -22164 1.1 POLR2A REST RASA4CP POLM AEBP1 ENSG00000239775 PIR32362
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RASA4CP on UCSC Golden Path with GeneCards custom track

Promoters for RASA4CP Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000211773 1192 201 CTCF RB1 BACH1 POLR2A ZNF143 ZNF207 ZSCAN29 SMARCA5 ZNF687 L3MBTL2

Genomic Locations for RASA4CP Gene

Genomic Locations for RASA4CP Gene
chr7:44,026,951-44,041,892
(GRCh38/hg38)
Size:
14,942 bases
Orientation:
Minus strand
chr7:44,066,550-44,081,491
(GRCh37/hg19)

Genomic View for RASA4CP Gene

Genes around RASA4CP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RASA4CP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RASA4CP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RASA4CP Gene

Proteins for RASA4CP Gene

Post-translational modifications for RASA4CP Gene

No Post-translational modifications

No data available for DME Specific Peptides for RASA4CP Gene

Domains & Families for RASA4CP Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RASA4CP Gene

Function for RASA4CP Gene

Phenotypes From GWAS Catalog for RASA4CP Gene

Phenotypes for RASA4CP Gene

GenomeRNAi human phenotypes for RASA4CP:
genes like me logo Genes that share phenotypes with RASA4CP: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RASA4CP Gene

Localization for RASA4CP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RASA4CP Gene

Pathways & Interactions for RASA4CP Gene

SuperPathways for RASA4CP Gene

No Data Available

Interacting Proteins for RASA4CP Gene

Gene Ontology (GO) - Biological Process for RASA4CP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RASA4CP Gene

Drugs & Compounds for RASA4CP Gene

No Compound Related Data Available

Transcripts for RASA4CP Gene

mRNA/cDNA for RASA4CP Gene

(5) Additional mRNA sequences :
(8) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RASA4CP Gene

RAS p21 protein activator 4C, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RASA4CP Gene

No ASD Table

Relevant External Links for RASA4CP Gene

GeneLoc Exon Structure for
RASA4CP
ECgene alternative splicing isoforms for
RASA4CP

Expression for RASA4CP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RASA4CP Gene

NURSA nuclear receptor signaling pathways regulating expression of RASA4CP Gene:

RASA4CP

SOURCE GeneReport for Unigene cluster for RASA4CP Gene:

Hs.632627
genes like me logo Genes that share expression patterns with RASA4CP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RASA4CP Gene

Orthologs for RASA4CP Gene

Evolution for RASA4CP Gene

ENSEMBL:
Gene Tree for RASA4CP (if available)
TreeFam:
Gene Tree for RASA4CP (if available)

No data available for Orthologs for RASA4CP Gene

Paralogs for RASA4CP Gene

No data available for Paralogs for RASA4CP Gene

Variants for RASA4CP Gene

Sequence variations from dbSNP and Humsavar for RASA4CP Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000316509 -- 44,042,167(+) CTGGG(C/T)ATGGT intron-variant, upstream-variant-2KB
rs1000683701 -- 44,041,939(+) TGGTT(C/G)TAGGA intron-variant, upstream-variant-2KB
rs1001043627 -- 44,041,403(+) ACATT(A/C)TTTTG intron-variant, upstream-variant-2KB
rs1001556306 -- 44,041,626(+) AACTC(C/T)TGACC intron-variant, upstream-variant-2KB
rs1001715756 -- 44,037,677(+) CACGT(A/G)CCTGT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RASA4CP Gene

Variant ID Type Subtype PubMed ID
nsv966788 CNV duplication 23825009
nsv830980 CNV loss 17160897
nsv8082 CNV gain 18304495
nsv428165 CNV gain 18775914
nsv1153284 CNV duplication 26484159
nsv1115742 CNV duplication 24896259
esv3365293 CNV duplication 20981092
esv27186 CNV gain 19812545
dgv3785e59 CNV duplication 20981092

Relevant External Links for RASA4CP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RASA4CP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RASA4CP Gene

Disorders for RASA4CP Gene

Relevant External Links for RASA4CP

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RASA4CP

No disorders were found for RASA4CP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RASA4CP Gene

Publications for RASA4CP Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 60

Products for RASA4CP Gene

Sources for RASA4CP Gene

Content
Loading form....