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RASA4B Gene

protein-coding   GIFtS: 31
GCID: GC07M102122

RAS P21 Protein Activator 4B

  Search for RASA4B
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
RAS P21 Protein Activator 4B1 2
Putative Ras GTPase-Activating Protein 4B2

External Ids:    HGNC: 352021   Entrez Gene: 1002719272   Ensembl: ENSG000001706677   UniProtKB: C9J7983   

Export aliases for RASA4B gene to outside databases

Previous GC identifers: GC00U923094 GC07M101915 GC07M101483


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for RASA4B Gene:
RASA4B (RAS p21 protein activator 4B) is a protein-coding gene. GO annotations related to this gene include phospholipid binding and GTPase activator activity. An important paralog of this gene is SYNGAP1.

UniProtKB/Swiss-Prot: RAS4B_HUMAN, C9J798
Function: Ca(2+)-dependent Ras GTPase-activating protein, that may play a role in the Ras-MAPK pathway (By
similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Search for regulatory transcription factor binding sites for RASA4B
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for RASA4B

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat RASA4B


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 7q22.1   Ensembl cytogenetic band:  7q22.1   HGNC cytogenetic band: 7q22.1

RASA4B Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RASA4B gene location

GeneLoc information about chromosome 7         GeneLoc Exon Structure

GeneLoc location for GC07M102122:  view genomic region     (about GC identifiers)

Start:
102,122,892 bp from pter      End:
102,158,228 bp from pter
Size:
35,337 bases      Orientation:
minus strand

1 alternative location:
Chr7-,CRA_TCAG 101,483,887-101,518,525     

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: RAS4B_HUMAN, C9J798 (See protein sequence)
Recommended Name: Putative Ras GTPase-activating protein 4B  
Size: 803 amino acids; 90406 Da
Caution: Could be the product of a pseudogene

Explore the universe of human proteins at neXtProt for RASA4B: NX_C9J798

Explore proteomics data for RASA4B at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See RASA4B Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_001264264.1  
    ENSEMBL proteins: 
     ENSP00000417895   ENSP00000303968   ENSP00000440982  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    PLEKH: Pleckstrin homology (PH) domain containing

    Selected InterPro protein domains (see all 7):
     IPR001936 RasGAP
     IPR008936 Rho_GTPase_activation_prot
     IPR001849 Pleckstrin_homology
     IPR011993 PH_like_dom
     IPR023152 RasGAP_CS

    Graphical View of Domain Structure for InterPro Entry C9J798

    ProtoNet protein and cluster: C9J798

    UniProtKB/Swiss-Prot: RAS4B_HUMAN, C9J798
    Similarity: Contains 1 Btk-type zinc finger
    Similarity: Contains 2 C2 domains
    Similarity: Contains 1 PH domain
    Similarity: Contains 1 Ras-GAP domain


    RASA4B for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: RAS4B_HUMAN, C9J798
    Function: Ca(2+)-dependent Ras GTPase-activating protein, that may play a role in the Ras-MAPK pathway (By
    similarity)

         Gene Ontology (GO): 3 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005096GTPase activator activity IEA--
    GO:0005515protein binding ----
    GO:0046872metal ion binding IEA--
         
    RASA4B for ontologies           About GeneDecksing


    Animal Models:
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    RAS4B_HUMAN, C9J798: Cytoplasm, cytosol (By similarity). Cell membrane; Peripheral membrane protein (By
    similarity)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    plasma membrane5
    cytosol3
    nucleus2
    mitochondrion1

    Gene Ontology (GO): 3 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622intracellular ----
    GO:0005829cytosol IEA--
    GO:0005886plasma membrane IEA--

    RASA4B for ontologies           About GeneDecksing


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    SuperPaths for RASA4B About    
    See pathways by source

    SuperPathContained pathways About
    1Ras signaling pathway
    Ras signaling pathway0.36

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways



    1 Kegg Pathway  (Kegg details for RASA4B):
        Ras signaling pathway


    RASA4B for pathways           About GeneDecksing

        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for RASA4B
    Interactions:

        Search GeneGlobe Interaction Network for RASA4B

    STRING Interaction Network Preview (showing 5 interactants - click image to see 10)

    Selected Interacting proteins for RASA4B (ENSP000004178954) via UniProtKB, MINT, STRING, and/or I2D (see all 10)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    PER1ENSP000003144204STRING: ENSP00000314420
    PER2ENSP000002546574STRING: ENSP00000254657
    PER3ENSP000003550314STRING: ENSP00000355031
    PLCE1ENSP000002607664STRING: ENSP00000260766
    PLCG1ENSP000002440074STRING: ENSP00000244007
    About this table

    Gene Ontology (GO): 3 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007165signal transduction ----
    GO:0035556intracellular signal transduction IEA--
    GO:0051056regulation of small GTPase mediated signal transduction IEA--

    RASA4B for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for RASA4B (RAS4B)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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    REFSEQ mRNAs for RASA4B gene: 
    NM_001277335.1  

    7 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000477184(uc011kkt.1) ENST00000488284(uc003uzr.1 uc003uzv.1)
    ENST00000465829(uc022ajh.1 uc010lia.1 uc003uzu.1 uc003uzt.1 uc010lib.1)
    ENST00000495352 ENST00000467351 ENST00000306682 ENST00000541662
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    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    RASA4B expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    RASA4B Expression
    About this image

    RASA4B Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    RASA4B Protein Expression
        Custom PCR Arrays for RASA4B
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    In Situ
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals.

    Orthologs for RASA4B gene from Selected species (see all 10)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves --
    Uncharacterized protein
    62(a)
    1 → many
    19(4168859-4175657) ENSGALG00000001876
    zebrafish
    (Danio rerio)
    Actinopterygii rasa46
    RAS p21 protein activator 4
    59(a)
    1 → many
    5(60976757-61084558) ENSDARG00000029372
    fruit fly
    (Drosophila melanogaster)
    Insecta Gap16
    GTPase-activating protein 1
    18(a)
    1 → many
    3L(9832193-9848385)
    worm
    (Caenorhabditis elegans)
    Secernentea gap-16
    Protein GAP-1 (gap-1) mRNA, complete cds
    22(a)
    1 → many
    X(2192504-2195348) WBGene00001515
            Species with no ortholog for RASA4B

    ENSEMBL Gene Tree for RASA4B (if available)
    TreeFam Gene Tree for RASA4B (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for RASA4B gene
    SYNGAP12  DAB2IP2  RASA42  RASA12  RASAL32  RASA22  RASAL22  RASA32  
    RASAL12  
    4 SIMAP similar genes for RASA4B using alignment to 3 protein entries:     RAS4B_HUMAN (see all proteins):
    RASA4    RASAL1    RASA3    RASA2

    RASA4B for paralogs           About GeneDecksing


    5 Pseudogenes.org Pseudogenes for RASA4B
    PGOHUM00000232671 PGOHUM00000260213 PGOHUM00000260277 PGOHUM00000232948 PGOHUM00000262011


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for RASA4B (see all 211)    About this table    
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 7 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs2018460241,2
    C--101492338(+) TGGAGA/GAACTC 4 -- int10--------
    rs773829051,2
    C--101492486(+) CTCTGG/ACCTGG 4 -- int11Minor allele frequency- A:0.50NA 2
    rs1458622511,2
    C--101493156(+) ACTCAC/GAGAGG 4 -- int10--------
    rs2008401211,2
    C--101493372(+) TTTAAA/TCCTCA 4 -- int10--------
    rs3709227781,2
    C--101493615(+) CTCCAC/TTTGGC 4 -- int10--------
    rs1392241191,2
    C--101496827(+) TGTCG-/CTCTCTC 4 -- int10--------
    rs7463171,2
    C,A--101496844(-) ACAACC/ACTGAG 4 -- int11Minor allele frequency- A:0.50NA 2
    rs2005085771,2
    C--101496877(+) TAGCAC/TGCAAC 4 -- int10--------
    rs7463161,2
    C,F,A--101496905(-) AGTCCG/ATGGAG 8 /M /V mis12Minor allele frequency- A:0.01NA EU 305
    rs3739271771,2
    C--101497803(+) TGGGGA/CGGCTT 4 -- int10--------

    HapMap Linkage Disequilibrium report for RASA4B (102122892 - 102158228 bp)

    Structural Variations
          Database of Genomic Variants (DGV) variations for RASA4B: --
    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing RASA4B
    DNA2.0 Custom Variant and Variant Library Synthesis for RASA4B

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for RASA4B gene integrated from 10 sources:
    (articles sorted by number of sources associating them with RASA4B)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The DNA sequence of human chromosome 7. (PubMed id 12853948)1, 2 Hillier L.W.... Wilson R.K. (Nature 2003)
    2. Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass. (PubMed id 23000965)1 Povlsen L.K....Choudhary C. (Nat. Cell Biol. 2012)
    3. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (amp 2011)
    4. CAPRI regulates Ca(2+)-dependent inactivation of the Ras-MAPK pathway. (PubMed id 11448776)1 Lockyer P.J.... Cullen P.J. (Curr. Biol. 2001)
    5. Toward a complete human genome sequence. (PubMed id 9847074)1 Sulston J.E. and Waterston R. (Genome Res. 1998)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 100271927 HGNC: 35202 Ensembl:ENSG00000170667 euGenes: HUgn100271927 ECgene: RASA4B Kegg: 100271927
    H-InvDB: RASA4B

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for RASA4B Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for RASA4B gene:
    Search GeneIP for patents involving RASA4B

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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