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Aliases & Descriptions for RARB
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases HAP 1 , 2 , 3 , 5 NR1B2 1 , 2 , 3 RAR-beta 3 RAR-epsilon 2 , 3 RRB2 1 , 2
Descriptions HBV-activated protein 2 , 3 Nuclear receptor subfamily 1 group B member 2 3 hepatitis B virus activated protein 2 retinoic acid receptor beta 2 2 retinoic acid receptor beta 4 2 retinoic acid receptor beta 5 2 retinoic acid receptor, beta 2 retinoic acid receptor, beta polypeptide 2
Search outside databases for aliases for RARB genePrevious GC identifers: GC03P025167 GC03P025066 GC03P025191 GC03P025192 GC03P025444
Summaries for RARB (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for RARB : This gene encodes retinoic acid receptor beta, a member of the thyroid-steroid hormone receptorsuperfamily of nuclear transcriptional regulators. This receptor localizes to the cytoplasm and tosubnuclear compartments. It binds retinoic acid, the biologically active form of vitamin A whichmediates cellular signalling in embryonic morphogenesis, cell growth and differentiation. It isthought that this protein limits growth of many cell types by regulating gene expression. The genewas first identified in a hepatocellular carcinoma where it flanks a hepatitis B virus integrationsite. The gene expresses at least two transcript variants; one additional transcript has beendescribed, but its full length nature has not been determined. [provided by RefSeq] UniProtKB/Swiss-Prot: RARB_HUMAN, P10826 Function : This is a receptor for retinoic acid. This metabolite has profound effects on vertebratedevelopment. Retinoic acid is a morphogen and is a powerful teratogen. This receptor controls cellfunction by directly regulating gene expression
Gene Wiki entry for RARB (Retinoic_acid_receptor_beta)
Genomic Location for RARB
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the RARB gene Entrez Gene cytogenetic band: 3p24 Ensembl cytogenetic band: 3p24.2 HGNC cytogenetic band: 3p24 RARB Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 3 GeneLoc Exon Structure
GeneLoc location for GC03P025194:
(about GC identifiers )
Start:
25,190,893 bp from pter
End:
25,614,424 bp from pter
Size:
423,532 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000003.10 NT_022517.17 Proteins for RARB
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: RARB_HUMAN, P10826 (See
protein sequence )Recommended Name: Retinoic acid receptor beta Size : 455 amino acids; 50489 Da
Subcellular location : Isoform Beta-1: Nucleus
Subcellular location : Isoform Beta-2: Nucleus
Subcellular location : Isoform Beta-4: Cytoplasm
PDB structure from and Proteopedia : 1HRA (3D)
 1XAP (3D)
 
Secondary accessions : P12891 Q00989 Q15298 Q9UN48Alternative splicing : 4 isoforms : P10826-1 P10826-2 P10826-4 P10826-3
REFSEQ proteins (2 alternative transcripts):
NP_000956.2 NP_057236.1 ENSEMBL proteins: ENSP00000332296 ENSP00000373282 ENSP00000385865 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: RARB 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for RARB: Assays for RARB:
Protein
Domains/ Families for RARB(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P10826 ProtoNet protein and cluster: P10826
2 Blocks protein families : IPB001723 Steroid hormone receptor signature IPB003078 Retinoic acid receptor (1B nuclear receptor) signature UniProtKB/Swiss-Prot: RARB_HUMAN, P10826 Domain : Composed of three domains: a modulating N-terminal domain, a DNA-binding domain and aC-terminal steroid-binding domain Similarity : Belongs to the nuclear hormone receptor family. NR1 subfamilySimilarity : Contains 1 nuclear receptor DNA-binding domain
Gene Function for RARB
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_000965 Applied Biosystems Silencer ® siRNAs for RARB Sigma-Aldrich siRNA and siRNA Panels for RARB Sigma-Aldrich shRNA Panels and shRNA for RARB Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000965                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000965                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_000965  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000965 UniProtKB/Swiss-Prot: RARB_HUMAN, P10826 Function : This is a receptor for retinoic acid. This metabolite has profound effects on vertebratedevelopment. Retinoic acid is a morphogen and is a powerful teratogen. This receptor controls cellfunction by directly regulating gene expression
Genatlas biochemistry entry for RARB :retinoic acid receptor binding and activated by both all-trans (T-RA) and its 9-cis isomer(9-cis-RA) retinoic acids,beta subunit ,steroid/thyroid hormone receptor superfamily
15/21 MGI mutant phenotypes (inferred from 5 alleles ) (MGI details for Rarb) (see all 21
):5/7 Gene Ontology (GO) molecular function terms (links to tree view) (see all 7
):
About this table
Pathways & Interactions for RARB
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5 Sigma-Aldrich "Your Favorite Gene" Pathways for RARB (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for RARB 5/47 Interacting proteins for RARB (P10826 2 ENSP00000373282 3 ) via UniProtKB, MINT, and/or STRING (see all 47
)About this table 5/11 Gene Ontology (GO) biological process terms (links to tree view) (see all 11
):
GO ID Qualified GO term Evidence PubMed IDs GO:0000122 negative regulation of transcription from RNA polymerase II promoter
IEA -- GO:0001657 ureteric bud development
IEA -- GO:0006350 transcription
IEA -- GO:0006355 regulation of transcription, DNA-dependent
IEA -- GO:0007165 signal transduction
TAS 2833708
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Drugs & Compounds for RARB (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for RARB
Compounds for RARB available from Tocris Bioscience Compound Action
CAS
number Fenretinide Synthetic retinoid. Potent anti-cancer agent [65646-68-6] AM 580 Retinoic acid agonist [102121-60-8] AC 55649 Selective RARbeta2 agonist [59662-49-6] LE 135 Selective RARbeta antagonist [155877-83-1] Adapalene RARbeta and RARgamma agonist [106685-40-9]
About this table 10/26 Novoseek chemical compound relationships for RARB gene (see all 26
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
ch 55
86.91
4
7556191 (1), 2154975 (1), 10747926 (1), 11769677 (1)
ttnn
79.58
1
7812950 (1)
cd 2019
79.58
4
8216300 (2), 10374844 (1), 11726401 (1)
am80
76.40
1
2154975 (1)
sr 11217
74.87
1
7812950 (1)
sr 11237
73.16
6
12839938 (4), 11979430 (1)
ttab
70.52
1
7812950 (1)
n-4-methoxyphenylretinamide
61.54
1
8640761 (1)
o6-methylguanine
46.29
10
16203797 (1), 14633667 (1), 12730870 (1), 17182830 (1) (see all 6 )
steroid
23.45
2
9368510 (1), 15234273 (1)
About this table
Transcripts for RARB(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
OriGene , Expression Assays from Applied Biosystems )About This Section
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_000965 Sigma-Aldrich siRNA and siRNA Panels for RARB Sigma-Aldrich shRNA Panels and shRNA for RARB Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_000965 NM_016152
REFSEQ mRNAs for RARB gene (2 alternative transcripts): NM_000965.3 NM_016152.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000965 NM_016152
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000965                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000965                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_000965  
Additional cDNA sequence: AB307688.1 AF157483.1 AK292032.1 AK299756.1 AY501390.1 BC030234.1 BC050415.2 BC060794.1 CR536558.1 CR621137.1 DQ083391.1 M62303.1 X07282.1 Y00291.1
6 DOTS entries : DT.100748508 DT.414721 DT.120925299 DT.120925216 DT.100679239 DT.91797951
24/91 AceView cDNA sequences (see all 91
):CA392074 AA147673 BM727498 CD014021 N66800 CD014020 BU740742 AA419238 BX390267 CR621137 CD014022 BM722961 BF062606 CR536558 BC030234 AL547687 CA390471 BM719146 AA917936 AF157483 CD679225 CA447720 BP873248 BC069735
highest scoring ESTs for RARB :Y00291 AA147673 AA419164 AA419238 AA424088 AA917936 AI004107 AI168535 AI369519 AI767065
Unigene Cluster for RARB: Retinoic acid receptor, beta Hs.654490 [show with all ESTs ] Unigene Representative Sequence: NM_000965 GeneLoc Exon Structure 3 Ensembl transcripts including schematic representations : ENST00000330688
ENST00000383772
ENST00000404969
Expression for RARB
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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RARB expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for RARB 1 / 2 / 3
11 probe-sets matching RARB gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GAGTCTCCTGSOURCE GeneReport for Unigene cluster: Hs.654490 Expression variation in blood from EXPOLDB for RARB
Orthologs for RARB
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for RARB gene from 5/9 species (see all 9
)
About this table Species with no ortholog for RARB ENSEMBL Gene Tree for RARB Paralogs for RARB (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for RARB gene RARG 2 RARA 2
SNPs/Variants for RARB (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for RARB (up to first 250kb)
Disorders & Mutations for RARB
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 180220 10/83 Novoseek disease relationships for RARB gene (see all 83
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
carcinoma embryonal
71.24
5
9140065 (1), 2162058 (1), 1379266 (1), 7731708 (1) (see all 5 )
teratocarcinoma
70.75
5
1323569 (1), 9419418 (1), 8353043 (1), 9457077 (1) (see all 5 )
premalignant
68.14
26
11848477 (5), 7723796 (3), 15010078 (2), 15173091 (1) (see all 13 )
leukemia promyelocytic acute
62.33
4
8801177 (1), 15189119 (1), 19317219 (1)
cancer lung
56.82
72
9426695 (4), 1717924 (4), 7923214 (3), 16841329 (2) (see all 32 )
tumors
55.89
192
8180126 (3), 12469153 (3), 14715861 (3), 17998817 (3) (see all 93 )
carcinoma squamous cell
55.33
40
11173543 (4), 9426070 (3), 12839965 (2), 10416619 (2) (see all 24 )
hnscc
55.02
26
15959780 (5), 8012985 (3), 11687961 (2), 10416619 (2) (see all 7 )
squamous cell lung cancer
54.65
1
8381540 (1)
cancer
53.49
73
10629053 (5), 12516107 (3), 8657191 (3), 9255592 (2) (see all 47 )
About this table Genetic Association Database: RARB Human Genome Epidemiology Navigator: RARB (8 documents) Tumor Gene Database : RARB
Medical News for RARB (Possibly Related Articles in
Doctor's Guide )
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--
Publications for RARB (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/566 PubMed articles for RARB gene (see all 566
): Elevated retinoic acid receptor beta(4) protein in human breast tumor cells with nuclear and cytoplasmic localization. (PubMed id 10411930) 1, 3, 4 Sommer K.M.... Swisshelm K. (1999) Fetal isoform of human retinoic acid receptor beta expressed in small cell lung cancer lines. (PubMed id 8275470) 1, 3, 4 Houle B.... Bradley W.E. (1994) Structural variants in the retinoid receptor genes in patients with schizophrenia and other psychiatric diseases. (PubMed id 15635645) 3, 6 Feng J....Sommer S.S. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) The solution structure of the human retinoic acid receptor-beta DNA- binding domain. (PubMed id 8383553) 3, 4 Knegtel R.M.A.... Kaptein R. (1993) Homo- and heteronuclear NMR studies of the human retinoic acid receptor beta DNA-binding domain: sequential assignments and identification of secondary structure elements. (PubMed id 1321662) 3, 4 Kathira M.... Kaptein R. (1992) Mouse and human retinoic acid receptor beta 2 promoters: sequence comparison and localization of retinoic acid responsiveness. (PubMed id 1663808) 3, 4 Shen S.... Kruijer W. (1991) Hepatitis B virus as an insertional mutagene in a human hepatocellular carcinoma. (PubMed id 2170809) 3, 4 Dejean A. and de The H. (1990) Identification of a second human retinoic acid receptor. (PubMed id 2833708) 3, 4 Brand N.... Dejean A. (1988) A new retinoic acid receptor identified from a hepatocellular carcinoma. (PubMed id 2836738) 3, 4 Benbrook D.... Pfahl M. (1988)
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Genome Databases showing RARB
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing RARB
(According to HUGE )
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Specialized Databases showing RARB (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for RARB (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for RARB:
Tocris compounds for RARB
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009