Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

RAPSN Gene

protein-coding   GIFtS: 59
GCID: GC11M047459

receptor-associated protein of the synapse

(Previous names: receptor-associated protein of the synapse, 43kD )
 Explore 16 diseases affiliated with
RAPSN via our new
 Human Malady Compendium 
Biological research products
for RAPSN
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Receptor-Associated Protein Of The Synapse1 2     CMS1E1 5
RNF2051 2 3     Receptor-Associated Protein Of The Synapse, 43kD1
43 KDa Postsynaptic Protein2 3     43 KDa Receptor-Associated Protein Of The Synapse2
Acetylcholine Receptor-Associated 43 KDa Protein2 3     RAPSYN2
RING Finger Protein 2052 3     RAPsyn3
CMS1D1 5     

External Ids:    HGNC: 98631   Entrez Gene: 59132   Ensembl: ENSG000001659177   OMIM: 6015925   UniProtKB: Q137023   

Export aliases for RAPSN gene to outside databases

Previous GC identifers: GC11M049396 GC11M048337 GC11M047490 GC11M047423 GC11M047415 GC11M047159


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for RAPSN:
This gene encodes a member of a family of proteins that are receptor associated proteins of the synapse. The encoded
protein contains a conserved cAMP-dependent protein kinase phosphorylation site, and plays a critical role in
clustering and anchoring nicotinic acetylcholine receptors at synaptic sites by linking the receptors to the
underlying postsynaptic cytoskeleton, possibly by direct association with actin or spectrin. Mutations in this gene
may play a role in postsynaptic congenital myasthenic syndromes. Alternatively spliced transcript variants encoding
multiple isoforms have been observed for this gene. (provided by RefSeq, Apr 2011)

UniProtKB/Swiss-Prot: RAPSN_HUMAN, Q13702
Function: Thought to play some role in anchoring or stabilizing the nicotinic acetylcholine receptor at synaptic sites.
It may link the receptor to the underlying postsynaptic cytoskeleton, possibly by direct association with actin or
spectrin

Gene Wiki entry for RAPSN


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000011.9  NC_018922.1  NT_009237.18  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the RAPSN gene promoter:
         Sox5   AML1a   MyoD   AP-4   FOXL1   GATA-2   SRY   FOXJ2 (long isoform)   FOXJ2   RSRFC4   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidRAPSN promoter sequence
   Search SABiosciences Chromatin IP Primers for RAPSN

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RAPSN


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11p11.2   Ensembl cytogenetic band:  11p11.2   HGNC cytogenetic band: 11p11.2

RAPSN Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RAPSN gene location

GeneLoc information about chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11M047459:  view genomic region     (about GC identifiers)

Start:
47,459,308 bp from pter      End:
47,470,730 bp from pter
Size:
11,423 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: RAPSN_HUMAN, Q13702 (See protein sequence)
Recommended Name: 43 kDa receptor-associated protein of the synapse  
Size: 412 amino acids; 46328 Da
Subcellular location: Cell membrane; Peripheral membrane protein; Cytoplasmic side. Cell junction, synapse,
postsynaptic cell membrane; Peripheral membrane protein; Cytoplasmic side. Cytoplasm, cytoskeleton. Note=Cytoplasmic
surface of postsynaptic membranes
Secondary accessions: Q8TDF3 Q9BTD9
Alternative splicing: 2 isoforms:  Q13702-1   Q13702-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for RAPSN: NX_Q13702

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q13702

  • RAPSN Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (2 alternative transcripts): 
    NP_005046.2  NP_116034.2  

    ENSEMBL proteins: 
     ENSP00000298854   ENSP00000298853   ENSP00000435551   ENSP00000431732  

    Human Recombinant Protein Products: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    OriGene Purified Protein: RAPSN
    OriGene Protein Over-expression Lysate (see all 2): RAPSN
    OriGene Custom Protein Services for RAPSN 
    GenScript Custom Purified and Recombinant Proteins Services for RAPSN
    Novus Biologicals RAPSN Proteins
    Novus Biologicals RAPSN Lysates
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for RAPSN

    Gene Ontology (GO): 5/7 cellular component terms (GO ID links to tree view) (see all 7):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005737cytoplasm IDA--
    GO:0005794Golgi apparatus IEA--
    GO:0005856cytoskeleton IEA--
    GO:0005886plasma membrane IDA--
    GO:0030054cell junction IEA--


    RAPSN for ontologies           About GeneDecksing



    RAPSN Antibody Products: 
    EMD Millipore Mono- and Polyclonal Antibodies for the study of RAPSN
    Browse R&D Systems for Antibodies
    OriGene Antibodies: RAPSN
    OriGene Custom Antibody Services for RAPSN 
    GenScript Custom Superior Antibodies Services for RAPSN
    Novus Biologicals RAPSN Antibodies
    Abcam antibodies for RAPSN 
    Uscn Antibodies for RAPSN
    ThermoFisher Antibodies for RAPSN

    Assay Products for RAPSN: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for RAPSN
    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for RAPSN


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    RAPSN for domains           About GeneDecksing

    5/9 InterPro domains/families (see all 9):
     IPR018293 Postsynaptic_CS
     IPR001237 Postsynaptic
     IPR011990 TPR-like_helical
     IPR001841 Znf_RING
     IPR013083 Znf_RING/FYVE/PHD

    Graphical View of Domain Structure for InterPro Entry Q13702

    ProtoNet protein and cluster: Q13702

    3 Blocks protein families:
    IPB001237 43 kDa postsynaptic protein
    IPB001841 Zn-finger
    IPB011595 TPR-related region


    UniProtKB/Swiss-Prot: RAPSN_HUMAN, Q13702
    Domain: A cysteine-rich region homologous to part of the regulatory domain of protein kinase C may be important in
    interactions of this protein with the lipid bilayer
    Similarity: Belongs to the RAPsyn family
    Similarity: Contains 1 RING-type zinc finger
    Similarity: Contains 7 TPR repeats


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: RAPSN_HUMAN, Q13702
    Function: Thought to play some role in anchoring or stabilizing the nicotinic acetylcholine receptor at synaptic sites.
    It may link the receptor to the underlying postsynaptic cytoskeleton, possibly by direct association with actin or
    spectrin

         Genatlas biochemistry entry for RAPSN:
    acetylcholine receptor associated protein,43kDa,rapsyn,involved in the clustering and anchoring the receptor in the
    membrane

    miRNA
    Products:
        
    Browse 3'-UTR reporter clones for miRNA target validation
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat RAPSN
    5 QIAGEN miScript miRNA Assays for microRNAs that regulate RAPSN:
    hsa-miR-1276 hsa-miR-520d-5p hsa-miR-548k hsa-miR-524-5p hsa-miR-583
    SwitchGear 3'UTR luciferase reporter plasmidRAPSN 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for RAPSN (see all 7)
    OriGene shRNA RFP: RAPSN
    OriGene siRNA: RAPSN
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RAPSN

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for RAPSN

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for RAPSN (see all 4)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RAPSN (see all 2)
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector (see all 2): RAPSN (NM_032645)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for RAPSN
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RAPSN 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for RAPSN
    Search LifeMap BioReagents cell lines for RAPSN

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RAPSN

    Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008270zinc ion binding IEA--
    GO:0033130acetylcholine receptor binding IDA18420419
    GO:0035255ionotropic glutamate receptor binding IEA--


    RAPSN for ontologies           About GeneDecksing


    Animal Models:
         Mouse knock-out Rapsntm1Jrs for RAPSN
         4 MGI mutant phenotypes (inferred from 1 allele(MGI details for Rapsn):
     mortality/aging  muscle  nervous system  respiratory system 

    RAPSN for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Agrin Interactions at Neuromuscular Junction
    Agrin Interactions at Neuromuscular Junction1.00

    1 Downloadable PowerPoint Slide of QIAGEN Pathway Central Maps for RAPSN
        Agrin Interactions at Neuromuscular Junction


    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for RAPSN

    STRING Interaction Network Preview (showing 5 interactants - click image to see 8)

    5/27 Interacting proteins for RAPSN (Q137023 ENSP000002988544) via UniProtKB, MINT, STRING, and/or I2D (see all 27)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    KHDRBS1Q076663, ENSP000003138294I2D: score=2 STRING: ENSP00000313829
    DAG1Q141183, ENSP000003124354I2D: score=1 STRING: ENSP00000312435
    CHRNB1P112303, ENSP000003042904I2D: score=1 STRING: ENSP00000304290
    MUSKO151463, ENSP000003635714I2D: score=1 STRING: ENSP00000363571
    GRB2P629933, ENSP000003390074I2D: score=1 STRING: ENSP00000339007
    About this table

    Gene Ontology (GO): 3 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007268synaptic transmission TAS8812503
    GO:0007271synaptic transmission, cholinergic IGI18420419
    GO:0043525positive regulation of neuron apoptotic process IEA--


    RAPSN for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    RAPSN for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for RAPSN
    10 Novoseek chemical compound relationships for RAPSN gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    acetylcholine 82.5 59 14659409 (4), 15145336 (3), 11168526 (2), 12486121 (2) (see all 37)
    tyrosine 49.3 29 18436384 (6), 8918833 (4), 8630253 (2), 11278328 (1) (see all 15)
    phosphotyrosine 47.1 4 8730851 (2), 9647653 (1), 8918833 (1)
    choline 37.6 3 15034283 (1), 15367858 (1), 15907919 (1)
    herbimycin a 36 1 10400682 (1)
    sodium 8.4 5 9143560 (1), 15034283 (1), 15367858 (1), 9687350 (1) (see all 5)
    lipid 0 2 16932745 (1), 16672658 (1)
    calcium 0 2 18420419 (1)
    zinc 0 2 10698970 (1), 16675143 (1)
    potassium 0 1 10588389 (1)

    Search CenterWatch for drugs/clinical trials and news about RAPSN 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for RAPSN gene (2 alternative transcripts): 
    NM_005055.4  NM_032645.4  

    Unigene Cluster for RAPSN:

    Receptor-associated protein of the synapse
    Hs.81218  [show with all ESTs]
    Unigene Representative Sequence: NM_005055
    5 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000298854(uc001nfi.2 uc001nfj.2) ENST00000528356 ENST00000352508
    ENST00000524487 ENST00000529341(uc009yls.1)

    miRNA
    Products:
         
    Browse 3'-UTR reporter clones for miRNA target validation
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat RAPSN
    5 QIAGEN miScript miRNA Assays for microRNAs that regulate RAPSN:
    hsa-miR-1276 hsa-miR-520d-5p hsa-miR-548k hsa-miR-524-5p hsa-miR-583
    SwitchGear 3'UTR luciferase reporter plasmidRAPSN 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for RAPSN (see all 7)
    OriGene shRNA RFP: RAPSN
    OriGene siRNA: RAPSN
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RAPSN
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for RAPSN (see all 4)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RAPSN (see all 2)
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector (see all 2): RAPSN (NM_032645)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for RAPSN
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RAPSN 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for RAPSN
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat RAPSN
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RAPSN
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RAPSN

    Additional cDNA sequence: 

    AF449218.1 AK310002.1 BC004196.2 Z33905.1 

    2 DOTS entries:

    DT.92417907  DT.100000209 

    24/26 AceView cDNA sequences (see all 26):

    BM678213 NM_005055 NM_032645 BM724745 BM725200 AI269163 BU689638 BX108953 
    BE299731 BX392882 BQ576358 BU741397 BC004196 AF449218 BF304907 BF305136 
    BE295236 Z33905 AA449902 AW573099 AA449846 AA214254 AI282041 AA442720 

    GeneLoc Exon Structure

    2 Alternative Splicing Database (ASD) splice patterns (SP) for RAPSN    About this scheme

    ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b
    SP1:                                                            
    SP2:                                -     -                     


    ECgene alternative splicing isoforms for RAPSN

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    RAPSN expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: CCAGAGGCCC

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See RAPSN Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for RAPSN

    SOURCE GeneReport for Unigene cluster: Hs.81218
        SABiosciences Custom PCR Arrays for RAPSN
    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for RAPSN
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat RAPSN
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RAPSN
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RAPSN
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RAPSN

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for RAPSN gene from 7/15 species (see all 15)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Rapsn1 , 5 receptor-associated protein of the synapse1, 5 89.32(n)1
    96.12(a)1
      2 (50.44 cM)5
    194001  NM_009023.31  NP_033049.21 
     910356205 
    chicken
    (Gallus gallus)
    Aves RAPSN1 receptor-associated protein of the synapse 77.02(n)
    83.25(a)
      395986  NM_205097.1  NP_990428.1 
    lizard
    (Anolis carolinensis)
    Reptilia RAPSN6
    --
    83(a)
    1 ↔ 1
    1(44188244-44207188)
    African clawed frog
    (Xenopus laevis)
    Amphibia AF118817.12   -- 81.14(n)    AF118817.1 
    zebrafish
    (Danio rerio)
    Actinopterygii rapsn2 receptor-associated protein of the synapse, 43kD 75.64(n)   352942  AB070208.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG19091 , 3 nicotinic acetylcholine receptor-associated
    protein3
    CG19091
    30(a)3
    43.06(n)1
    31.47(a)1
      102C23
    438001  NM_143671.21  NP_651928.11 
    worm
    (Caenorhabditis elegans)
    Secernentea rpy-11 Protein RPY-1 42.06(n)
    33.17(a)
      174105  NM_062964.3  NP_495365.1 


    ENSEMBL Gene Tree for RAPSN (if available)
    TreeFam Gene Tree for RAPSN (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/271 NCBI SNPs in RAPSN are shown (see all 271    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 11 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1048943001,2
    Cpathogenic54061842(-) GGGGCC/TCCAGC 4 P L mis10--------
    rs1219092541,2
    Cpathogenic54061934(-) TCCGCG/ATGCTG 4 /M /V mis11Minor allele frequency- A:0.00EU 1113
    rs1048942991,2
    C,F,pathogenic54062687(-) CTGAAC/ACTGGC 4 /K /N mis11Minor allele frequency- A:0.00NA 4534
    rs1048942941,2
    Cpathogenic54062913(-) AGTGCC/TGCGTG 4 R C mis10--------
    rs1048942931,2
    Cpathogenic54069088(-) CCGCCC/TGGGGC 3 P L int1 mis10--------
    rs734597511,2
    C,--47159086(+) ACCAGG/TTACAA 2 -- ut312Minor allele frequency- T:0.04WA 120
    rs456171441,2
    C,F,--47159236(-) CTGCAC/TGCCAG 2 -- ut315Minor allele frequency- T:0.13NA MN WA 1162
    rs774108791,2
    F--47159323(+) GAGCGG/CCGGCA 4 /R syn11Minor allele frequency- C:0.33NA 6
    rs71048001,2
    C,F,--47162203(+) gatgtG/Aagcca 2 -- int16Minor allele frequency- A:0.09NA WA EA 364
    rs107166801,2
    C,F,--47162606(+) GGGTA-/GGGGGG 1 -- int15Minor allele frequency- G:0.40NA CSA 10

    HapMap Linkage Disequilibrium report for RAPSN (47459308 - 47470730 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for RAPSN: --
    Human Gene Mutation Database (HGMD): RAPSN

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing RAPSN
    DNA2.0 Custom Variant and Variant Library Synthesis for RAPSN

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    RAPSN for disorders           About GeneDecksing

    OMIM gene information: 601592   
    OMIM disorders: 608931  208150  
    UniProtKB/Swiss-Prot: RAPSN_HUMAN, Q13702
  • Defects in RAPSN are a cause of congenital myasthenic syndrome with acetylcholine receptor deficiency
  • (CMS-ACHRD) [MIM:608931]. A postsynaptic congenital myasthenic syndrome. Congenital myasthenic syndromes (CMS) are
    inherited disorders of neuromuscular transmission that stem from mutations in presynaptic, synaptic, or postsynaptic
    proteins
  • Defects in RAPSN are the cause of fetal akinesia deformation sequence (FADS) [MIM:208150]; also known as
  • Pena-Shokeir syndrome type 1 or fetal akinesia sequence or arthrogryposis multiplex congenita with pulmonary
    hypoplasia. FADS is a rare condition characterized by decreased intrauterine fetal movement, congenital limb
    contractures, pulmonary hypoplasia, polyhydramnios and craniofacial abnormalities

    16 diseases for RAPSN:    About MalaCards
    myasthenic syndrome, congenital, associated with facial dysmorphism and acetylcholine receptor deficiency    congenital myasthenic syndrome    myasthenic syndrome    fetal akinesia deformation sequence
    arthrogryposis multiplex congenita pulmonary hypoplasia    lambert-eaton myasthenic syndrome    myasthenia gravis    craniofacial abnormalities
    arthrogryposis    cystic lymphangioma    myasthenia    pterygium
    polyhydramnios    lymphangioma    cholesterol    neuronitis

    2 diseases from the University of Copenhagen DISEASES database for RAPSN:
    Myopathy     Neuropathy

    4 Novoseek disease relationships for RAPSN gene    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    myasthenic syndromes congenital 95.3 19 16931511 (3), 15482960 (2), 15328566 (2), 17594401 (1) (see all 13)
    postsynaptic congenital myasthenic syndromes 94.7 4 12929188 (1), 15252722 (1), 19620612 (1), 15328566 (1)
    myasthenia gravis 66.7 8 16150851 (3), 17255332 (3), 12020474 (1)
    arthrogryposis 59 1 15328566 (1)

    GeneTests: RAPSN
    Congenital Myasthenic Syndromes

    Human Genome Epidemiology (HuGE) Navigator: RAPSN (1 document)

    Export disorders for RAPSN gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for RAPSN gene, integrated from 9 sources (see all 127):
    (articles sorted by number of sources associating them with RAPSN)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Cloning of cDNA encoding human rapsyn and mapping of the RAPSN gene locus to chromosome 11p11.2-p11.1. (PubMed id 8812503)1, 2, 3, 9 Buckel A.... Vincent A. (1996)
    2. Impaired receptor clustering in congenital myasthenic syndrome with novel RAPSN mutations. (PubMed id 16931511)1, 2, 9 Mueller J.S.... Lochmueller H. (2006)
    3. Mutation analysis of CHRNA1, CHRNB1, CHRND, and RAPSN genes in multiple pterygium syndrome/fetal akinesia patients. (PubMed id 18179903)1, 2, 9 Vogt J.... Maher E.R. (2008)
    4. Rapsyn mutations in humans cause endplate acetylcholine-receptor deficiency and myasthenic syndrome. (PubMed id 11791205)1, 2, 9 Ohno K.... Milone M. (2002)
    5. Congenital myasthenic syndrome due to rapsyn deficiency: three cases with arthrogryposis and bulbar symptoms. (PubMed id 15328566)1, 2, 9 Ioos C....Estournet-Mathiaud B. (2004)
    6. Identification of pathogenic mutations in the human rapsyn gene. (PubMed id 12730725)1, 2, 9 Dunne V. and Maselli R.A. (2003)
    7. Rapsyn N88K is a frequent cause of congenital myasthenic syndromes in European patients. (PubMed id 12796535)1, 2, 9 Mueller J.S.... Abicht A. (2003)
    8. Rapsyn mutations in myasthenic syndrome due to impaired receptor clustering. (PubMed id 12929188)1, 2, 9 Maselli R.A.... Wollmann R.L. (2003)
    9. Novel truncating RAPSN mutations causing congenital myasthenic syndrome responsive to 3,4-diaminopyridine. (PubMed id 15036330)1, 2 Banwell B.L.... Engel A.G. (2004)
    10. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 5913 HGNC: 9863 AceView: RAPSN Ensembl:ENSG00000165917 euGenes: HUgn5913
    ECgene: RAPSN H-InvDB: RAPSN

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for RAPSN Pharmacogenomics, SNPs, Pathways
    GeneReviewshttp://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/RAPSN

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for RAPSN gene:
    Search GeneIP for patents involving RAPSN

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
    In Situ Hybridization Assays from
    Advanced Cell Diagnostics
    About This Section

     EMD Millipore Mono- and Polyclonal Antibodies for the study of RAPSN
     Browse Purified and Recombinant Proteins at EMD Millipore
     Browse Small Molecules at EMD Millipore
     Browse Kits and Assays available from EMD Millipore
     Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
     Browse for Gene Knock-down Tools from EMD Millipore
     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Browse Antibodies   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Browse Recombinant/Natural Proteins  
     OriGene Antibodies for RAPSN   OriGene shRNA RFP for RAPSN  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for RAPSN   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for RAPSN  
     OriGene Protein Over-expression Lysate for RAPSN   Browse OriGene Fluorogenic Cell Assay Kits  
     OriGene siRNA for RAPSN   Browse 3'-UTR reporter clones for miRNA target validation  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RAPSN   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for RAPSN  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     OriGene Purified Protein for RAPSN   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for RAPSN   OriGene Custom Protein Services for RAPSN  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat RAPSN
     QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing RAPSN
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RAPSN
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RAPSN
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RAPSN
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RAPSN
     GenScript Custom Purified and Recombinant Proteins Services for RAPSN GenScript cDNA clones with any tag delivered in your preferred vector for RAPSN
     GenScript Custom Assay Services for RAPSN GenScript Custom Superior Antibodies Services for RAPSN
     GenScript Custom overexpressing Cell Line Services for RAPSN CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Search for Antibodies & Assays

     Regulatory tfbs in RAPSN promoter
     Search Chromatin IP Primers for RAPSN
     RT2 qPCR Primer Assay in human, mouse, rat RAPSN
     GNC Network for RAPSN
     SABiosciences PCR Arrays including human, mouse, rat RAPSN
     Search Tocris compounds for RAPSN
     Browse Sino Biological Proteins and Antibodies
     Browse Sino Biological cDNA Clones
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     RAPSN antibodies
     RAPSN proteins
     RAPSN lysates
     Antibodies for RAPSN
     See all of Abcam's Antibodies, Kits and Proteins for RAPSN
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Browse ProSpec Recombinant Proteins




     RAPSN Proteins, Antibodies, CLIAs, and ELISAs
     Search LifeMap BioReagents cell lines for RAPSN
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RAPSN
     SwitchGear 3'UTR luciferase reporter plasmids for RAPSN
     SwitchGear Promoter luciferase reporter plasmids for RAPSN
     ThermoFisher Antibodies for RAPSN
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RAPSN
           
    GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      RAPSN gene at Home site.
    hostname: 356977-web1.xennexinc.com index build: 100 solr: 1.4