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Aliases for RAPSN Gene

Aliases for RAPSN Gene

  • Receptor Associated Protein Of The Synapse 2 3 5
  • Rapsyn 2 3 4
  • RING Finger Protein 205 3 4
  • RNF205 3 4
  • 43 KDa Receptor-Associated Protein Of The Synapse 3
  • Receptor-Associated Protein Of The Synapse, 43kD 2
  • Acetylcholine Receptor-Associated 43 Kda Protein 3
  • Acetylcholine Receptor-Associated 43 KDa Protein 4
  • 43 Kda Postsynaptic Protein 3
  • 43 KDa Postsynaptic Protein 4
  • CMS4C 3
  • CMS11 3
  • FADS 3

External Ids for RAPSN Gene

Previous GeneCards Identifiers for RAPSN Gene

  • GC11M049396
  • GC11M048337
  • GC11M047490
  • GC11M047423
  • GC11M047415
  • GC11M047459
  • GC11M047159
  • GC11M047572
  • GC11M047950
  • GC11M050801
  • GC11M051596
  • GC11M052258

Summaries for RAPSN Gene

Entrez Gene Summary for RAPSN Gene

  • This gene encodes a member of a family of proteins that are receptor associated proteins of the synapse. The encoded protein contains a conserved cAMP-dependent protein kinase phosphorylation site, and plays a critical role in clustering and anchoring nicotinic acetylcholine receptors at synaptic sites by linking the receptors to the underlying postsynaptic cytoskeleton, possibly by direct association with actin or spectrin. Mutations in this gene may play a role in postsynaptic congenital myasthenic syndromes. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Apr 2011]

GeneCards Summary for RAPSN Gene

RAPSN (Receptor Associated Protein Of The Synapse) is a Protein Coding gene. Diseases associated with RAPSN include Fetal Akinesia Deformation Sequence and Myasthenic Syndrome, Congenital, 11, Associated With Acetylcholine Receptor Deficiency. Among its related pathways are Agrin Interactions at Neuromuscular Junction. GO annotations related to this gene include ionotropic glutamate receptor binding and acetylcholine receptor binding.

UniProtKB/Swiss-Prot for RAPSN Gene

  • Postsynaptic protein required for clustering of nicotinic acetylcholine receptors (nAChRs) at the neuromuscular junction. It may link the receptor to the underlying postsynaptic cytoskeleton, possibly by direct association with actin or spectrin.

Gene Wiki entry for RAPSN Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAPSN Gene

Genomics for RAPSN Gene

Regulatory Elements for RAPSN Gene

Enhancers for RAPSN Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G047498 1.2 Ensembl ENCODE dbSUPER 11.3 -50.3 -50308 1.4 NFIB TAF1 WRNIP1 MAX RAD21 YY1 HNF4G PRDM10 MAFK FOXA1 PTPMT1 NDUFS3 CELF1 RAPSN RNU5E-10P KBTBD4 ENSG00000231880 FAM180B C1QTNF4 MTCH2
GH11G047476 1 ENCODE dbSUPER 12.1 -28.5 -28546 1.5 NFIB TAF1 MAX RAD21 YY1 FOSL1 GATA2 HNF4G PRDM10 FOS RAPSN CELF1 PTPMT1 NDUFS3 C1QTNF4 RNU5E-10P ENSG00000231880 MTCH2 GC11P047482 GC11M054021
GH11G047495 1 ENCODE dbSUPER 11.4 -46.3 -46296 0.2 TBP ZNF362 RFX1 CEBPB ZEB2 ZNF394 CEBPG EP300 POLR2H IRF9 RAPSN NDUFS3 ENSG00000231880 RNU5E-10P MTCH2 AGBL2 GC11P047482 ENSG00000270072
GH11G047486 0.9 dbSUPER 11.4 -39.2 -39217 3.7 HDGF ZSCAN4 RAD21 YY1 ZNF121 ZNF366 EGR1 DEK ZNF362 SP5 MYBPC3 RAPSN NDUFS3 ENSG00000231880 RNU5E-10P MTCH2 AGBL2 C1QTNF4 GC11P047482 ENSG00000270072
GH11G047606 0.9 Ensembl ENCODE 10.4 -158.5 -158504 1.9 BHLHE40 EBF1 ZIC2 NR2F2 EGR1 PBX2 HMBOX1 FOS MAFK FNBP4 FAM180B KBTBD4 NDUFS3 CELF1 PTPMT1 ENSG00000231880 RNU5E-10P MTCH2 AGBL2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RAPSN on UCSC Golden Path with GeneCards custom track

Genomic Location for RAPSN Gene

Chromosome:
11
Start:
47,437,757 bp from pter
End:
47,449,178 bp from pter
Size:
11,422 bases
Orientation:
Minus strand

Genomic View for RAPSN Gene

Genes around RAPSN on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAPSN Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAPSN Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAPSN Gene

Proteins for RAPSN Gene

  • Protein details for RAPSN Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q13702-RAPSN_HUMAN
    Recommended name:
    43 kDa receptor-associated protein of the synapse
    Protein Accession:
    Q13702
    Secondary Accessions:
    • Q8TDF3
    • Q9BTD9

    Protein attributes for RAPSN Gene

    Size:
    412 amino acids
    Molecular mass:
    46328 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for RAPSN Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RAPSN Gene

Post-translational modifications for RAPSN Gene

  • Ubiquitinated by the BCR(KLHL8) complex, leading to its degradation.
  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RAPSN Gene

No data available for DME Specific Peptides for RAPSN Gene

Domains & Families for RAPSN Gene

Gene Families for RAPSN Gene

Suggested Antigen Peptide Sequences for RAPSN Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q13702

UniProtKB/Swiss-Prot:

RAPSN_HUMAN :
  • A cysteine-rich region homologous to part of the regulatory domain of protein kinase C may be important in interactions of this protein with the lipid bilayer.
  • Belongs to the RAPsyn family.
Domain:
  • A cysteine-rich region homologous to part of the regulatory domain of protein kinase C may be important in interactions of this protein with the lipid bilayer.
Family:
  • Belongs to the RAPsyn family.
genes like me logo Genes that share domains with RAPSN: view

Function for RAPSN Gene

Molecular function for RAPSN Gene

GENATLAS Biochemistry:
acetylcholine receptor associated protein,43kDa,rapsyn,involved in the clustering and anchoring the receptor in the membrane
UniProtKB/Swiss-Prot Function:
Postsynaptic protein required for clustering of nicotinic acetylcholine receptors (nAChRs) at the neuromuscular junction. It may link the receptor to the underlying postsynaptic cytoskeleton, possibly by direct association with actin or spectrin.

Gene Ontology (GO) - Molecular Function for RAPSN Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008270 zinc ion binding IEA --
GO:0033130 acetylcholine receptor binding IDA,IEA 18420419
GO:0035255 ionotropic glutamate receptor binding IEA --
GO:0043495 protein anchor IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with RAPSN: view
genes like me logo Genes that share phenotypes with RAPSN: view

Human Phenotype Ontology for RAPSN Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Models for RAPSN Gene

MGI Knock Outs for RAPSN:

Animal Model Products

CRISPR Products

Inhibitory RNA Products

No data available for Enzyme Numbers (IUBMB) , miRNA , Transcription Factor Targets and HOMER Transcription for RAPSN Gene

Localization for RAPSN Gene

Subcellular locations from UniProtKB/Swiss-Prot for RAPSN Gene

Cell membrane; Peripheral membrane protein; Cytoplasmic side. Cell junction, synapse, postsynaptic cell membrane; Peripheral membrane protein; Cytoplasmic side. Cytoplasm, cytoskeleton. Note=Cytoplasmic surface of postsynaptic membranes.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RAPSN gene
Compartment Confidence
plasma membrane 5
cytoskeleton 5
cytosol 5
golgi apparatus 3
extracellular 2
nucleus 1

Gene Ontology (GO) - Cellular Components for RAPSN Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005794 Golgi apparatus IEA --
GO:0005813 centrosome IDA --
GO:0005829 cytosol IDA --
GO:0005856 cytoskeleton IEA --
GO:0005886 plasma membrane IDA --
genes like me logo Genes that share ontologies with RAPSN: view

Pathways & Interactions for RAPSN Gene

genes like me logo Genes that share pathways with RAPSN: view

Pathways by source for RAPSN Gene

1 Qiagen pathway for RAPSN Gene

Gene Ontology (GO) - Biological Process for RAPSN Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007268 chemical synaptic transmission TAS,IEA 8812503
GO:0007271 synaptic transmission, cholinergic IGI 18420419
GO:0043525 positive regulation of neuron apoptotic process IEA --
GO:0071340 skeletal muscle acetylcholine-gated channel clustering IEA --
GO:1900075 positive regulation of neuromuscular synaptic transmission IEA --
genes like me logo Genes that share ontologies with RAPSN: view

No data available for SIGNOR curated interactions for RAPSN Gene

Drugs & Compounds for RAPSN Gene

(7) Drugs for RAPSN Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials

(3) Additional Compounds for RAPSN Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with RAPSN: view

Transcripts for RAPSN Gene

Unigene Clusters for RAPSN Gene

Receptor-associated protein of the synapse:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for RAPSN Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b
SP1:
SP2: - -

Relevant External Links for RAPSN Gene

GeneLoc Exon Structure for
RAPSN
ECgene alternative splicing isoforms for
RAPSN

Expression for RAPSN Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RAPSN Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for RAPSN Gene

This gene is overexpressed in Muscle - Skeletal (x38.9).

Protein differential expression in normal tissues from HIPED for RAPSN Gene

This gene is overexpressed in Ovary (63.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for RAPSN Gene



Protein tissue co-expression partners for RAPSN Gene

NURSA nuclear receptor signaling pathways regulating expression of RAPSN Gene:

RAPSN

SOURCE GeneReport for Unigene cluster for RAPSN Gene:

Hs.81218

Evidence on tissue expression from TISSUES for RAPSN Gene

  • Muscle(4.7)
  • Nervous system(2.1)

Phenotype-based relationships between genes and organs from Gene ORGANizer for RAPSN Gene

Germ Layers:
  • ectoderm
  • endoderm
  • mesoderm
Systems:
  • cardiovascular
  • digestive
  • immune
  • integumentary
  • lymphatic
  • nervous
  • reproductive
  • respiratory
  • skeletal muscle
  • skeleton
  • urinary
Organs:
Head and neck:
  • brain
  • cerebellum
  • cerebrospinal fluid
  • cheek
  • chin
  • cranial nerve
  • ear
  • eye
  • eyelid
  • face
  • head
  • jaw
  • larynx
  • lip
  • mandible
  • maxilla
  • meninges
  • mouth
  • neck
  • nose
  • olfactory bulb
  • outer ear
  • pharynx
  • skull
  • tongue
  • tooth
  • vocal cord
Thorax:
  • chest wall
  • clavicle
  • diaphragm
  • esophagus
  • heart
  • heart valve
  • lung
  • rib
  • rib cage
  • sternum
Abdomen:
  • kidney
  • liver
  • stomach
Pelvis:
  • pelvis
  • placenta
  • testicle
  • uterus
Limb:
  • ankle
  • arm
  • digit
  • elbow
  • femur
  • fibula
  • finger
  • foot
  • forearm
  • hand
  • hip
  • humerus
  • knee
  • lower limb
  • radius
  • shin
  • shoulder
  • thigh
  • tibia
  • toe
  • ulna
  • upper limb
  • wrist
General:
  • blood
  • blood vessel
  • hair
  • lymph vessel
  • peripheral nerve
  • peripheral nervous system
  • skin
  • spinal column
  • spinal cord
  • vertebrae
  • white blood cell
genes like me logo Genes that share expression patterns with RAPSN: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt for RAPSN Gene

Orthologs for RAPSN Gene

This gene was present in the common ancestor of animals.

Orthologs for RAPSN Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RAPSN 34 35
  • 99.27 (n)
cow
(Bos Taurus)
Mammalia RAPSN 34 35
  • 93.12 (n)
dog
(Canis familiaris)
Mammalia RAPSN 34 35
  • 92.8 (n)
rat
(Rattus norvegicus)
Mammalia Rapsn 34
  • 89.6 (n)
mouse
(Mus musculus)
Mammalia Rapsn 34 16 35
  • 89.32 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia RAPSN 35
  • 83 (a)
OneToOne
chicken
(Gallus gallus)
Aves RAPSN 34 35
  • 77.02 (n)
lizard
(Anolis carolinensis)
Reptilia RAPSN 35
  • 82 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rapsn 34
  • 77.18 (n)
zebrafish
(Danio rerio)
Actinopterygii rapsn 34 35
  • 71.36 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG1909 36 34 35
  • 43.23 (n)
worm
(Caenorhabditis elegans)
Secernentea rpy-1 34 35
  • 43.3 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 40 (a)
OneToMany
-- 35
  • 27 (a)
OneToMany
Species where no ortholog for RAPSN was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RAPSN Gene

ENSEMBL:
Gene Tree for RAPSN (if available)
TreeFam:
Gene Tree for RAPSN (if available)

Paralogs for RAPSN Gene

No data available for Paralogs for RAPSN Gene

Variants for RAPSN Gene

Sequence variations from dbSNP and Humsavar for RAPSN Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs104894293 Pathogenic, Myasthenic syndrome, congenital, 11, associated with acetylcholine receptor deficiency (CMS11) [MIM:616326] 47,441,675(-) CCGCC(C/T)GGGGC intron-variant, reference, missense
rs104894294 Pathogenic, Myasthenic syndrome, congenital, 11, associated with acetylcholine receptor deficiency (CMS11) [MIM:616326] 47,447,853(-) AGTGC(C/T)GCGTG reference, missense
rs104894299 Pathogenic, Myasthenic syndrome, congenital, 11, associated with acetylcholine receptor deficiency (CMS11) [MIM:616326] 47,448,079(-) CTGAA(A/C)CTGGC reference, missense
rs104894300 Pathogenic, Myasthenic syndrome, congenital, 11, associated with acetylcholine receptor deficiency (CMS11) [MIM:616326] 47,448,924(-) GGGGC(C/T)CCAGC reference, missense
rs121909254 Pathogenic, Myasthenic syndrome, congenital, 11, associated with acetylcholine receptor deficiency (CMS11) [MIM:616326] 47,448,832(-) TCCGC(A/C/G/T)TGCTG reference, missense

Structural Variations from Database of Genomic Variants (DGV) for RAPSN Gene

Variant ID Type Subtype PubMed ID
nsv832141 CNV loss 17160897

Variation tolerance for RAPSN Gene

Residual Variation Intolerance Score: 36.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.76; 73.46% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RAPSN Gene

Human Gene Mutation Database (HGMD)
RAPSN
SNPedia medical, phenotypic, and genealogical associations of SNPs for
RAPSN

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RAPSN Gene

Disorders for RAPSN Gene

MalaCards: The human disease database

(17) MalaCards diseases for RAPSN Gene - From: OMIM, ClinVar, GeneTests, Orphanet, Swiss-Prot, DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
fetal akinesia deformation sequence
  • arthrogryposis multiplex congenita pulmonary hypoplasia
myasthenic syndrome, congenital, 11, associated with acetylcholine receptor deficiency
  • congenital myasthenic syndrome 11
postsynaptic congenital myasthenic syndromes
  • congenital myasthenic syndromes, postsynaptic
congenital myasthenic syndrome
  • familial limb-girdle myasthenia
rapsn-related fetal akinesia deformation sequence
  • arthrogryposis multiplex congenita with pulmonary hypoplasia
- elite association - COSMIC cancer census association via MalaCards
Search RAPSN in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

RAPSN_HUMAN
  • Fetal akinesia deformation sequence (FADS) [MIM:208150]: A clinically and genetically heterogeneous group of disorders with congenital malformations related to impaired fetal movement. Clinical features include fetal akinesia, intrauterine growth retardation, polyhydramnios, arthrogryposis, pulmonary hypoplasia, craniofacial abnormalities, and cryptorchidism. {ECO:0000269 PubMed:18179903, ECO:0000269 PubMed:18252226}. Note=The disease is caused by mutations affecting the gene represented in this entry.
  • Myasthenic syndrome, congenital, 11, associated with acetylcholine receptor deficiency (CMS11) [MIM:616326]: A form of congenital myasthenic syndrome, a group of disorders characterized by failure of neuromuscular transmission, including pre-synaptic, synaptic, and post-synaptic disorders that are not of autoimmune origin. Clinical features are easy fatigability and muscle weakness affecting the axial and limb muscles (with hypotonia in early-onset forms), the ocular muscles (leading to ptosis and ophthalmoplegia), and the facial and bulbar musculature (affecting sucking and swallowing, and leading to dysphonia). The symptoms fluctuate and worsen with physical effort. CMS11 is an autosomal recessive disorder of postsynaptic neuromuscular transmission, due to deficiency of AChR at the endplate that results in low amplitude of the miniature endplate potential and current. {ECO:0000269 PubMed:11791205, ECO:0000269 PubMed:12730725, ECO:0000269 PubMed:12796535, ECO:0000269 PubMed:12929188, ECO:0000269 PubMed:14504330, ECO:0000269 PubMed:15036330, ECO:0000269 PubMed:15328566, ECO:0000269 PubMed:16931511, ECO:0000269 PubMed:17594401}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Relevant External Links for RAPSN

Genetic Association Database (GAD)
RAPSN
Human Genome Epidemiology (HuGE) Navigator
RAPSN
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RAPSN
genes like me logo Genes that share disorders with RAPSN: view

No data available for Genatlas for RAPSN Gene

Publications for RAPSN Gene

  1. Cloning of cDNA encoding human rapsyn and mapping of the RAPSN gene locus to chromosome 11p11.2-p11.1. (PMID: 8812503) Buckel A. … Vincent A. (Genomics 1996) 2 3 4 22 64
  2. Control of rapsyn stability by the CUL-3-containing E3 ligase complex. (PMID: 19158078) Nam S. … Lee J. (J. Biol. Chem. 2009) 3 4 22 64
  3. Mutation analysis of CHRNA1, CHRNB1, CHRND, and RAPSN genes in multiple pterygium syndrome/fetal akinesia patients. (PMID: 18179903) Vogt J. … Maher E.R. (Am. J. Hum. Genet. 2008) 3 4 22 64
  4. Impaired receptor clustering in congenital myasthenic syndrome with novel RAPSN mutations. (PMID: 16931511) Mueller J.S. … Lochmueller H. (Neurology 2006) 3 4 22 64
  5. Congenital myasthenic syndrome due to rapsyn deficiency: three cases with arthrogryposis and bulbar symptoms. (PMID: 15328566) Ioos C. … Estournet-Mathiaud B. (Neuropediatrics 2004) 3 4 22 64

Products for RAPSN Gene

Sources for RAPSN Gene

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