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Aliases for RAPGEF4-AS1 Gene

Subcategory (RNA class) for RAPGEF4-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for RAPGEF4-AS1 Gene

  • RAPGEF4 Antisense RNA 1 2 3 5
  • RAPGEF4 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for RAPGEF4-AS1 Gene

Previous GeneCards Identifiers for RAPGEF4-AS1 Gene

  • GC02M173542

Summaries for RAPGEF4-AS1 Gene

GeneCards Summary for RAPGEF4-AS1 Gene

RAPGEF4-AS1 (RAPGEF4 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAPGEF4-AS1 Gene

Genomics for RAPGEF4-AS1 Gene

Regulatory Elements for RAPGEF4-AS1 Gene

Enhancers for RAPGEF4-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F172725 1.3 Ensembl ENCODE 10.2 +9.9 9874 1.1 ZNF133 ARID4B FEZF1 DMAP1 ZNF48 YY1 ZNF143 FOS SP5 NFYC RAPGEF4-AS1 RAPGEF4 GC02P172713
GH02F172672 1.1 Ensembl ENCODE 10.6 +62.9 62862 1.3 CTCF MXI1 MAX FEZF1 ZNF644 ZNF7 YY1 ZNF316 ZBTB48 NR2F6 RAPGEF4 RAPGEF4-AS1 PDK1 PIR41529 GC02M172611
GH02F172782 1 Ensembl ENCODE 11 -47.0 -46959 1.7 CTCF MXI1 SAP130 MAX ZBTB40 RAD21 ZFHX2 GATA3 GATA2 NR2F6 RAPGEF4 RAPGEF4-AS1 GC02P172797
GH02F172829 0.8 Ensembl ENCODE 10.4 -93.2 -93156 0.3 JUND JUN RCOR1 MNT RAPGEF4 RAPGEF4-AS1 GC02P172797 ALDH7A1P2
GH02F172654 0.8 Ensembl ENCODE 10.3 +80.3 80303 2.3 JUND ELK1 BHLHE40 NFE2 FOS MAFK NFE2L2 RAPGEF4 RAPGEF4-AS1 PDK1 GC02M172611 ENSG00000199866 GC02M172559
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RAPGEF4-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for RAPGEF4-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001829594 -294 201 GLIS2 SUZ12 L3MBTL2 PATZ1 CBX2
ENSR00001829593 506 1001 MAZ GLIS2 SUZ12 L3MBTL2 PATZ1 KLF9 ZBTB26

Genomic Location for RAPGEF4-AS1 Gene

172,677,141 bp from pter
172,736,206 bp from pter
59,066 bases
Minus strand

Genomic View for RAPGEF4-AS1 Gene

Genes around RAPGEF4-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAPGEF4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAPGEF4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAPGEF4-AS1 Gene

Proteins for RAPGEF4-AS1 Gene

Post-translational modifications for RAPGEF4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RAPGEF4-AS1 Gene

Domains & Families for RAPGEF4-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RAPGEF4-AS1 Gene

Function for RAPGEF4-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RAPGEF4-AS1 Gene

Localization for RAPGEF4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RAPGEF4-AS1 Gene

Pathways & Interactions for RAPGEF4-AS1 Gene

SuperPathways for RAPGEF4-AS1 Gene

No Data Available

Interacting Proteins for RAPGEF4-AS1 Gene

Gene Ontology (GO) - Biological Process for RAPGEF4-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for RAPGEF4-AS1 Gene

Transcripts for RAPGEF4-AS1 Gene

mRNA/cDNA for RAPGEF4-AS1 Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RAPGEF4-AS1 Gene

RAPGEF4 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RAPGEF4-AS1 Gene

No ASD Table

Relevant External Links for RAPGEF4-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RAPGEF4-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RAPGEF4-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for RAPGEF4-AS1 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x6.9), Brain - Frontal Cortex (BA9) (x5.4), Brain - Caudate (basal ganglia) (x5.0), Brain - Putamen (basal ganglia) (x4.9), Brain - Anterior cingulate cortex (BA24) (x4.6), and Brain - Cortex (x4.6).

SOURCE GeneReport for Unigene cluster for RAPGEF4-AS1 Gene:

genes like me logo Genes that share expression patterns with RAPGEF4-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RAPGEF4-AS1 Gene

Orthologs for RAPGEF4-AS1 Gene

Evolution for RAPGEF4-AS1 Gene

Gene Tree for RAPGEF4-AS1 (if available)
Gene Tree for RAPGEF4-AS1 (if available)

No data available for Orthologs for RAPGEF4-AS1 Gene

Paralogs for RAPGEF4-AS1 Gene

No data available for Paralogs for RAPGEF4-AS1 Gene

Variants for RAPGEF4-AS1 Gene

Sequence variations from dbSNP and Humsavar for RAPGEF4-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs10189459 -- 172,726,107(+) gtggc(A/G)ttgcc nc-transcript-variant
rs10657436 -- 172,737,459(+) AGATA(-/ATAG)ATAAC intron-variant, upstream-variant-2KB
rs111546206 -- 172,736,055(+) TAGCT(A/C)GCCGG intron-variant
rs111695630 -- 172,735,924(+) GAGGC(A/C/G)CAGGC intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs111805106 -- 172,737,901(+) AGGAG(A/G)AAAAA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RAPGEF4-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv583665 CNV gain 21841781
esv2760591 CNV gain 21179565

Relevant External Links for RAPGEF4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RAPGEF4-AS1 Gene

Disorders for RAPGEF4-AS1 Gene

Relevant External Links for RAPGEF4-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for RAPGEF4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAPGEF4-AS1 Gene

Publications for RAPGEF4-AS1 Gene

  1. The full-ORF clone resource of the German cDNA consortium. (PMID: 17974005) Bechtel S. … Schupp I. (BMC Genomics 2007) 3 64
  2. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 3 64
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for RAPGEF4-AS1 Gene

Sources for RAPGEF4-AS1 Gene

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