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Aliases for RAPGEF4-AS1 Gene

Subcategory (RNA class) for RAPGEF4-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for RAPGEF4-AS1 Gene

  • RAPGEF4 Antisense RNA 1 2 3
  • RAPGEF4 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for RAPGEF4-AS1 Gene

ORGUL Members for RAPGEF4-AS1 Gene

Summaries for RAPGEF4-AS1 Gene

GeneCards Summary for RAPGEF4-AS1 Gene

RAPGEF4-AS1 (RAPGEF4 Antisense RNA 1) is a RNA Gene, and belongs to antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAPGEF4-AS1 Gene

Genomics for RAPGEF4-AS1 Gene

Genomic Location for RAPGEF4-AS1 Gene

Start:
172,677,141 bp from pter
End:
172,736,206 bp from pter
Size:
59,066 bases
Orientation:
Minus strand

Genomic View for RAPGEF4-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RAPGEF4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAPGEF4-AS1 Gene

No data available for Regulatory Elements for RAPGEF4-AS1 Gene

Proteins for RAPGEF4-AS1 Gene

Post-translational modifications for RAPGEF4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RAPGEF4-AS1 Gene

Domains for RAPGEF4-AS1 Gene

Gene Families for RAPGEF4-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with RAPGEF4-AS1: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for RAPGEF4-AS1 Gene

Function for RAPGEF4-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RAPGEF4-AS1 Gene

Localization for RAPGEF4-AS1 Gene

No data available for Gene Ontology (GO) - Cellular Components for RAPGEF4-AS1 Gene

Pathways for RAPGEF4-AS1 Gene

SuperPathways for RAPGEF4-AS1 Gene

No Data Available

Interacting Proteins for RAPGEF4-AS1 Gene

Gene Ontology (GO) - Biological Process for RAPGEF4-AS1 Gene

None

No data available for Pathways by source for RAPGEF4-AS1 Gene

Transcripts for RAPGEF4-AS1 Gene

mRNA/cDNA for RAPGEF4-AS1 Gene

(2) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RAPGEF4-AS1 Gene

RAPGEF4 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RAPGEF4-AS1 Gene

No ASD Table

Relevant External Links for RAPGEF4-AS1 Gene

GeneLoc Exon Structure for
RAPGEF4-AS1
ECgene alternative splicing isoforms for
RAPGEF4-AS1

Expression for RAPGEF4-AS1 Gene

mRNA expression in normal human tissues for RAPGEF4-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for RAPGEF4-AS1 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (6.9), Brain - Frontal Cortex (BA9) (5.4), Brain - Caudate (basal ganglia) (5.0), Brain - Putamen (basal ganglia) (4.9), Brain - Anterior cingulate cortex (BA24) (4.6), and Brain - Cortex (4.6).

SOURCE GeneReport for Unigene cluster for RAPGEF4-AS1 Gene Hs.711021

genes like me logo Genes that share expressions with RAPGEF4-AS1: view

Orthologs for RAPGEF4-AS1 Gene

Evolution for RAPGEF4-AS1 Gene

ENSEMBL:
Gene Tree for RAPGEF4-AS1 (if available)
TreeFam:
Gene Tree for RAPGEF4-AS1 (if available)

No data available for Orthologs for RAPGEF4-AS1 Gene

Paralogs for RAPGEF4-AS1 Gene

No data available for Paralogs for RAPGEF4-AS1 Gene

Variants for RAPGEF4-AS1 Gene

Sequence variations from dbSNP and Humsavar for RAPGEF4-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs767072 -- 172,727,420(-) GATAA(C/T)TCAGG nc-transcript-variant
rs836591 -- 172,725,148(-) aataa(A/G)tgaag nc-transcript-variant
rs836645 -- 172,729,204(-) acccc(A/G)tgtct intron-variant
rs864472 -- 172,727,035(-) CGAGT(C/T)ATTGA nc-transcript-variant
rs865641 -- 172,726,223(-) ggggt(A/G)ggggc nc-transcript-variant

Relevant External Links for RAPGEF4-AS1 Gene

HapMap Linkage Disequilibrium report
RAPGEF4-AS1

No data available for Structural Variations from Database of Genomic Variants (DGV) for RAPGEF4-AS1 Gene

Disorders for RAPGEF4-AS1 Gene

No disorders were found for RAPGEF4-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for RAPGEF4-AS1 Gene

Publications for RAPGEF4-AS1 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3
  2. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 3
  3. The full-ORF clone resource of the German cDNA consortium. (PMID: 17974005) Bechtel S. … Schupp I. (BMC Genomics 2007) 3

Products for RAPGEF4-AS1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate RAPGEF4-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for RAPGEF4-AS1
    • Block miRNA regulation of RAPGEF4-AS1 using miScript Target Protectors

    Sources for RAPGEF4-AS1 Gene

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