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Aliases for RAPGEF4-AS1 Gene

Subcategory (RNA class) for RAPGEF4-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RAPGEF4-AS1 Gene

  • RAPGEF4 Antisense RNA 1 2 3 5
  • RAPGEF4 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for RAPGEF4-AS1 Gene

Previous GeneCards Identifiers for RAPGEF4-AS1 Gene

  • GC02M173542

Summaries for RAPGEF4-AS1 Gene

GeneCards Summary for RAPGEF4-AS1 Gene

RAPGEF4-AS1 (RAPGEF4 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAPGEF4-AS1 Gene

Genomics for RAPGEF4-AS1 Gene

Regulatory Elements for RAPGEF4-AS1 Gene

Enhancers for RAPGEF4-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G172782 1 Ensembl ENCODE 11 -46.9 -46916 1.6 CTCF MXI1 SAP130 MAX RAD21 ZBTB40 ZFHX2 GATA3 GATA2 NR2F6 RAPGEF4 RAPGEF4-AS1 GC02P172797
GH02G172725 1 ENCODE 10.2 +9.9 9874 1.1 ZNF133 ARID4B DMAP1 FEZF1 ZNF48 YY1 ZNF143 FOS SP5 MXD4 RAPGEF4-AS1 RAPGEF4 GC02P172713
GH02G172654 0.9 Ensembl ENCODE 10.3 +80.3 80303 2.3 FOXA2 BHLHE40 JUND ELK1 BCL6B FOS NFE2 MAFK NFE2L2 RAPGEF4 RAPGEF4-AS1 PDK1 GC02M172611 ENSG00000199866 GC02M172559
GH02G172672 0.8 ENCODE 10.6 +62.9 62862 1.3 CTCF MXI1 MAX FEZF1 ZNF644 ZNF7 YY1 ZNF316 ZBTB48 NR2F6 RAPGEF4 RAPGEF4-AS1 PDK1 PIR41529 GC02M172611
GH02G172829 0.6 ENCODE 10.4 -93.2 -93242 0.2 NFIC JUND NFIB JUN RCOR1 MNT RAPGEF4 RAPGEF4-AS1 GC02P172797 ALDH7A1P2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RAPGEF4-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for RAPGEF4-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000126363 406 401 MAZ MXI1 RFX1 RNF2 SUZ12 RBBP5 KLF9 EZH2

Genomic Location for RAPGEF4-AS1 Gene

Chromosome:
2
Start:
172,677,141 bp from pter
End:
172,736,206 bp from pter
Size:
59,066 bases
Orientation:
Minus strand

Genomic View for RAPGEF4-AS1 Gene

Genes around RAPGEF4-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAPGEF4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAPGEF4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAPGEF4-AS1 Gene

Proteins for RAPGEF4-AS1 Gene

Post-translational modifications for RAPGEF4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RAPGEF4-AS1 Gene

Domains & Families for RAPGEF4-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RAPGEF4-AS1 Gene

Function for RAPGEF4-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RAPGEF4-AS1 Gene

Localization for RAPGEF4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RAPGEF4-AS1 Gene

Pathways & Interactions for RAPGEF4-AS1 Gene

SuperPathways for RAPGEF4-AS1 Gene

No Data Available

Interacting Proteins for RAPGEF4-AS1 Gene

Gene Ontology (GO) - Biological Process for RAPGEF4-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RAPGEF4-AS1 Gene

Drugs & Compounds for RAPGEF4-AS1 Gene

No Compound Related Data Available

Transcripts for RAPGEF4-AS1 Gene

mRNA/cDNA for RAPGEF4-AS1 Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RAPGEF4-AS1 Gene

RAPGEF4 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RAPGEF4-AS1 Gene

No ASD Table

Relevant External Links for RAPGEF4-AS1 Gene

GeneLoc Exon Structure for
RAPGEF4-AS1
ECgene alternative splicing isoforms for
RAPGEF4-AS1

Expression for RAPGEF4-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RAPGEF4-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for RAPGEF4-AS1 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x6.9), Brain - Frontal Cortex (BA9) (x5.4), Brain - Caudate (basal ganglia) (x5.0), Brain - Putamen (basal ganglia) (x4.9), Brain - Anterior cingulate cortex (BA24) (x4.6), and Brain - Cortex (x4.6).

SOURCE GeneReport for Unigene cluster for RAPGEF4-AS1 Gene:

Hs.711021
genes like me logo Genes that share expression patterns with RAPGEF4-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RAPGEF4-AS1 Gene

Orthologs for RAPGEF4-AS1 Gene

Evolution for RAPGEF4-AS1 Gene

ENSEMBL:
Gene Tree for RAPGEF4-AS1 (if available)
TreeFam:
Gene Tree for RAPGEF4-AS1 (if available)

No data available for Orthologs for RAPGEF4-AS1 Gene

Paralogs for RAPGEF4-AS1 Gene

No data available for Paralogs for RAPGEF4-AS1 Gene

Variants for RAPGEF4-AS1 Gene

Sequence variations from dbSNP and Humsavar for RAPGEF4-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000093495 -- 172,726,796(+) TCATA(A/C)CAGAT nc-transcript-variant
rs1000157669 -- 172,732,080(+) TAATA(C/T)TATTA intron-variant
rs1000398929 -- 172,734,890(+) AACAT(G/T)TAACT intron-variant, upstream-variant-2KB
rs1001002592 -- 172,733,088(+) TTTAT(A/T)GAGTT intron-variant
rs1001005076 -- 172,725,103(+) TTGCA(C/T)GCAAC nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for RAPGEF4-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2760591 CNV gain 21179565
nsv583665 CNV gain 21841781

Relevant External Links for RAPGEF4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RAPGEF4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RAPGEF4-AS1 Gene

Disorders for RAPGEF4-AS1 Gene

Relevant External Links for RAPGEF4-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RAPGEF4-AS1

No disorders were found for RAPGEF4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAPGEF4-AS1 Gene

Publications for RAPGEF4-AS1 Gene

  1. The full-ORF clone resource of the German cDNA consortium. (PMID: 17974005) Bechtel S. … Schupp I. (BMC Genomics 2007) 3 64
  2. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 3 64
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for RAPGEF4-AS1 Gene

Sources for RAPGEF4-AS1 Gene

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