Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

RAPGEF2 Gene

protein-coding   GIFtS: 56
GCID: GC04P160025

Rap guanine nucleotide exchange factor (GEF) 2

(Previous name: PDZ domain containing guanine nucleotide exchange factor...)
(Previous symbol: PDZGEF1)
  Search for RAPGEF2
in our new
 Human Malady Compendium 
Biological research products
for RAPGEF2
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Rap Guanine Nucleotide Exchange Factor (GEF) 21 2     NRap GEP2 3
PDZ-GEF11 2 3     PDZ Domain-Containing Guanine Nucleotide Exchange Factor 12 3
PDZGEF11 2 3     DKFZP586O14221
RA-GEF1 2 3     CNrasGEF2
PDZ Domain Containing Guanine Nucleotide Exchange Factor (GEF) 11 2     RA(Ras/Rap1A-Associating)-GEF1
KIAA03131 3     Rap-GEP2
Neural RAP Guanine Nucleotide Exchange Protein2 3     Rap Guanine Nucleotide Exchange Factor 22
NRAPGEP2 3     

External Ids:    HGNC: 168541   Entrez Gene: 96932   Ensembl: ENSG000001097567   OMIM: 6095305   UniProtKB: Q9Y4G83   

Export aliases for RAPGEF2 gene to outside databases

Previous GC identifers: GC04P160767 GC04P160546 GC04P160244 GC04P160409 GC04P160188 GC04P155939


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for RAPGEF2:
Members of the RAS (see HRAS; MIM 190020) subfamily of GTPases function in signal transduction as GTP/GDP-regulated
switches that cycle between inactive GDP- and active GTP-bound states. Guanine nucleotide exchange factors (GEFs),
such as RAPGEF2, serve as RAS activators by promoting acquisition of GTP to maintain the active GTP-bound state and
are the key link between cell surface receptors and RAS activation (Rebhun et al., 2000 (PubMed 10934204)).(supplied
by OMIM, Mar 2008)

UniProtKB/Swiss-Prot: RPGF2_HUMAN, Q9Y4G8
Function: Guanine nucleotide exchange factor (GEF) for Rap1A, Rap1B and Rap2B GTPases. Does not interact with cAMP or
cGMP

Gene Wiki entry for RAPGEF2


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000004.11  NC_018915.1  NT_016354.19  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the RAPGEF2 gene promoter:
         C/EBPbeta   HOXA3   ATF-2   Lmo2   Cdc5   RORalpha1   SRY   FOXC1   Nkx6-1   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for RAPGEF2

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RAPGEF2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4q32.1   Ensembl cytogenetic band:  4q32.1   HGNC cytogenetic band: 4q32.1

RAPGEF2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RAPGEF2 gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04P160025:  view genomic region     (about GC identifiers)

Start:
160,025,330 bp from pter      End:
160,281,321 bp from pter
Size:
255,992 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: RPGF2_HUMAN, Q9Y4G8 (See protein sequence)
Recommended Name: Rap guanine nucleotide exchange factor 2  
Size: 1499 amino acids; 167417 Da
Subunit: Interacts with MAGI2
Subcellular location: Cell membrane (By similarity). Note=Associated with the synaptic plasma membrane (By similarity)
Sequence caution: Sequence=BAA20772.2; Type=Erroneous initiation;
Secondary accessions: D3DP27

Explore the universe of human proteins at neXtProt for RAPGEF2: NX_Q9Y4G8

Post-translational modifications:

  • Phosphorylation by PLK2 promotes its activity (By similarity)1
  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q9Y4G8

  • RAPGEF2 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_055062.1  
    ENSEMBL proteins: 
     ENSP00000422707   ENSP00000421602   ENSP00000421740   ENSP00000264431   ENSP00000422361  
     ENSP00000421624   ENSP00000422098   ENSP00000421083   ENSP00000427334  

    Human Recombinant Protein Products: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Browse OriGene full length recombinant human proteins expressed in human HEK293 cells
    Browse OriGene Protein Over-expression Lysates
    OriGene Custom Protein Services for RAPGEF2 
    GenScript Custom Purified and Recombinant Proteins Services for RAPGEF2
    Novus Biologicals RAPGEF2 Protein
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for RAPGEF2

    Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622intracellular IEA--
    GO:0005887integral to plasma membrane NAS10934204
    GO:0016020membrane IDA10608883


    RAPGEF2 for ontologies           About GeneDecksing



    RAPGEF2 Antibody Products: 
    Browse EMD Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Browse R&D Systems for Antibodies
    Browse OriGene Antibodies
    OriGene Custom Antibody Services for RAPGEF2 
    GenScript Custom Superior Antibodies Services for RAPGEF2
    Novus Biologicals RAPGEF2 Antibodies
    Search for Antibodies for RAPGEF2 at Abcam  
    Uscn Antibodies for RAPGEF2
    Search ThermoFisher Antibodies for RAPGEF2

    Assay Products for RAPGEF2: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for RAPGEF2
    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for RAPGEF2


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    RAPGEF2 for domains           About GeneDecksing

    5/9 InterPro domains/families (see all 9):
     IPR008937 Ras_GEF
     IPR018490 cNMP-bd-like
     IPR023578 Ras_GEF_dom
     IPR001895 RasGRF_CDC25
     IPR000159 Ras-assoc

    Graphical View of Domain Structure for InterPro Entry Q9Y4G8

    ProtoNet protein and cluster: Q9Y4G8

    4 Blocks protein families:
    IPB000159 RA domain
    IPB000595 Cyclic nucleotide-binding domain
    IPB001478 PDZ/DHR/GLGF domain
    IPB001895 Guanine-nucleotide dissociation stimulator CDC25


    UniProtKB/Swiss-Prot: RPGF2_HUMAN, Q9Y4G8
    Similarity: Contains 1 cyclic nucleotide-binding domain
    Similarity: Contains 1 N-terminal Ras-GEF domain
    Similarity: Contains 1 PDZ (DHR) domain
    Similarity: Contains 1 Ras-associating domain
    Similarity: Contains 1 Ras-GEF domain


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: RPGF2_HUMAN, Q9Y4G8
    Function: Guanine nucleotide exchange factor (GEF) for Rap1A, Rap1B and Rap2B GTPases. Does not interact with cAMP or
    cGMP

    miRNA
    Products:
        
    Browse 3'-UTR reporter clones for miRNA target validation
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat RAPGEF2
    8/143 QIAGEN miScript miRNA Assays for microRNAs that regulate RAPGEF2 (see all 143):
    hsa-miR-106a hsa-miR-128 hsa-miR-519a hsa-miR-4275 hsa-miR-502-3p hsa-miR-1243 hsa-miR-4326 hsa-miR-200b
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for RAPGEF2 (see all 7)
    OriGene shRNA RFP: RAPGEF2
    OriGene siRNA: RAPGEF2
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RAPGEF2

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for RAPGEF2

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for RAPGEF2 (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RAPGEF2
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: RAPGEF2 (NM_014247)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for RAPGEF2
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RAPGEF2 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for RAPGEF2
    Search LifeMap BioReagents cell lines for RAPGEF2

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RAPGEF2

    Gene Ontology (GO): 5/7 molecular function terms (GO ID links to tree view) (see all 7):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004871signal transducer activity TAS10934204
    GO:0005085guanyl-nucleotide exchange factor activity ----
    GO:0005509calcium ion binding NAS10934204
    GO:0017034Rap guanyl-nucleotide exchange factor activity IDA10608883
    GO:0019901protein kinase binding IEA--


    RAPGEF2 for ontologies           About GeneDecksing


    2 GenomeRNAi human phenotypes for RAPGEF2:
     Altered focal adhesion (FA) or  Synthetic lethal with Ras 

    Animal Models:
         Mouse knock-outs for RAPGEF2: Rapgef2tm1.1Tkat Rapgef2tm1.2Hous
         12 MGI mutant phenotypes (inferred from 4 alleles(MGI details for Rapgef2):
     cardiovascular system  cellular  digestive/alimentary  embryogenesis  growth/size 
     hematopoietic system  immune system  integument  liver/biliary system  mortality/aging 
     nervous system  no phenotypic analysis 

    RAPGEF2 for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/6 super-pathways (see all 6About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Development_A2B receptor- action via G-protein alpha s
    Development A2B receptor: action via G-protein alpha s1.00
    Development_A2A receptor signaling0.43
    Development_A2B receptor- action via G-protein alpha s1.00
    Development A2A receptor signaling0.43
    2G-protein signaling_G-Protein alpha-i signaling cascades
    Development Beta-adrenergic receptors regulation of ERK0.55
    G-protein signaling_G-Protein alpha-s signaling cascades0.44
    Development_Beta-adrenergic receptors regulation of ERK0.55
    G-protein signaling G-Protein alpha-s signaling cascades0.44
    3G-protein signaling Rap1A regulation pathway
    G-protein signaling Rap1A regulation pathway1.00
    G-protein signaling_Rap1A regulation pathway0.88
    4G-protein signaling K-RAS regulation pathway
    G-protein signaling_H-RAS regulation pathway0.27
    G-protein signaling H-RAS regulation pathway0.27
    5G-protein signaling_RhoA regulation pathway
    G-protein signaling Rap2B regulation pathway0.04
    G-protein signaling_Rap2B regulation pathway0.04

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    5/7 EMD Millipore Pathways for RAPGEF2 (see all 7)
        Development Beta-adrenergic receptors regulation of ERK
    G-protein signaling Rap2B regulation pathway
    Development A2A receptor signaling
    G-protein signaling G-Protein alpha-s signaling cascades
    G-protein signaling Rap1A regulation pathway


    5/7 GeneGo (Thomson Reuters) Pathways for RAPGEF2 (see all 7)
        G-protein signaling H-RAS regulation pathway
    G-protein signaling G-Protein alpha-s signaling cascades
    Development A2A receptor signaling
    G-protein signaling Rap1A regulation pathway
    Development A2B receptor- action via G-protein alpha s


    1         Kegg Pathway  (Kegg details for RAPGEF2):
        MAPK signaling pathway


    RAPGEF2 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for RAPGEF2

    STRING Interaction Network Preview (showing 5 interactants - click image to see 22)

    5/66 Interacting proteins for RAPGEF2 (Q9Y4G82, 3 ENSP000002644314) via UniProtKB, MINT, STRING, and/or I2D (see all 66)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    MAGI2Q86UL82, 3, ENSP000003461514MINT-58362 MINT-58363 I2D: score=4 STRING: ENSP00000346151
    NEDD4P469342, 3, ENSP000003455304MINT-8289963 I2D: score=2 STRING: ENSP00000345530
    NEDD4LQ96PU52, 3, ENSP000003831994MINT-8290088 I2D: score=1 STRING: ENSP00000383199
    HSPA1AP081073, ENSP000003648024I2D: score=3 STRING: ENSP00000364802
    YWHAZP631042, 3, ENSP000003095034MINT-3308059 I2D: score=3 STRING: ENSP00000309503
    About this table

    Gene Ontology (GO): 5/6 biological process terms (GO ID links to tree view) (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000165MAPK cascade NAS10934204
    GO:0007264small GTPase mediated signal transduction TAS10934204
    GO:0019933cAMP-mediated signaling NAS10934204
    GO:0032854positive regulation of Rap GTPase activity ----
    GO:0035556intracellular signal transduction TAS10608883


    RAPGEF2 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    RAPGEF2 for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for RAPGEF2

    10/847 HMDB Compounds for RAPGEF2 (see all 847)    About this table
    CompoundSynonyms CAS #PubMed Ids
    Cyclic AMPCyclic AMP (see all 19)60-92-4--
    DG(14:0/14:0/0:0)DAG(14:0/14:0) (see all 9)----
    DG(14:0/14:1(9Z)/0:0)DAG(14:0/14:1) (see all 15)----
    DG(14:0/15:0/0:0)Diacylglycerol(29:0) (see all 9)----
    DG(14:0/16:0/0:0)DAG(30:0) (see all 9)----
    DG(14:0/16:1(9Z)/0:0)DG(30:1) (see all 15)----
    DG(14:0/18:0/0:0)DG(14:0/18:0) (see all 9)----
    DG(14:0/18:1(11Z)/0:0)Diacylglycerol (see all 15)----
    DG(14:0/18:1(9Z)/0:0)1-myristoyl-2-oleoyl-sn-glycerol (see all 15)----
    DG(14:0/18:2(9Z,12Z)/0:0)DAG(14:0/18:2n6) (see all 15)----
    2 Novoseek chemical compound relationships for RAPGEF2 gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    gdp 62.7 1 11168587 (1)
    gtp 51.7 1 11168587 (1)

    Search CenterWatch for drugs/clinical trials and news about RAPGEF2 / RPGF2 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for RAPGEF2 gene: 
    NM_014247.2  

    Unigene Cluster for RAPGEF2:

    Rap guanine nucleotide exchange factor (GEF) 2
    Hs.113912  [show with all ESTs]
    Unigene Representative Sequence: NM_014247
    13 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000505478 ENST00000504604 ENST00000503328 ENST00000511336 ENST00000510510
    ENST00000264431(uc003iqg.4) ENST00000514565 ENST00000513816 ENST00000512056
    ENST00000502485 ENST00000510253 ENST00000505026 ENST00000509891

    miRNA
    Products:
         
    Browse 3'-UTR reporter clones for miRNA target validation
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat RAPGEF2
    8/143 QIAGEN miScript miRNA Assays for microRNAs that regulate RAPGEF2 (see all 143):
    hsa-miR-106a hsa-miR-128 hsa-miR-519a hsa-miR-4275 hsa-miR-502-3p hsa-miR-1243 hsa-miR-4326 hsa-miR-200b
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for RAPGEF2 (see all 7)
    OriGene shRNA RFP: RAPGEF2
    OriGene siRNA: RAPGEF2
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RAPGEF2
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for RAPGEF2 (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RAPGEF2
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: RAPGEF2 (NM_014247)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for RAPGEF2
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RAPGEF2 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for RAPGEF2
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat RAPGEF2
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RAPGEF2
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RAPGEF2

    Additional cDNA sequence: 

    AB002311.1 AF070570.1 AK294459.1 BC110355.1 BC117321.1 BX640769.1 

    11 DOTS entries:

    DT.318505  DT.100782568  DT.92037359  DT.110285  DT.91912041  DT.75189664  DT.100680526  DT.100782566 
    DT.95373730  DT.100782572  DT.91741520 

    24/191 AceView cDNA sequences (see all 191):

    BG403618 AI092560 BQ017652 BX642629 CA867476 BF435298 BE644674 AA766231 
    AI469956 AA628277 BU620827 AA884263 CB530005 AI861871 CD674417 AA845840 
    CR621095 BU739348 BM714697 AF070570 CA438264 BF435817 CD743235 BE552426 

    GeneLoc Exon Structure

    5 Alternative Splicing Database (ASD) splice patterns (SP) for RAPGEF2    About this scheme

    ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16a · 16b ^ 17 ^ 18a · 18b ^ 19 ^ 20a · 20b ^ 21a · 21b ^ 22a ·
    SP1:                                                                                                                                            -     -     -   
    SP2:                                                                                                                                                  -     -   
    SP3:                                                                                                        -                                                   
    SP4:                                                                                                                                                        -   
    SP5:                                                                                                                                                            

    ExUns: 22b · 22c ^ 23a · 23b ^ 24 ^ 25
    SP1:                                    
    SP2:                                    
    SP3:                                    
    SP4:                                    
    SP5:                                    


    ECgene alternative splicing isoforms for RAPGEF2

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    RAPGEF2 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: TGCATATAGA

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See RAPGEF2 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for RAPGEF2

    SOURCE GeneReport for Unigene cluster: Hs.113912

    UniProtKB/Swiss-Prot: RPGF2_HUMAN, Q9Y4G8
    Tissue specificity: Highest expression levels in brain. Lower expression levels in heart, kidney, lung, and placenta

        SABiosciences Custom PCR Arrays for RAPGEF2
    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for RAPGEF2
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat RAPGEF2
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RAPGEF2
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RAPGEF2
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RAPGEF2

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for RAPGEF2 gene from 5/23 species (see all 23)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves RAPGEF21 Rap guanine nucleotide exchange factor (GEF) 2 83.37(n)
    94.09(a)
      422418  XM_420387.3  XP_420387.3 
    lizard
    (Anolis carolinensis)
    Reptilia RAPGEF26
    --
    93(a)
    1 ↔ 1
    5(128005760-128046863)
    zebrafish
    (Danio rerio)
    Actinopterygii CA469886.12   -- 75.82(n)   335019  CA469886.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta Gef261 CG9491-PA 52.18(n)
    50.72(a)
      33881  NM_001144325.1  NP_001137797.1 
    worm
    (Caenorhabditis elegans)
    Secernentea pxf-11 Protein PXF-1 49.88(n)
    40.87(a)
      177894  NM_001028218.3  NP_001023389.1 


    ENSEMBL Gene Tree for RAPGEF2 (if available)
    TreeFam Gene Tree for RAPGEF2 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for RAPGEF2 gene
    RAPGEFL12  RAPGEF62  RASGEF1A2  RAPGEF32  RASGEF1C2  RAPGEF42  RASGEF1B2  RAPGEF52  
    7 SIMAP similar genes for RAPGEF2 using alignment to 10 protein entries:     RPGF2_HUMAN (see all proteins):
    DKFZp586O1422    PDZGEF1    KIA001LB    RAPGEF6    FNIP1    PDZD11
    RAPGEF3

    RAPGEF2 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section
    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing RAPGEF2
    DNA2.0 Custom Variant and Variant Library Synthesis for RAPGEF2

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    RAPGEF2 for disorders           About MalaCards

    RAPGEF2 for disorders           About GeneDecksing

    OMIM gene information: 609530    OMIM disorders: --


    Export disorders for RAPGEF2 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for RAPGEF2 gene, integrated from 9 sources (see all 32):
    (articles sorted by number of sources associating them with RAPGEF2)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Identification of guanine nucleotide exchange factors (GEFs) for the Rap1 GTPase. Regulation of MR-GEF by M-Ras-GTP interaction. (PubMed id 10934204)1, 2, 3, 9 Rebhun J.F.... Quilliam L.A. (2000)
    2. Prediction of the coding sequences of unidentified human genes. VII. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro. (PubMed id 9205841)1, 2, 3 Nagase T.... Ohara O. (1997)
    3. PDZ-GEF1, a guanine nucleotide exchange factor specific for Rap1 and Rap2. (PubMed id 10608883)1, 2 de Rooij J....Bos J.L. (1999)
    4. nRap GEP: a novel neural GDP/GTP exchange protein for rap1 small G protein that interacts with synaptic scaffolding molecule (S-SCAM). (PubMed id 10548487)1, 2 Ohtsuka T.... Takai Y. (1999)
    5. RA-GEF, a novel Rap1A guanine nucleotide exchange factor containing a Ras/Rap1A-associating domain, is conserved between nematode and humans. (PubMed id 10608844)1, 9 Liao Y....Kataoka T. (1999)
    6. A yeast two-hybrid screen reveals that osteopontin ass ociates with MAP1A and MAP1B in addition to other proteins linked to microtubule stability, apoptosis and protein degradation in the human brain. (PubMed id 22779921)1 Long P....Rose S. (2012)
    7. DNA methylation shows genome-wide association of NFIX, RAPGEF2 and MSRB3 with gestational age at birth. (PubMed id 22422452)1 Lee H....Fallin M.D. (2012)
    8. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)
    9. Epac1 and PDZ-GEF cooperate in Rap1 mediated endothel ial junction control. (PubMed id 21840392)1 Pannekoek W.J....Bos J.L. (2011)
    10. Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (2011)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 9693 HGNC: 16854 AceView: RAPGEF2 Ensembl:ENSG00000109756 euGenes: HUgn9693
    ECgene: RAPGEF2 Kegg: 9693 H-InvDB: RAPGEF2

    (According to HUGE)
    About This Section
    HUGE: KIAA0313

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for RAPGEF2 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for RAPGEF2 Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for RAPGEF2 gene:
    Search GeneIP for patents involving RAPGEF2

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
    In Situ Hybridization Assays from
    Advanced Cell Diagnostics
    About This Section

     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Browse Antibodies   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Browse Recombinant/Natural Proteins  
     Browse OriGene Antibodies   OriGene shRNA RFP for RAPGEF2  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for RAPGEF2   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for RAPGEF2  
     Browse OriGene Protein Over-expression Lysates   Browse OriGene Fluorogenic Cell Assay Kits  
     OriGene siRNA for RAPGEF2   Browse 3'-UTR reporter clones for miRNA target validation  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RAPGEF2   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for RAPGEF2  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     Browse OriGene full length recombinant human proteins expressed in human HEK293 cells   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for RAPGEF2   OriGene Custom Protein Services for RAPGEF2  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat RAPGEF2
     QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing RAPGEF2
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RAPGEF2
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RAPGEF2
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RAPGEF2
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RAPGEF2
     GenScript Custom Purified and Recombinant Proteins Services for RAPGEF2 GenScript cDNA clones with any tag delivered in your preferred vector for RAPGEF2
     GenScript Custom Assay Services for RAPGEF2 GenScript Custom Superior Antibodies Services for RAPGEF2
     GenScript Custom overexpressing Cell Line Services for RAPGEF2 CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Search for Antibodies & Assays

     Regulatory tfbs in RAPGEF2 promoter
     Search Chromatin IP Primers for RAPGEF2
     RT2 qPCR Primer Assay in human, mouse, rat RAPGEF2
     GNC Network for RAPGEF2
     SABiosciences Custom PCR Arrays for RAPGEF2
     Search Tocris compounds for RAPGEF2
     Browse Sino Biological Proteins and Antibodies
     Browse Sino Biological cDNA Clones
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     RAPGEF2 antibodies
     RAPGEF2 proteins
     Search for Antibodies for RAPGEF2 at Abcam
     See all of Abcam's Antibodies, Kits and Proteins for RAPGEF2
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Browse ProSpec Recombinant Proteins




     RAPGEF2 Proteins, Antibodies, CLIAs, and ELISAs
     Search LifeMap BioReagents cell lines for RAPGEF2
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RAPGEF2
     Browse SwitchGear 3'UTR luciferase reporter plasmids for RAPGEF2
     Browse SwitchGear Promoter luciferase reporter plasmids for RAPGEF2
     Search ThermoFisher Antibodies for RAPGEF2
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RAPGEF2
           
    GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      RAPGEF2 gene at Home site.
    hostname: 356980-web2.xennexinc.com index build: 100 solr: 1.4