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Aliases for RAP2C-AS1 Gene

Subcategory (RNA class) for RAP2C-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RAP2C-AS1 Gene

  • RAP2C Antisense RNA 1 2 3 5

External Ids for RAP2C-AS1 Gene

Previous GeneCards Identifiers for RAP2C-AS1 Gene

  • GC0XP131354

Summaries for RAP2C-AS1 Gene

GeneCards Summary for RAP2C-AS1 Gene

RAP2C-AS1 (RAP2C Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for RAP2C-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAP2C-AS1 Gene

Genomics for RAP2C-AS1 Gene

GeneHancer (GH) Regulatory Elements for RAP2C-AS1 Gene

Promoters and enhancers for RAP2C-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI132215 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 550.8 +0.6 584 4.7 ARID4B SIN3A FEZF1 DMAP1 YY1 ZNF143 SP3 SP5 MXD4 REST RAP2C RAP2C-AS1
GH0XI132227 Enhancer 0.6 Ensembl ENCODE 0.4 +10.4 10374 0.2 HLF CEBPA CEBPB GC0XP132220 RAP2C-AS1 GC0XM132370
GH0XI132237 Enhancer 0.5 Ensembl ENCODE 0.3 +20.3 20339 0.5 SPI1 FRMD7 GC0XP132220 RAP2C-AS1 GC0XM132370
GH0XI132271 Enhancer 0.7 Ensembl ENCODE 0.2 +54.1 54091 1.6 SMARCE1 CTBP1 MAX CEBPB CHD2 GC0XP132220 RAP2C-AS1 GC0XM132370
GH0XI132411 Promoter/Enhancer 1.3 EPDnew ENCODE 0.1 +195.5 195488 3.1 ELF3 FOXA2 ARID4B RAD21 RARA YY1 CREM MIXL1 SP5 CEBPB MBNL3 GC0XM132373 RAP2C-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RAP2C-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RAP2C-AS1 Gene

Genomic Locations for RAP2C-AS1 Gene
chrX:132,217,147-132,432,862
(GRCh38/hg38)
Size:
215,716 bases
Orientation:
Plus strand
chrX:131,351,175-131,566,890
(GRCh37/hg19)

Genomic View for RAP2C-AS1 Gene

Genes around RAP2C-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAP2C-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAP2C-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAP2C-AS1 Gene

Proteins for RAP2C-AS1 Gene

Post-translational modifications for RAP2C-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RAP2C-AS1 Gene

Domains & Families for RAP2C-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RAP2C-AS1 Gene

Function for RAP2C-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RAP2C-AS1 Gene

Localization for RAP2C-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RAP2C-AS1 Gene

Pathways & Interactions for RAP2C-AS1 Gene

SuperPathways for RAP2C-AS1 Gene

No Data Available

Interacting Proteins for RAP2C-AS1 Gene

Gene Ontology (GO) - Biological Process for RAP2C-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RAP2C-AS1 Gene

Drugs & Compounds for RAP2C-AS1 Gene

No Compound Related Data Available

Transcripts for RAP2C-AS1 Gene

mRNA/cDNA for RAP2C-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RAP2C-AS1 Gene

No ASD Table

Relevant External Links for RAP2C-AS1 Gene

GeneLoc Exon Structure for
RAP2C-AS1
ECgene alternative splicing isoforms for
RAP2C-AS1

Expression for RAP2C-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RAP2C-AS1 Gene

genes like me logo Genes that share expression patterns with RAP2C-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RAP2C-AS1 Gene

Orthologs for RAP2C-AS1 Gene

Evolution for RAP2C-AS1 Gene

ENSEMBL:
Gene Tree for RAP2C-AS1 (if available)
TreeFam:
Gene Tree for RAP2C-AS1 (if available)

No data available for Orthologs for RAP2C-AS1 Gene

Paralogs for RAP2C-AS1 Gene

No data available for Paralogs for RAP2C-AS1 Gene

Variants for RAP2C-AS1 Gene

Sequence variations from dbSNP and Humsavar for RAP2C-AS1 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1000030255 -- 132,332,436(+) T/C intron_variant
rs1000039943 -- 132,328,635(+) G/C intron_variant
rs1000065638 -- 132,320,444(+) T/G intron_variant
rs1000090870 -- 132,367,528(+) C/G intron_variant
rs1000127851 -- 132,315,519(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for RAP2C-AS1 Gene

Variant ID Type Subtype PubMed ID
esv1771993 CNV insertion 17803354
nsv1110873 OTHER inversion 24896259
nsv510860 CNV deletion 20534489

Additional Variant Information for RAP2C-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RAP2C-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RAP2C-AS1 Gene

Disorders for RAP2C-AS1 Gene

Additional Disease Information for RAP2C-AS1

No disorders were found for RAP2C-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAP2C-AS1 Gene

Publications for RAP2C-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for RAP2C-AS1 Gene

Sources for RAP2C-AS1 Gene

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