Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RAP2C-AS1 Gene

Subcategory (RNA class) for RAP2C-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RAP2C-AS1 Gene

  • RAP2C Antisense RNA 1 2 3 5

External Ids for RAP2C-AS1 Gene

Previous GeneCards Identifiers for RAP2C-AS1 Gene

  • GC0XP131354

Summaries for RAP2C-AS1 Gene

GeneCards Summary for RAP2C-AS1 Gene

RAP2C-AS1 (RAP2C Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAP2C-AS1 Gene

Genomics for RAP2C-AS1 Gene

Regulatory Elements for RAP2C-AS1 Gene

Enhancers for RAP2C-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XF132215 0.2 ENCODE 0.8 +0.7 710 4.4 ARID4B SIN3A FEZF1 DMAP1 ZNF48 YY1 GLIS2 ELK1 ZNF143 KLF7 RAP2C RAP2C-AS1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RAP2C-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for RAP2C-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000482101 453 4801 ARID4B SIN3A FEZF1 DMAP1 YY1 ZNF263 SP3 SP5 MXD4 REST

Genomic Location for RAP2C-AS1 Gene

Chromosome:
X
Start:
132,217,147 bp from pter
End:
132,432,862 bp from pter
Size:
215,716 bases
Orientation:
Plus strand

Genomic View for RAP2C-AS1 Gene

Genes around RAP2C-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAP2C-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAP2C-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAP2C-AS1 Gene

Proteins for RAP2C-AS1 Gene

Post-translational modifications for RAP2C-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RAP2C-AS1 Gene

Domains & Families for RAP2C-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RAP2C-AS1 Gene

Function for RAP2C-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RAP2C-AS1 Gene

Localization for RAP2C-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RAP2C-AS1 Gene

Pathways & Interactions for RAP2C-AS1 Gene

SuperPathways for RAP2C-AS1 Gene

No Data Available

Interacting Proteins for RAP2C-AS1 Gene

Gene Ontology (GO) - Biological Process for RAP2C-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RAP2C-AS1 Gene

Transcripts for RAP2C-AS1 Gene

mRNA/cDNA for RAP2C-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RAP2C-AS1 Gene

No ASD Table

Relevant External Links for RAP2C-AS1 Gene

GeneLoc Exon Structure for
RAP2C-AS1
ECgene alternative splicing isoforms for
RAP2C-AS1

Expression for RAP2C-AS1 Gene

mRNA expression in normal human tissues for RAP2C-AS1 Gene

genes like me logo Genes that share expression patterns with RAP2C-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RAP2C-AS1 Gene

Orthologs for RAP2C-AS1 Gene

Evolution for RAP2C-AS1 Gene

ENSEMBL:
Gene Tree for RAP2C-AS1 (if available)
TreeFam:
Gene Tree for RAP2C-AS1 (if available)

No data available for Orthologs for RAP2C-AS1 Gene

Paralogs for RAP2C-AS1 Gene

No data available for Paralogs for RAP2C-AS1 Gene

Variants for RAP2C-AS1 Gene

Sequence variations from dbSNP and Humsavar for RAP2C-AS1 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs1004121 -- 132,220,947(-) ATTTG(A/G)GCTTT intron-variant, upstream-variant-2KB
rs1005488 -- 132,256,952(-) GGGGA(A/G)GGATA intron-variant
rs10251274 -- 132,245,287(-) ggatt(C/G)cctat intron-variant
rs10284113 -- 132,269,561(+) ggaga(A/G)tcact intron-variant
rs10442488 -- 132,287,585(+) tagat(C/G)tttcc intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RAP2C-AS1 Gene

Variant ID Type Subtype PubMed ID
esv1771993 CNV insertion 17803354
nsv1110873 OTHER inversion 24896259
nsv510860 CNV deletion 20534489

Relevant External Links for RAP2C-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RAP2C-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RAP2C-AS1 Gene

Disorders for RAP2C-AS1 Gene

Relevant External Links for RAP2C-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RAP2C-AS1

No disorders were found for RAP2C-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAP2C-AS1 Gene

Publications for RAP2C-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for RAP2C-AS1 Gene

Sources for RAP2C-AS1 Gene

Content
Loading form....