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Aliases for RAP1BL Gene

Aliases for RAP1BL Gene

  • RAP1B, Member Of RAS Oncogene Family Pseudogene 3
  • Ras-Related Protein Rap-1b-Like Protein 3
  • Rap1B-Retro 3
  • HCG1757335 3
  • AC113404.3 5

External Ids for RAP1BL Gene

Previous GeneCards Identifiers for RAP1BL Gene

  • GC05M075465

Summaries for RAP1BL Gene

GeneCards Summary for RAP1BL Gene

RAP1BL (RAP1B, Member Of RAS Oncogene Family Pseudogene) is a Pseudogene. GO annotations related to this gene include GTP binding.

Additional gene information for RAP1BL Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAP1BL Gene

Genomics for RAP1BL Gene

Regulatory Elements for RAP1BL Gene

Enhancers for RAP1BL Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H075335 1.1 ENCODE 11.8 +835.4 835415 7.8 HDGF PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 POC5 RAP1BL RPS26P26 ANKDD1B GCNT4 POLK GC05P075337 ENSG00000271815
GH05H076174 1.2 Ensembl ENCODE 0.7 -1.4 -1428 1.9 HDAC1 PKNOX1 ATF1 TBL1XR1 SIN3A ZBTB40 BATF RAD21 TCF12 GATA2 LOC105379041 SV2C LOC100132039 SAP18P1 RAP1BL GC05M076242
GH05H076180 1.2 Ensembl ENCODE 0.4 -7.0 -7047 1.9 HDAC1 PKNOX1 ATF1 SIN3A BATF ZNF766 GATA2 FOS ATF7 ETV6 SV2C LOC105379041 LOC100132039 SAP18P1 RAP1BL GC05M076242
GH05H076197 0.4 ENCODE 0.3 -22.7 -22737 0.2 PKNOX1 TAL1 LOC105379041 SV2C LOC100132039 SAP18P1 RAP1BL GC05M076242
GH05H076198 0.4 ENCODE 0.3 -22.9 -22937 0.2 PKNOX1 TAL1 LOC105379041 SV2C LOC100132039 SAP18P1 RAP1BL GC05M076242
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RAP1BL on UCSC Golden Path with GeneCards custom track

Promoters for RAP1BL Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000182715 54 201

Genomic Locations for RAP1BL Gene

Genomic Locations for RAP1BL Gene
chr5:76,170,085-76,174,354
(GRCh38/hg38)
Size:
4,270 bases
Orientation:
Minus strand
chr5:75,465,910-75,470,179
(GRCh37/hg19)

Genomic View for RAP1BL Gene

Genes around RAP1BL on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAP1BL Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAP1BL Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAP1BL Gene

Proteins for RAP1BL Gene

Post-translational modifications for RAP1BL Gene

No Post-translational modifications

No data available for DME Specific Peptides for RAP1BL Gene

Domains & Families for RAP1BL Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RAP1BL Gene

Function for RAP1BL Gene

Phenotypes From GWAS Catalog for RAP1BL Gene

Gene Ontology (GO) - Molecular Function for RAP1BL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003924 GTPase activity IEA --
GO:0005525 GTP binding IEA --
genes like me logo Genes that share ontologies with RAP1BL: view
genes like me logo Genes that share phenotypes with RAP1BL: view

Animal Model Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RAP1BL Gene

Localization for RAP1BL Gene

Gene Ontology (GO) - Cellular Components for RAP1BL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005829 cytosol IEA --
GO:0005886 plasma membrane IEA --
genes like me logo Genes that share ontologies with RAP1BL: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for RAP1BL Gene

Pathways & Interactions for RAP1BL Gene

SuperPathways for RAP1BL Gene

No Data Available

Interacting Proteins for RAP1BL Gene

Gene Ontology (GO) - Biological Process for RAP1BL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
genes like me logo Genes that share ontologies with RAP1BL: view

No data available for Pathways by source and SIGNOR curated interactions for RAP1BL Gene

Drugs & Compounds for RAP1BL Gene

No Compound Related Data Available

Transcripts for RAP1BL Gene

mRNA/cDNA for RAP1BL Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RAP1BL Gene

No ASD Table

Relevant External Links for RAP1BL Gene

GeneLoc Exon Structure for
RAP1BL

Expression for RAP1BL Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RAP1BL Gene

genes like me logo Genes that share expression patterns with RAP1BL: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RAP1BL Gene

Orthologs for RAP1BL Gene

Evolution for RAP1BL Gene

ENSEMBL:
Gene Tree for RAP1BL (if available)
TreeFam:
Gene Tree for RAP1BL (if available)

No data available for Orthologs for RAP1BL Gene

Paralogs for RAP1BL Gene

genes like me logo Genes that share paralogs with RAP1BL: view

No data available for Paralogs for RAP1BL Gene

Variants for RAP1BL Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for RAP1BL Gene

Disorders for RAP1BL Gene

Relevant External Links for RAP1BL

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RAP1BL

No disorders were found for RAP1BL Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAP1BL Gene

Publications for RAP1BL Gene

  1. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 60
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin EL … Gygi SP (Cell 2015) 3 60
  3. The P-body component USP52/PAN2 is a novel regulator of HIF1A mRNA stability. (PMID: 23398456) Bett JS … Hay RT (The Biochemical journal 2013) 3 60
  4. Retrotransposition and mutation events yield Rap1 GTPases with differential signalling capacity. (PMID: 20170508) Zemojtel T … Zwartkruis FJ (BMC evolutionary biology 2010) 3 60
  5. HRap1B-retro: a novel human processed rap1B gene blurs the picture? (PMID: 16307016) Zemojtel T … Zwartkruis FJ (Leukemia 2006) 3 60

Products for RAP1BL Gene

Sources for RAP1BL Gene

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