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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

RAP1A Gene

protein-coding   GIFtS: 68
GCID: GC01P112084

RAP1A, member of RAS oncogene family

 Explore 44 diseases affiliated with
RAP1A via our new
 Human Malady Compendium 
Biological research products
for RAP1A
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
RAP1A, Member Of RAS Oncogene Family1 2     GTP-Binding Protein Smg P21A2 3
KREV12 3 5     Ras-Related Protein Krev-12 3
KREV-11 2     RAP12
SMGP211 2     Ras-Related Protein Rap-1A2
C21KG2 3     RAS-Related Protein RAP1A2
G-22K2 3     

External Ids:    HGNC: 98551   Entrez Gene: 59062   Ensembl: ENSG000001164737   OMIM: 1795205   UniProtKB: P628343   

Export aliases for RAP1A gene to outside databases

Previous GC identifers: GC01P112501 GC01P110956 GC01P111186 GC01P111383 GC01P111796 GC01P111886 GC01P111963 GC01P110105


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for RAP1A:
The product of this gene belongs to the family of RAS-related proteins. These proteins share approximately 50% amino
acid identity with the classical RAS proteins and have numerous structural features in common. The most striking
difference between RAP proteins and RAS proteins resides in their 61st amino acid: glutamine in RAS is replaced by
threonine in RAP proteins. The product of this gene counteracts the mitogenic function of RAS because it can interact
with RAS GAPs and RAF in a competitive manner. Two transcript variants encoding the same protein have been identified
for this gene. (provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: RAP1A_HUMAN, P62834
Function: Induces morphological reversion of a cell line transformed by a Ras oncogene. Counteracts the mitogenic
function of Ras, at least partly because it can interact with Ras GAPs and RAF in a competitive manner

Gene Wiki entry for RAP1A


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000001.10  NC_018912.1  NT_032977.9  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the RAP1A gene promoter:
         HSF1short   HSF1 (long)   FOXD3   Evi-1   RORalpha2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): RAP1A promoter sequence
   Search SABiosciences Chromatin IP Primers for RAP1A

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RAP1A


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1p13.3   Ensembl cytogenetic band:  1p13.2   HGNC cytogenetic band: 1p13.3

RAP1A Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RAP1A gene location

GeneLoc information about chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01P112084:  view genomic region     (about GC identifiers)

Start:
112,084,840 bp from pter      End:
112,259,313 bp from pter
Size:
174,474 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: RAP1A_HUMAN, P62834 (See protein sequence)
Recommended Name: Ras-related protein Rap-1A precursor  
Size: 184 amino acids; 20987 Da
Subunit: In its GTP-bound form interacts with PLCE1 and RADIL. Interacts with SGSM1, SGSM2 and SGSM3
Subcellular location: Cell membrane; Lipid-anchor
Sequence caution: Sequence=CAB55685.2; Type=Erroneous gene model prediction;
3 PDB 3D structures from and Proteopedia for RAP1A:
1C1Y (3D)        1GUA (3D)        3KUC (3D)    
Secondary accessions: P10113

Explore the universe of human proteins at neXtProt for RAP1A: NX_P62834

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_P62834

  • RAP1A Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (2 alternative transcripts): 
    NP_001010935.1  NP_002875.1  

    ENSEMBL proteins: 
     ENSP00000348786   ENSP00000396741   ENSP00000358723   ENSP00000394318   ENSP00000443009  
    Reactome Protein details: P62834
    Human Recombinant Protein Products: 
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    Uscn Proteins for RAP1A

    Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005829cytosol TAS--
    GO:0005886plasma membrane TAS--
    GO:0016020membrane ----
    GO:0032045guanyl-nucleotide exchange factor complex IEA--


    RAP1A for ontologies           About GeneDecksing



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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    RAP1A for domains           About GeneDecksing

    3 InterPro domains/families:
     IPR005225 Small_GTP-bd_dom
     IPR001806 Small_GTPase
     IPR020849 Small_GTPase_Ras

    Graphical View of Domain Structure for InterPro Entry P62834

    ProtoNet protein and cluster: P62834

    1 Blocks protein family: IPB003577 Ras small GTPase

    UniProtKB/Swiss-Prot: RAP1A_HUMAN, P62834
    Similarity: Belongs to the small GTPase superfamily. Ras family


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: RAP1A_HUMAN, P62834
    Function: Induces morphological reversion of a cell line transformed by a Ras oncogene. Counteracts the mitogenic
    function of Ras, at least partly because it can interact with Ras GAPs and RAF in a competitive manner
    Enzyme regulation: Activated by guanine nucleotide-exchange factors (GEF) EPAC and EPAC2 in a cAMP-dependent manner,
    and GFR

         Genatlas biochemistry entry for RAP1A:
    RAP1A,Ras oncogene superfamily member (Krev1),morphologic reversion of ras-transformed cells

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    hsa-miR-520f hsa-miR-502-3p hsa-miR-877* hsa-miR-149 hsa-miR-3613-3p hsa-miR-92b hsa-miR-1298 hsa-miR-130a*
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    Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003924GTPase activity IEA--
    GO:0005515protein binding IPI15569673
    GO:0005525GTP binding IEA--
    GO:0017016Ras GTPase binding IEA--


    RAP1A for ontologies           About GeneDecksing


    2 GenomeRNAi human phenotypes for RAP1A:
     Synthetic lethal with c-Myc af  Synthetic lethal with imatinib 

    Animal Models:
         Mouse knock-out Rap1atm1Laaq for RAP1A
         7 MGI mutant phenotypes (inferred from 3 alleles(MGI details for Rap1a):
     behavior/neurological  cardiovascular system  cellular  hematopoietic system  immune system 
     mortality/aging  nervous system 

    RAP1A for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/59 super-pathways (see all 59About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1G-protein signaling_G-Protein alpha-i signaling cascades
    G-protein signaling_G-Protein alpha-i signaling cascades1.00
    Development Beta-adrenergic receptors regulation of ERK0.55
    G-protein signaling G-Protein alpha-i signaling cascades1.00
    G-protein signaling_G-Protein alpha-s signaling cascades0.44
    Development_Beta-adrenergic receptors regulation of ERK0.55
    G-protein signaling G-Protein alpha-s signaling cascades0.44
    2Development HGF signaling pathway
    Development HGF signaling pathway1.00
    Development Neurotrophin family signaling0.45
    Development_HGF signaling pathway0.78
    Signaling of Hepatocyte Growth Factor Receptor0.35
    Development_Neurotrophin family signaling0.45
    Neurotrophin signaling pathway0.20
    3Development Angiotensin activation of ERK
    Development_ACM2 and ACM4 activation of ERK0.74
    Development G-Proteins mediated regulation MARK-ERK signaling0.66
    Development ACM2 and ACM4 activation of ERK0.74
    Development_EDNRB signaling0.54
    Development_G-Proteins mediated regulation MARK-ERK signaling0.66
    Development EDNRB signaling0.54
    4Development_A2B receptor- action via G-protein alpha s
    Development_A2B receptor- action via G-protein alpha s1.00
    Development_A2A receptor signaling0.43
    Development A2B receptor: action via G-protein alpha s1.00
    Development A2A receptor signaling0.43
    5GRB2:SOS provides linkage to MAPK signaling for Intergrins
    GRB2:SOS provides linkage to MAPK signaling for Intergrins 1.00
    SHC1 dissociates from integrin alphaIIb beta30.41
    p130Cas linkage to MAPK signaling for integrins0.76
    SHC1 bound to integrin alphaIIb beta3 is phosphorylated somehow0.41

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    5/24 EMD Millipore Pathways for RAP1A (see all 24)
        Cytoskeleton remodeling FAK signaling
    G-protein signaling G-Protein alpha-12 signaling pathway
    G-protein signaling Ras family GTPases in kinase cascades (scheme)
    G-protein signaling G-Protein alpha-s signaling cascades
    Development G-Proteins mediated regulation MARK-ERK signaling

    5/20 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for RAP1A (see all 20)
        MAPK Signaling
    PKA Signaling
    Molecular Mechanisms of Cancer
    Relaxin Pathway
    TRKA Signaling

    2 Cell Signaling Technology (CST) Pathways for RAP1A
        Cytoskeletal Signaling
    Adhesion

    5/24 GeneGo (Thomson Reuters) Pathways for RAP1A (see all 24)
        Development A2A receptor signaling
    Signal transduction cAMP signaling
    G-protein signaling G-Protein alpha-i signaling cascades
    G-protein signaling TC21 regulation pathway
    Development Beta-adrenergic receptors regulation of ERK

    5/16 BioSystems Pathways for RAP1A (see all 16
        Integrin-mediated cell adhesion
    Focal Adhesion
    Integrated Breast Cancer Pathway
    Serotonin Receptor 4/6/7 and NR3C Signaling
    MAPK signaling pathway

    5/23        Reactome Pathways for RAP1A (see all 23)
        Metabolism
    Regulation of Insulin Secretion
    GRB2:SOS provides linkage to MAPK signaling for Intergrins
    Signal Transduction
    SHC1 bound to integrin alphaIIb beta3 is phosphorylated somehow

    1 PharmGKB Pathway for RAP1A
        Bisphosphonate Pathway, Pharmacodynamics

    5/8         Kegg Pathways  (Kegg details for RAP1A) (see all 8):
        MAPK signaling pathway
    Chemokine signaling pathway
    Focal adhesion
    Leukocyte transendothelial migration
    Long-term potentiation


    RAP1A for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for RAP1A

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/85 Interacting proteins for RAP1A (P628341, 2, 3 ENSP000003487864) via UniProtKB, MINT, STRING, and/or I2D (see all 85)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    RAF1P040491, 2, 3, ENSP000002518494EBI-1047696,EBI-365996 MINT-24923 I2D: score=6 STRING: ENSP00000251849
    HSPA1AP081073, ENSP000003648024I2D: score=2 STRING: ENSP00000364802
    BIN1O004993, ENSP000003167794I2D: score=3 STRING: ENSP00000316779
    FASP254453, ENSP000003479794I2D: score=3 STRING: ENSP00000347979
    PPP2R1AP301533, ENSP000003248044I2D: score=3 STRING: ENSP00000324804
    About this table

    Gene Ontology (GO): 5/11 biological process terms (GO ID links to tree view) (see all 11):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000186activation of MAPKK activity TAS--
    GO:0006112energy reserve metabolic process TAS--
    GO:0006184GTP catabolic process ----
    GO:0007165signal transduction TAS2642744
    GO:0007264small GTPase mediated signal transduction IEA--


    RAP1A for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    RAP1A for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
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    Browse Tocris compounds for RAP1A

    2 HMDB Compounds for RAP1A    About this table
    CompoundSynonyms CAS #PubMed Ids
    Cyclic AMPCyclic AMP (see all 19)60-92-4--
    Guanosine triphosphate5'-GTP (see all 10)86-01-1--
    10/44 Novoseek chemical compound relationships for RAP1A gene (see all 44)    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    gtp 71.2 55 12473665 (4), 2160589 (3), 10608844 (2), 1939245 (2) (see all 32)
    gdp 66.9 18 10608844 (2), 2110451 (2), 11292831 (1), 20170508 (1) (see all 13)
    guanosine 59.2 7 15613546 (1), 17954608 (1), 18362184 (1), 16043520 (1) (see all 6)
    forskolin 56.6 18 10908723 (4), 15345481 (1), 15601837 (1), 12464615 (1) (see all 12)
    cyclic amp 53.7 45 16507992 (6), 15546918 (3), 15591041 (3), 14985123 (3) (see all 16)
    geranylgeranyl pyrophosphate 53.2 2 12427032 (1), 17640631 (1)
    tyrosine 52.9 33 16170364 (2), 18789886 (2), 15982636 (2), 16182283 (2) (see all 22)
    mevalonate 46.3 3 12427032 (2), 11788600 (1), 17640631 (1)
    perillyl alcohol 44.2 1 9296357 (1)
    guanine 35.4 5 17383543 (1), 16681758 (1), 17993260 (1), 18039662 (1) (see all 5)

    Search CenterWatch for drugs/clinical trials and news about RAP1A 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
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    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for RAP1A gene (2 alternative transcripts): 
    NM_001010935.1  NM_002884.2  

    Unigene Cluster for RAP1A:

    RAP1A, member of RAS oncogene family
    Hs.190334  [show with all ESTs]
    Unigene Representative Sequence: NM_001010935
    6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000356415 ENST00000433097 ENST00000369709(uc001ebl.3) ENST00000494982
    ENST00000436150(uc001ebi.3 uc001ebk.3) ENST00000545460

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    hsa-miR-520f hsa-miR-502-3p hsa-miR-877* hsa-miR-149 hsa-miR-3613-3p hsa-miR-92b hsa-miR-1298 hsa-miR-130a*
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    Inhib. RNA
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    Additional cDNA sequence: 

    AB451235.1 AB451360.1 AF493912.1 AK293044.1 BC014086.2 BT019666.1 M22995.1 X12533.1 

    13 DOTS entries:

    DT.70101779  DT.100800672  DT.451930  DT.100800671  DT.121382734  DT.100800680  DT.95243672  DT.100028709 
    DT.99996642  DT.100800674  DT.100800676  DT.120749171  DT.75108365 

    24/389 AceView cDNA sequences (see all 389):

    BI856433 T53557 AV659417 CR597469 AA383199 AA628171 BM759422 BI493639 
    BG612316 AA059264 X12533 R37585 BQ269560 BU150941 CA414041 BU677958 
    CA421524 AA365910 CA774853 AA437308 BQ009973 CR623933 AF493912 CD365553 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    RAP1A expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: ATCCTCCCTA

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See RAP1A Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for RAP1A

    SOURCE GeneReport for Unigene cluster: Hs.190334
        SABiosciences Expression via Pathway-Focused PCR Arrays including RAP1A: 
              Telomeres & Telomerase in human mouse rat
              EGF / PDGF Signaling Pathway in human mouse rat
              Focal Adhesions in human mouse rat

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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RAP1A

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for RAP1A gene from 6/26 species (see all 26)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves RAP1A1 RAP1A, member of RAS oncogene family 91.49(n)
    99.46(a)
      419867  XM_417994.2  XP_417994.1 
    lizard
    (Anolis carolinensis)
    Reptilia RAP1A6
    --
    99(a)
    1 ↔ 1
    4(126561165-126584626)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.238022 Xenopus laevis transcribed sequence with strong similarity more 85.5(n)    CD325556.1 
    zebrafish
    (Danio rerio)
    Actinopterygii wufc66g062 Danio rerio, clone IMAGE5604882, mRNA 80.69(n)    BC049419.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta R1 , 3 photoreceptor commitment (sensu Drosophila)
    GTP more3
    Roughened1
    89(a)
    (best of 2)3
    72.86(n)1
    87.43(a)1
      3 62B73
    382441  NM_001202094.11  NP_001189023.11 
    worm
    (Caenorhabditis elegans)
    Secernentea rrp-13
    rap-11
    ras protein3
    Protein RAP-11
    89(a)
    (best of 3)3
    73.96(n)1
    89.94(a)1
      IV(8916911-8918914)3
    1777091  NM_069148.31  NP_501549.11 


    ENSEMBL Gene Tree for RAP1A (if available)
    TreeFam Gene Tree for RAP1A (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for RAP1A gene
    RAP2C2  RASL10B2  DIRAS12  RAP1B2  RASD22  RAP2A2  RAP2B2  RASD12  
    DIRAS22  RASL10A2  DIRAS32  
    18/105 SIMAP similar genes for RAP1A using alignment to 2 protein entries:     RAP1A_HUMAN (see all proteins) (see all similar genes):
    RAP1B    c-bas/has    RAP2A    DKFZp547A0616    HRAS    RAP2B
    RAP2C    RALA    NRAS    DIRAS1    KRAS    RALB
    MRAS    RRAS2    DIRAS2    RIT2    RIT1    RAB10

    RAP1A for paralogs           About GeneDecksing


    2 Pseudogenes.org Pseudogenes for RAP1A
    PGOHUM00000248230 PGOHUM00000250812


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/1752 NCBI SNPs in RAP1A are shown (see all 1752    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 1 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1821052811,2
    --112160434(+) GCCGAA/GGCGGG 2 -- us2k10--------
    rs1867528761,2
    --112160436(+) CGAGGA/CGGGTG 2 -- us2k10--------
    rs1896237361,2
    --112160465(+) ATTCGA/CGACCA 2 -- us2k10--------
    rs568620441,2
    C--112160664(+) AAAAA-/ATCATT 2 -- us2k11Minor allele frequency- A:0.50CSA 2
    rs1508678871,2
    --112160697(+) AAAATC/GAGAAA 2 -- us2k10--------
    rs729831951,2
    C,--112160731(+) CCTCCC/TTTGAT 2 -- us2k12Minor allele frequency- T:0.06WA 120
    rs1393605851,2
    --112160745(+) AAGTAC/TCTCTC 2 -- us2k10--------
    rs795752211,2
    F,--112160825(+) CCTCCC/TATCCT 2 -- us2k11Minor allele frequency- T:0.12WA 118
    rs1156093351,2
    F,--112160963(+) CAGTAT/GCTGAT 2 -- us2k12Minor allele frequency- G:0.10WA NA 238
    rs121225111,2
    C,F,--112160983(+) cactcT/Cctcct 2 -- us2k1 trp38Minor allele frequency- C:0.20NA WA CSA 250

    HapMap Linkage Disequilibrium report for RAP1A (112084840 - 112259313 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 2 variations for RAP1A
         2 CNVs: 74647 84474

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    RAP1A for disorders           About GeneDecksing

    OMIM gene information: 179520    OMIM disorders: --

    20/44 diseases for RAP1A (see all 44):    About MalaCards
    leukocyte adhesion deficiency, type iii    glanzmann's thrombasthenia    thrombasthenia    tuberous sclerosis
    myeloproliferative disorder    myeloid leukemia    cervical squamous cell carcinoma    squamous cell carcinoma
    babesiosis    bipolar disorder    myelodysplastic syndrome    pulmonary emphysema
    papillary thyroid carcinoma    rheumatoid arthritis    acute myeloid leukemia    follicular adenoma
    emphysema    azoospermia    renal cell carcinoma    thyroid carcinoma

    10/24 Novoseek disease relationships for RAP1A gene (see all 24)    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    tuberous sclerosis 50.3 2 7608212 (1), 12469204 (1)
    thyroid papillary carcinoma 29.8 2 18948674 (1)
    glanzmann thrombasthenia 25.9 1 10629034 (1)
    tumors 12.5 37 12469204 (3), 8084835 (2), 8890957 (2), 2142634 (1) (see all 21)
    myeloid leukemia 11.7 2 15982636 (1), 18180377 (1)
    granulomatous disease chronic 11.5 1 9731072 (1)
    myelodysplastic syndromes 5.94 1 16118622 (1)
    myeloid leukemia chronic 1.57 1 16076873 (1)
    melanoma 1.05 24 16186804 (6), 19147557 (4), 16912161 (3), 20484042 (1)
    azoospermia 0.389 1 15064832 (1)

    Human Genome Epidemiology (HuGE) Navigator: RAP1A (2 documents)

    Export disorders for RAP1A gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for RAP1A gene, integrated from 9 sources (see all 413):
    (articles sorted by number of sources associating them with RAP1A)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The COOH-terminal domain of the Rap1A (Krev-1) protein is isoprenylated and supports transformation by an H-Ras:Rap1A chimeric protein. (PubMed id 1899909)1, 2, 9 Buss J.E.... Der C.J. (1991)
    2. The 2.2 A crystal structure of the Ras-binding domain of the serine/threonine kinase c-Raf1 in complex with Rap1A and a GTP analogue. (PubMed id 7791872)1, 2, 9 Nassar N....Wittinghofer A. (1995)
    3. The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)1, 2 Gregory S.G.... Bentley D.R. (2006)
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    5. Differential roles of Ras and Rap1 in growth factor-dependent activation of phospholipase C epsilon. (PubMed id 12444546)1, 2 Song C.... Kataoka T. (2002)
    6. Regulation of a novel human phospholipase C, PLCepsilon, through membrane targeting by Ras. (PubMed id 11022048)1, 2 Song C.... Kataoka T. (2001)
    7. Ras/Rap effector specificity determined by charge reversal. (PubMed id 8756332)1, 2 Nassar N....Wittinghofer A. (1996)
    8. Purification, identification, and characterization of two GTP-binding proteins with molecular weights of 25,000 and 21,000 in human platelet cytosol. One is the rap1/smg21/Krev-1 protein and the other is a novel GTP-binding protein. (PubMed id 2507536)1, 2 Nagata K....Nozawa Y. (1989)
    9. Identification of a platelet Mr 22,000 GTP-binding protein as the novel smg-21 gene product having the same putative effector domain as the ras gene products. (PubMed id 3144274)1, 2 Ohmori T.... Takai Y. (1988)
    10. Human cDNAs rap1 and rap2 homologous to the Drosophila gene Dras3 encode proteins closely related to ras in the 'effector' region. (PubMed id 3045729)1, 2 Pizon V.... Tavitian A. (1988)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
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      Query String
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      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 5906 HGNC: 9855 AceView: RAP1A Ensembl:ENSG00000116473 euGenes: HUgn5906
    ECgene: RAP1A Kegg: 5906 H-InvDB: RAP1A

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for RAP1A Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for RAP1A Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for RAP1A gene:
    Search GeneIP for patents involving RAP1A

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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