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Aliases & Descriptions for RAP1A
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases C21KG 3 G-22K 3 KREV-1 1 , 2 KREV1 2 , 3 , 5 OTTHUMP00000013740 2 OTTHUMP00000013741 2 OTTHUMP00000059089 2 RAP1 2 SMGP21 1 , 2
Descriptions GTP-binding protein smg-p21A 3 RAP1A, member of RAS oncogene family 2 RAS-related protein RAP1A 2 Ras-related protein Krev-1 2 , 3 Ras-related protein Rap-1A 2
Search outside databases for aliases for RAP1A genePrevious GC identifers: GC01P112501 GC01P110956 GC01P111186 GC01P111383 GC01P111796
Summaries for RAP1A (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for RAP1A : The product of this gene belongs to the family of RAS-related proteins. These proteins shareapproximately 50% amino acid identity with the classical RAS proteins and have numerous structuralfeatures in common. The most striking difference between RAP proteins and RAS proteins resides intheir 61st amino acid: glutamine in RAS is replaced by threonine in RAP proteins. The product ofthis gene counteracts the mitogenic function of RAS because it can interact with RAS GAPs and RAFin a competitive manner. Two transcript variants encoding the same protein have been identifiedfor this gene. [provided by RefSeq] UniProtKB/Swiss-Prot: RAP1A_HUMAN, P62834 Function : Induces morphological reversion of a cell line transformed by a Ras oncogene. Counteractsthe mitogenic function of Ras, at least partly because it can interact with Ras GAPs and RAF in acompetitive manner
Gene Wiki entry for RAP1A
Genomic Location for RAP1A
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the RAP1A gene Entrez Gene cytogenetic band: 1p13.3 Ensembl cytogenetic band: 1p13.2 HGNC cytogenetic band: 1p13.3 RAP1A Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01P111886:
(about GC identifiers )
Start:
111,886,363 bp from pter
End:
112,057,624 bp from pter
Size:
171,262 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000001.9 NT_019273.18 Proteins for RAP1A
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: RAP1A_HUMAN, P62834 (See
protein sequence )Recommended Name: Ras-related protein Rap-1A precursor Size : 184 amino acids; 20987 Da
Subunit : In its GTP-bound form interacts with PLCE1 and RADIL. Interacts with SGSM1, SGSM2 andSGSM3
Subcellular location : Cell membrane; Lipid-anchor
Sequence caution : Sequence=CAB55685.2; Type=Erroneous gene model prediction;
PDB structure from and Proteopedia : 1C1Y (3D)
 1GUA (3D)
 
Secondary accessions : P10113
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_001010935.1 NP_002875.1 ENSEMBL proteins: ENSP00000358723 ENSP00000348786 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 4 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for RAP1A: Assays for RAP1A:
Protein
Domains/ Families for RAP1A(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P62834 ProtoNet protein and cluster: P62834
1 Blocks protein family : IPB003577 Ras small GTPase UniProtKB/Swiss-Prot: RAP1A_HUMAN, P62834 Similarity : Belongs to the small GTPase superfamily. Ras family
Gene Function for RAP1A
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
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Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
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Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
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SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001010935 Applied Biosystems Silencer ® siRNAs for RAP1A Sigma-Aldrich siRNA and siRNA Panels for RAP1A Sigma-Aldrich shRNA for RAP1A Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001010935                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001010935                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001010935  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001010935 UniProtKB/Swiss-Prot: RAP1A_HUMAN, P62834 Function : Induces morphological reversion of a cell line transformed by a Ras oncogene. Counteractsthe mitogenic function of Ras, at least partly because it can interact with Ras GAPs and RAF in acompetitive manner Enzyme regulation : Activated by guanine nucleotide-exchange factors (GEF) EPAC and EPAC2 in acAMP-dependent manner, and GFR
Genatlas biochemistry entry for RAP1A :RAP1A,Ras oncogene superfamily member (Krev1),morphologic reversion of ras-transformed cells
6 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Rap1a) :5 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for RAP1A
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/14 Sigma-Aldrich "Your Favorite Gene" Pathways for RAP1A (Your Favorite Gene powered by Ingenuity) (see all 14
) Gene Network CentralTM Interacting Genes and Proteins Network for RAP1A 5/103 Interacting proteins for RAP1A (ENSP00000348786 3 P62834 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 103
)About this table 2 Gene Ontology (GO) biological process terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0007264 small GTPase mediated signal transduction
IEA -- GO:0045786 negative regulation of cell cycle
IEA --
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Drugs & Compounds for RAP1A (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for RAP1A
Browse Tocris compounds for RAP1A 10/24 Novoseek chemical compound relationships for RAP1A gene (see all 24
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
gtp
70.31
49
12473665 (4), 2160589 (3), 10608844 (2), 1939245 (2) (see all 28 )
gdp
66.65
16
10608844 (2), 2110451 (2), 11292831 (1), 1939245 (1) (see all 11 )
guanosine
60.72
7
15613546 (1), 17954608 (1), 18362184 (1), 16043520 (1) (see all 6 )
geranylgeranyl pyrophosphate
55.22
2
12427032 (1), 17640631 (1)
cyclic amp
53.96
42
16507992 (6), 15546918 (3), 15591041 (3), 14985123 (3) (see all 15 )
forskolin
53.90
18
10908723 (4), 15345481 (1), 15601837 (1), 12464615 (1) (see all 12 )
tyrosine
53.34
32
16170364 (2), 18789886 (2), 15982636 (2), 16182283 (2) (see all 21 )
mevalonate
48.17
3
12427032 (2), 11788600 (1), 17640631 (1)
calcium
28.11
44
9789079 (4), 9029146 (4), 11278472 (3), 9731072 (2) (see all 24 )
asparagine
23.51
3
15312909 (1), 17300802 (1)
About this table
Transcripts for RAP1A(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001010935 Sigma-Aldrich siRNA and siRNA Panels for RAP1A Sigma-Aldrich shRNA for RAP1A Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001010935 NM_002884
REFSEQ mRNAs for RAP1A gene (2 alternative transcripts): NM_001010935.1 NM_002884.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001010935 NM_002884
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001010935                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001010935                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001010935  
Additional cDNA sequence: AB451235.1 AB451360.1 AF493912.1 AK293044.1 BC014086.2 BT019666.1 CR597469.1 CR623933.1 M22995.1 X12533.1
14 DOTS entries : DT.70101779 DT.100800672 DT.451930 DT.121382734 DT.100800671 DT.99996642 DT.100800680 DT.95243672 DT.100028709 DT.102831457 DT.100800674 DT.100800676 DT.120749171 DT.75108365
24/389 AceView cDNA sequences (see all 389
):BQ722841 BX111098 CD108761 CA774853 CR597469 AF493912 BU184591 BQ694744 AA365910 AA628171 T53557 BQ638200 AA021557 BM752342 BQ009973 AA741314 CD517622 BG057240 CA414041 AA383199 X12533 BU167449 BF447109 BG231927
highest scoring ESTs for RAP1A :M22995 AA100932 AA102393 AA193427 AA256183 AA279680 AA279804 AA361711 AA401232 AA436973
Unigene Cluster for RAP1A: RAP1A, member of RAS oncogene family Hs.190334 [show with all ESTs ] Unigene Representative Sequence: NM_001010935 GeneLoc Exon Structure 2 Ensembl transcripts including schematic representations : ENST00000369709
ENST00000356415
Expression for RAP1A
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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RAP1A expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for RAP1A 1 / 2 / 3
6 probe-sets matching RAP1A gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: ATCCTCCCTASOURCE GeneReport for Unigene cluster: Hs.190334 Expression variation in blood from EXPOLDB for RAP1A
Orthologs for RAP1A
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for RAP1A gene from 5/11 species (see all 11
)
About this table Species with no ortholog for RAP1A ENSEMBL Gene Tree for RAP1A Paralogs for RAP1A (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for RAP1A gene ENSG00000176276 2 RAP1B 2 ENSG00000214405 2
SNPs/Variants for RAP1A (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for RAP1A (up to first 250kb)
Disorders & Mutations for RAP1A
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 179520 10/23 Novoseek disease relationships for RAP1A gene (see all 23
)
About this table Human Genome Epidemiology Navigator: RAP1A (1 document)
Medical News for RAP1A (Possibly Related Articles in
Doctor's Guide )
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--
Publications for RAP1A (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/344 PubMed articles for RAP1A gene (see all 344
): The COOH-terminal domain of the Rap1A (Krev-1) protein is isoprenylated and supports transformation by an H-Ras:Rap1A chimeric protein. (PubMed id 1899909) 1, 3, 4 Buss J.E.... Der C.J. (1991) The 2.2 A crystal structure of the Ras-binding domain of the serine/threonine kinase c-Raf1 in complex with Rap1A and a GTP analogue. (PubMed id 7791872) 1, 3, 4 Nassar N....Wittinghofer A. (1995) The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414) 3, 4 Gregory S.G.... Bentley D.R. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Differential roles of Ras and Rap1 in growth factor-dependent activation of phospholipase C epsilon. (PubMed id 12444546) 3, 4 Song C.... Kataoka T. (2002) Regulation of a novel human phospholipase C, PLCepsilon, through membrane targeting by Ras. (PubMed id 11022048) 3, 4 Song C....Kataoka T. (2001) Ras/Rap effector specificity determined by charge reversal. (PubMed id 8756332) 3, 4 Nassar N....Wittinghofer A. (1996) Purification, identification, and characterization of two GTP-binding proteins with molecular weights of 25,000 and 21,000 in human platelet cytosol. One is the rap1/smg21/Krev-1 protein and the other is a novel GTP-binding protein. (PubMed id 2507536) 3, 4 Nagata K....Nozawa Y. (1989) Identification of a platelet Mr 22,000 GTP-binding protein as the novel smg-21 gene product having the same putative effector domain as the ras gene products. (PubMed id 3144274) 3, 4 Ohmori T.... Takai Y. (1988) Human cDNAs rap1 and rap2 homologous to the Drosophila gene Dras3 encode proteins closely related to ras in the 'effector' region. (PubMed id 3045729) 3, 4 Pizon V.... Tavitian A. (1988)
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Genome Databases showing RAP1A
(According to
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euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Specialized Databases showing RAP1A (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for RAP1A (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Antibodies & Assays for RAP1A   (Rap1)
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