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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

RANBP6 Gene

protein-coding GIFtS: 49
GCID: GC09M006002

RAN binding protein 6

Explore 1 disease affiliated with
RANBP6 via

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 3

Aliases
RAN Binding Protein 6¹ ²
Ran-Binding Protein 6²
Ran-GTP Binding Protein²
RanBP6³

External Ids:	HGNC: 9851¹	Entrez Gene: 26953²	Ensembl: ENSG00000137040⁷	UniProtKB: O60518³

ORGUL members:
	NONCODE:n406580

Export aliases for RANBP6 gene to outside databases

Previous GC identifers: GC12M009341 GC12M009781 GC09M006001

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: RNBP6_HUMAN, O60518

Function: May function in nuclear protein import as nuclear transport receptor

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000009.11 NC_018920.1 NT_008413.18

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the RANBP6 gene promoter:
MZF-1 AhR CHOP-10 Pax-5 C/EBPalpha
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: RANBP6 promoter sequence

Search SABiosciences Chromatin IP Primers for RANBP6

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RANBP6

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 9p24.1 Ensembl cytogenetic band: 9p24.1 HGNC cytogenetic band: 9p24.1

RANBP6 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RANBP6 gene location

GeneLoc information about chromosome 9 GeneLoc Exon Structure

GeneLoc location for GC09M006002: view genomic region (about GC identifiers)

Start:	6,011,019 bp from pter	End:	6,015,640 bp from pter
Size:	4,622 bases	Orientation:	minus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: RNBP6_HUMAN, O60518 (See protein sequence)

Recommended Name: Ran-binding protein 6

Size: 1105 amino acids; 124714 Da

Subcellular location: Cytoplasm (By similarity). Nucleus (By similarity)

Sequence caution: Sequence=CAD97647.1; Type=Erroneous initiation;

Secondary accessions: Q5T7X4 Q7Z3V2 Q96E78

Explore the universe of human proteins at neXtProt for RANBP6: NX_O60518

Post-translational modifications:

View modification sites using PhosphoSitePlus²

View neXtProt modification sites for NX_O60518

RANBP6 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins (3 alternative transcripts):

NP_001230131.1 NP_001230132.1 NP_036548.1

ENSEMBL proteins:

ENSP00000259569

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Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005634	nucleus	IEA	--
GO:0005737	cytoplasm	IEA	--

RANBP6 for ontologies About GeneDecksing

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(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

RANBP6 for domains About GeneDecksing

3 InterPro domains/families:

IPR011989 ARM-like

IPR000357 HEAT

IPR016024 ARM-type_fold

Graphical View of Domain Structure for InterPro Entry O60518

ProtoNet protein and cluster: O60518

UniProtKB/Swiss-Prot: RNBP6_HUMAN, O60518

Similarity: Belongs to the importin beta family

Similarity: Contains 7 HEAT repeats

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Function Summary:

UniProtKB/Swiss-Prot: RNBP6_HUMAN, O60518

Function: May function in nuclear protein import as nuclear transport receptor

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In Situ Assay
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Gene Ontology (GO): 1 molecular function term (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005515	protein binding	IPI	--

RANBP6 for ontologies About GeneDecksing

1 GenomeRNAi human phenotype for RANBP6:

Decreased circadian period len

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for RANBP6

STRING Interaction Network Preview (showing 5 interactants - click image to see 20)

5/26 Interacting proteins for RANBP6 (O60518^{1, 2, 3} ENSP00000259569⁴) via UniProtKB, MINT, STRING, and/or I2D (see all 26)

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
SMAD2	Q15796²^,³	MINT-61617 I2D: score=2
NME2	P22392³, ENSP00000365572⁴	I2D: score=1 STRING: ENSP00000365572
NME1-NME2	P22392³	I2D: score=1
GABARAP	O95166³	I2D: score=2
GABARAPL1	Q9H0R8³	I2D: score=1

About this table

Gene Ontology (GO): 1 biological process term (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0015031	protein transport	IEA	--

RANBP6 for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

RANBP6 for compounds About GeneDecksing

Browse Small Molecules at EMD Millipore

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Browse Tocris compounds for RANBP6
1 Novoseek chemical compound relationship for RANBP6 gene About this table

Compound	-log (P-Val)	Hits	PubMed IDs for Articles with Shared Sentences (# sentences)
gtp	46.4	2	16930555 (1), 10367892 (1)

Search CenterWatch for drugs/clinical trials and news about RANBP6 / RNBP6

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
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About This Section

REFSEQ mRNAs for RANBP6 gene (3 alternative transcripts):

NM_001243202.1 NM_001243203.1 NM_012416.3

Unigene Clusters for RANBP6:

RAN binding protein 6

Hs.167496 [show with all ESTs], Hs.732683 [show with all ESTs]

Unigene Representative Sequences: NM_012416, AF039023

2 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000259569(uc003zjr.3) ENST00000485372(uc011lmf.2 uc003zjs.3)

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		hsa-miR-106a hsa-miR-200a hsa-miR-373* hsa-miR-141 hsa-miR-93 hsa-miR-558 hsa-miR-3121-3p hsa-miR-526b*

		SwitchGear 3'UTR luciferase reporter plasmid: RANBP6 3' UTR sequence

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Additional cDNA sequence:

AF039023.1 AK307840.1

4 DOTS entries:

DT.414867 DT.121154918 DT.121154919 DT.91719146

24/108 AceView cDNA sequences (see all 108):

BQ953326 CR606996 AA488775 BQ722086 NM_012416 AA706460 BU661914 AA489790

AI187237 Z43830 BC012805 BF476384 AF039023 CR601099 AI382997 AI700726

AK001982 AA905532 BX537405 BM720913 BM677000 BM839500 BM800655 CB134274

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

RANBP6 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: AAAAAGAAAA

About this image
See RANBP6 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for RANBP6

SOURCE GeneReport for Unigene clusters: Hs.167496 Hs.732683

SABiosciences Custom PCR Arrays for RANBP6

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In Situ
Assay Products:

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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of eukaryotes.

Orthologs for RANBP6 gene from 7/26 species (see all 26) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
chicken (Gallus gallus)	Aves	--	Uncharacterized protein	78(a)	1 → many	1(149330116-149369814)
lizard (Anolis carolinensis)	Reptilia	-- --	--	77(a) 71(a)	many ↔ many many ↔ many	3(98154415-98195899) AAWZ02039293(6974-7930)
zebrafish (Danio rerio)	Actinopterygii	kpnb3⁶	karyopherin (importin) beta 3	74(a)	1 → many	1(2017193-2056339)
fruit fly (Drosophila melanogaster)	Insecta	Karybeta3⁶	Karyopherin beta 3	48(a)	1 → many	3R(474945-480360)
worm (Caenorhabditis elegans)	Secernentea	imb-3⁶	IMportin Beta family member (imb-3)	34(a)	1 → many	I(310981-314992)
thale cress (Arabidopsis thaliana)	eudicotyledons	emb2734⁶	armadillo/beta-catenin-like repeat-containing prot...	34(a)	1 → many	5(6695224-6701311)
rice (Oryza sativa)	Liliopsida	-- --	HEAT repeat family protein, putative, expressed	34(a) 34(a)	many ↔ many many ↔ many	3(28121731-28130190) 7(23255431-23264301)

ENSEMBL Gene Tree for RANBP6 (if available)
TreeFam Gene Tree for RANBP6 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

Paralogs for RANBP6 gene

IPO5²

1 SIMAP similar gene for RANBP6 using alignment to 1 protein entry: RNBP6_HUMAN:

IPO5

RANBP6 for paralogs About GeneDecksing

1 Pseudogenes.org Pseudogene for RANBP6
PGOHUM00000239331

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 9 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs139893043^1,2		--	6010569(+)	`GGAGGC/TGGAGG`	3	--	int¹		0	--	--	--	--
rs145414644^1,2		--	6010593(+)	`AGATCA/GTGCCA`	3	--	int¹		0	--	--	--	--
rs147689977^1,2		--	6010601(+)	`CCATTA/GCACTC`	3	--	int¹		0	--	--	--	--
rs186985866^1,2		--	6010620(+)	`GCAACA/GAGAGC`	3	--	int¹		0	--	--	--	--
rs7853734^1,2	C,F,A,	--	6010632(+)	`AAACTA/CCATCT`	3	--	int¹		5		NA EA	246
rs142466427^1,2		--	6010681(+)	`GGTATA/GTAGGT`	3	--	int¹		0	--	--	--	--
rs191809440^1,2		--	6010823(+)	`TAAAAA/CTTGTG`	3	--	int¹		0	--	--	--	--
rs184160219^1,2		--	6010891(+)	`TGGAAG/TGGACA`	3	--	int¹		0	--	--	--	--
rs41281759^1,2	C,F,	--	6011134(+)	`TAGATG/ATATTT`	3	--	ut3¹		1		NA	120
rs117996258^1,2	C,F,	--	6011145(+)	`AAGTTT/CTGGAT`	3	--	ut3¹		1		NA	120

HapMap Linkage Disequilibrium report for RANBP6 (6011019 - 6015640 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 2 variations for RANBP6
2 CNVs: 70513 70512

SABiosciences Cancer Mutation PCR Assays

QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing RANBP6

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

RANBP6 for disorders About GeneDecksing

1 disease for RANBP6: About MalaCards

malaria

Export disorders for RANBP6 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for RANBP6 gene, integrated from 9 sources (see all 20):
(articles sorted by number of sources associating them with RANBP6)

Utopia: connect your pdf to the dynamic
world of online information

DNA sequence and analysis of human chromosome 9. (PubMed id 15164053)^{1, 2} Humphray S.J.... Dunham I. (2004)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{1, 2} Gerhard D.S....Malek J. (2004)
Global landscape of HIV-human protein complexes. (PubMed id 22190034)¹ Jager S....Krogan N.J. (2012)
Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)¹ Udeshi N.D....Carr S.A. (2012)
A high-throughput approach for measuring temporal chan ges in the interactome. (PubMed id 22863883)¹ Kristensen A.R....Foster L.J. (2012)
Initial characterization of the human central proteome. (PubMed id 21269460)² Burkard T.R.... Colinge J. (2011)
A proteome-wide, quantitative survey of in vivo ubiqui tylation sites reveals widespread regulatory roles. (PubMed id 21890473)¹ Wagner S.A....Choudhary C. (2011)
Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048)¹ Danielsen J.M....Nielsen M.L. (2011)
System-wide changes to SUMO modifications in response to heat shock. (PubMed id 19471022)¹ Golebiowski F....Hay R.T. (2009)
The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005)² Bechtel S.... Schupp I. (2007)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 26953	HGNC: 9851	AceView: RANBP6	Ensembl:ENSG00000137040	euGenes: HUgn26953
ECgene: RANBP6	H-InvDB: RANBP6

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for RANBP6	Pharmacogenomics, SNPs, Pathways

Intellectual Property for RANBP6 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for RANBP6 gene:
Search GeneIP for patents involving RANBP6

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section


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ThermoFisher Antibody for RANBP6

Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RANBP6

GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

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Category			VWF (GIFTS: 73) von Willebrand factor
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The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

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Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

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RANBP6 Gene

RAN binding protein 6

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RANBP6 Gene

RAN binding protein 6

Aliasesfor RANBP6 gene

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Genomic Viewsfor RANBP6 gene

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