Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RANBP3L Gene

Aliases for RANBP3L Gene

  • RAN Binding Protein 3-Like 2 3

External Ids for RANBP3L Gene

Summaries for RANBP3L Gene

GeneCards Summary for RANBP3L Gene

RANBP3L (RAN Binding Protein 3-Like) is a Protein Coding gene. An important paralog of this gene is RANBP3.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RANBP3L Gene

Genomics for RANBP3L Gene

Genomic Location for RANBP3L Gene

Start:
36,247,848 bp from pter
End:
36,302,114 bp from pter
Size:
54,267 bases
Orientation:
Minus strand

Genomic View for RANBP3L Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RANBP3L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RANBP3L Gene

Regulatory Elements for RANBP3L Gene

Proteins for RANBP3L Gene

  • Protein details for RANBP3L Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86VV4-RNB3L_HUMAN
    Recommended name:
    Ran-binding protein 3-like
    Protein Accession:
    Q86VV4
    Secondary Accessions:
    • B7Z866
    • E9PGP9
    • Q96LK2

    Protein attributes for RANBP3L Gene

    Size:
    465 amino acids
    Molecular mass:
    52211 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for RANBP3L Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RANBP3L Gene

Proteomics data for RANBP3L Gene at MOPED

Post-translational modifications for RANBP3L Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RANBP3L Gene

No data available for DME Specific Peptides for RANBP3L Gene

Domains for RANBP3L Gene

Protein Domains for RANBP3L Gene

InterPro:
Blocks:
ProtoNet:

UniProtKB/Swiss-Prot:

RNB3L_HUMAN
Domain:
  • Contains 1 RanBD1 domain.:
    • Q86VV4
genes like me logo Genes that share domains with RANBP3L: view

No data available for Gene Families for RANBP3L Gene

Function for RANBP3L Gene

Phenotypes for RANBP3L Gene

GenomeRNAi human phenotypes for RANBP3L:
genes like me logo Genes that share phenotypes with RANBP3L: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RANBP3L Gene

Localization for RANBP3L Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RANBP3L Gene COMPARTMENTS Subcellular localization image for RANBP3L gene
Compartment Confidence
nucleus 3
cytosol 2
mitochondrion 1

No data available for Gene Ontology (GO) - Cellular Components for RANBP3L Gene

Pathways for RANBP3L Gene

SuperPathways for RANBP3L Gene

No Data Available

Interacting Proteins for RANBP3L Gene

Gene Ontology (GO) - Biological Process for RANBP3L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0046907 intracellular transport IEA --
genes like me logo Genes that share ontologies with RANBP3L: view

No data available for Pathways by source for RANBP3L Gene

Transcripts for RANBP3L Gene

mRNA/cDNA for RANBP3L Gene

Unigene Clusters for RANBP3L Gene

RAN binding protein 3-like:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RANBP3L Gene

No ASD Table

Relevant External Links for RANBP3L Gene

GeneLoc Exon Structure for
RANBP3L
ECgene alternative splicing isoforms for
RANBP3L

Expression for RANBP3L Gene

mRNA expression in normal human tissues for RANBP3L Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for RANBP3L Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (5.0), Brain - Caudate (basal ganglia) (4.9), Brain - Amygdala (4.9), and Brain - Putamen (basal ganglia) (4.2).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for RANBP3L Gene

SOURCE GeneReport for Unigene cluster for RANBP3L Gene Hs.729817

genes like me logo Genes that share expressions with RANBP3L: view

Orthologs for RANBP3L Gene

This gene was present in the common ancestor of animals.

Orthologs for RANBP3L Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RANBP3L 36
  • 99.52 (n)
  • 98.78 (a)
RANBP3L 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RANBP3L 36
  • 85.02 (n)
  • 74.61 (a)
RANBP3L 37
  • 74 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RANBP3L 36
  • 87.62 (n)
  • 80.61 (a)
RANBP3L 37
  • 76 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ranbp3l 36
  • 78.85 (n)
  • 71.05 (a)
Ranbp3l 16
Ranbp3l 37
  • 64 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia RANBP3L 37
  • 53 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RANBP3L 37
  • 50 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ranbp3l 36
  • 76.8 (n)
  • 70.4 (a)
chicken
(Gallus gallus)
Aves RANBP3L 36
  • 66.26 (n)
  • 58.85 (a)
RANBP3L 37
  • 49 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RANBP3L 37
  • 44 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ranbp3l 36
  • 50.07 (n)
  • 40.53 (a)
fruit fly
(Drosophila melanogaster)
Insecta RanBP3 37
  • 20 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea ran-5 37
  • 18 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 15 (a)
ManyToMany
CSA.2235 37
  • 21 (a)
ManyToMany
Species with no ortholog for RANBP3L:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • zebrafish (Danio rerio)

Evolution for RANBP3L Gene

ENSEMBL:
Gene Tree for RANBP3L (if available)
TreeFam:
Gene Tree for RANBP3L (if available)

Paralogs for RANBP3L Gene

Paralogs for RANBP3L Gene

Selected SIMAP similar genes for RANBP3L Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with RANBP3L: view

Variants for RANBP3L Gene

Sequence variations from dbSNP and Humsavar for RANBP3L Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs716636 -- 36,279,707(-) ATAAG(G/T)GTTCC intron-variant
rs716637 -- 36,279,840(-) GTGTT(A/T)GTCAT intron-variant
rs721819 -- 36,279,762(-) AACTT(G/T)AAAGC intron-variant
rs732328 -- 36,247,875(-) AGTCT(C/T)GCTCT utr-variant-3-prime
rs884692 -- 36,301,267(+) CTTCC(A/G/T)GGAAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RANBP3L Gene

Variant ID Type Subtype PubMed ID
nsv830262 CNV Gain 17160897
nsv881598 CNV Gain 21882294
esv2730076 CNV Deletion 23290073
esv2730077 CNV Deletion 23290073

Relevant External Links for RANBP3L Gene

HapMap Linkage Disequilibrium report
RANBP3L

Disorders for RANBP3L Gene

Relevant External Links for RANBP3L

Genetic Association Database (GAD)
RANBP3L
genes like me logo Genes that share disorders with RANBP3L: view

No data available for UniProtKB/Swiss-Prot for RANBP3L Gene

Publications for RANBP3L Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Impact of four loci on serum tamsulosin hydrochloride concentration. (PMID: 23151678) Takata R. … Nakamura Y. (J. Hum. Genet. 2013) 3
  3. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S. … Cupples L.A. (BMC Med. Genet. 2007) 49
  4. Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project. (PMID: 17903300) Fox C.S. … Atwood L.D. (BMC Med. Genet. 2007) 49
  5. Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry. (PMID: 21998595) N'Diaye A. … Haiman C.A. (PLoS Genet. 2011) 49

Products for RANBP3L Gene

Sources for RANBP3L Gene

Back to Top

Content