Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

RANBP3 Gene

protein-coding   GIFtS: 59
GCID: GC19M005916

RAN binding protein 3

 Explore 3 diseases affiliated with
RANBP3 via our new
 Human Malady Compendium 
Biological research products
for RANBP3
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
RAN Binding Protein 31 2
Ran-Binding Protein 32
RAN-Binding Protein-32
RanBP33

External Ids:    HGNC: 98501   Entrez Gene: 84982   Ensembl: ENSG000000318237   OMIM: 6033275   UniProtKB: Q9H6Z43   

Export aliases for RANBP3 gene to outside databases

Previous GC identifers: GC19M006008 GC19M005856 GC19M005867 GC19M005675


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for RANBP3:
This gene encodes a protein with a RanBD1 domain that is found in both the nucleus and cytoplasm. This protein plays a
role in nuclear export as part of a heteromeric complex. Alternate transcriptional splice variants, encoding different
isoforms, have been characterized. (provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: RANB3_HUMAN, Q9H6Z4
Function: Acts as a cofactor for XPO1/CRM1-mediated nuclear export, perhaps as export complex scaffolding protein.
Bound to XPO1/CRM1, stabilizes the XPO1/CRM1-cargo interaction. In the absence of Ran-bound GTP prevents binding of
XPO1/CRM1 to the nuclear pore complex. Binds to CHC1/RCC1 and increases the guanine nucleotide exchange activity of
CHC1/RCC1. Recruits XPO1/CRM1 to CHC1/RCC1 in a Ran-dependent manner. Negative regulator of TGF-beta signaling through
interaction with the R-SMAD proteins, SMAD2 and SMAD3, and mediating their nuclear export

Gene Wiki entry for RANBP3


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000019.9  NC_018930.1  NT_011255.14  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the RANBP3 gene promoter:
         COUP-TF1   COUP-TF   COUP   HNF-4alpha2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidRANBP3 promoter sequence
   Search SABiosciences Chromatin IP Primers for RANBP3

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RANBP3


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19p13.3   Ensembl cytogenetic band:  19p13.3   HGNC cytogenetic band: 19p13.3

RANBP3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RANBP3 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19M005916:  view genomic region     (about GC identifiers)

Start:
5,916,150 bp from pter      End:
5,978,320 bp from pter
Size:
62,171 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: RANB3_HUMAN, Q9H6Z4 (See protein sequence)
Recommended Name: Ran-binding protein 3  
Size: 567 amino acids; 60210 Da
Subunit: Interacts with CHC1 in a Ran-stimulated manner. Interacts with XPO1. Interacts (via its C-terminal R domain)
with SMAD2 (dephosphorylated form via its MH1 and MH2 domains); the interaction results in the nuclear export of SMAD2
and termination of the TGF-beta signaling. Interacts (via its C-terminal R domain) with SMAD3 (dephosphorylated form
via its MH1 domain); the interaction results in the nuclear export of SMAD3 and termination of the TGF-beta signaling
Subcellular location: Cytoplasm. Nucleus
Sequence caution: Sequence=AAH04349.1; Type=Miscellaneous discrepancy; Note=Aberrant splicing; Sequence=CAB43293.1;
Type=Erroneous initiation; Note=Translation N-terminally shortened;
3 PDB 3D structures from and Proteopedia for RANBP3:
2CRF (3D)        2Y8F (3D)        2Y8G (3D)    
Secondary accessions: B2RAT8 O60405 O75759 O75760 Q9BT47 Q9UG74
Alternative splicing: 3 isoforms:  Q9H6Z4-1   Q9H6Z4-2   Q9H6Z4-3   

Explore the universe of human proteins at neXtProt for RANBP3: NX_Q9H6Z4

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q9H6Z4

  • RANBP3 Protein expression data from MOPED and PaxDb:    About this image 
    RANBP3 Protein Expression
    REFSEQ proteins (3 alternative transcripts): 
    NP_003615.2  NP_015559.2  NP_015561.1  

    ENSEMBL proteins: 
     ENSP00000404837   ENSP00000341483   ENSP00000466879   ENSP00000465085   ENSP00000034275  
     ENSP00000464774   ENSP00000468815   ENSP00000466510   ENSP00000466761   ENSP00000465336  
     ENSP00000468211   ENSP00000466970   ENSP00000464705   ENSP00000467760   ENSP00000464986  
     ENSP00000467560   ENSP00000466638   ENSP00000445071  

    Human Recombinant Protein Products for RANBP3: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Browse OriGene full length recombinant human proteins expressed in human HEK293 cells
    OriGene Protein Over-expression Lysate (see all 2): RANBP3
    OriGene Custom Protein Services for RANBP3 
    GenScript Custom Purified and Recombinant Proteins Services for RANBP3
    Novus Biologicals RANBP3 Proteins
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for RANBP3

    Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IDA--
    GO:0005730NOT nucleolus IDA--
    GO:0005737cytoplasm IEA--

    RANBP3 for ontologies           About GeneDecksing



    RANBP3 Antibody Products: 
    Browse EMD Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Browse R&D Systems for Antibodies
    Cell Signaling Technology (CST) Antibodies for RANBP3 
    OriGene Antibodies: RANBP3
    OriGene Custom Antibody Services for RANBP3 
    GenScript Custom Superior Antibodies Services for RANBP3
    Novus Biologicals RANBP3 Antibodies
    Abcam antibodies for RANBP3 
    Uscn Antibodies for RANBP3
    ThermoFisher Antibody for RANBP3

    Assay Products for RANBP3: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for RANBP3
    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for RANBP3


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    RANBP3 for domains           About GeneDecksing

    2 InterPro domains/families:
     IPR000156 Ran_bind_dom
     IPR011993 PH_like_dom

    Graphical View of Domain Structure for InterPro Entry Q9H6Z4

    ProtoNet protein and cluster: Q9H6Z4

    1 Blocks protein family: IPB000156 RanBP1 domain

    UniProtKB/Swiss-Prot: RANB3_HUMAN, Q9H6Z4
    Similarity: Contains 1 RanBD1 domain


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: RANB3_HUMAN, Q9H6Z4
    Function: Acts as a cofactor for XPO1/CRM1-mediated nuclear export, perhaps as export complex scaffolding protein.
    Bound to XPO1/CRM1, stabilizes the XPO1/CRM1-cargo interaction. In the absence of Ran-bound GTP prevents binding of
    XPO1/CRM1 to the nuclear pore complex. Binds to CHC1/RCC1 and increases the guanine nucleotide exchange activity of
    CHC1/RCC1. Recruits XPO1/CRM1 to CHC1/RCC1 in a Ran-dependent manner. Negative regulator of TGF-beta signaling through
    interaction with the R-SMAD proteins, SMAD2 and SMAD3, and mediating their nuclear export

         Genatlas biochemistry entry for RANBP3:
    RAN binding protein 3,localized in the nucleus,nuclear effector of the RAN pathway,preferentially bound to importin
    alpha 3

         Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding IPI11932251
    GO:0008536Ran GTPase binding TAS9637251
    GO:0070412R-SMAD binding IPI19289081
         
    RANBP3 for ontologies           About GeneDecksing


    Phenotypes:
         2 GenomeRNAi human phenotypes for RANBP3:
     Increased G2M DNA content  Nuclear pre-40S maturation def 

    Animal Models:
       inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for RANBP3 

    miRNA
    Products:
        
    miRTarBase miRNAs that target RANBP3:
    hsa-mir-192 (MIRT004172)

    OriGene 3'-UTR Clone (see all 3): RANBP3
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat RANBP3
    8/35 QIAGEN miScript miRNA Assays for microRNAs that regulate RANBP3 (see all 35):
    hsa-miR-15a hsa-miR-218-1* hsa-miR-424 hsa-miR-330-3p hsa-miR-497* hsa-miR-15b hsa-miR-181b hsa-miR-455-5p
    SwitchGear 3'UTR luciferase reporter plasmidRANBP3 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for RANBP3 (see all 4)
    OriGene shRNA RFP: RANBP3
    OriGene siRNA: RANBP3
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RANBP3
    Sirion Biotech Custom design and validation of potent shRNA sequences against RANBP3 

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for RANBP3
    Sirion Biotech Customized adenovirus for overexpression of RANBP3 
    Sirion Biotech Customized adenovirus for potent knockdown of RANBP3

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for RANBP3 (see all 4)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RANBP3 (see all 3)
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector (see all 3): RANBP3 (NM_007322)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for RANBP3
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RANBP3 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for RANBP3
    Search LifeMap BioReagents cell lines for RANBP3
    Sirion Biotech Customized stable knockdown cell line services for RANBP3 
    Sirion Biotech Customized inducible knockdown cell line services for RANBP3
    Sirion Biotech Customized stable overexpressing cell line services for RANBP3
    Sirion Biotech Customized inducible overexpressing cell line services for RANBP3

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RANBP3


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1MAP Kinase Signaling
    MAP Kinase Signaling1.00
    2Cytoskeletal Signaling
    Cytoskeletal Signaling1.00
    3Canonical Wnt signaling pathway
    Canonical Wnt signaling pathway1.00
    4PI3K / Akt Signaling
    PI3K / Akt Signaling1.00

    Pathway sources
    See GeneCards unified pathways
    Show all pathways


    3 Cell Signaling Technology (CST) Pathways for RANBP3
        MAP Kinase Signaling
    Cytoskeletal Signaling
    PI3K / Akt Signaling

    1 BioSystems Pathway for RANBP3 
        Canonical Wnt signaling pathway



    RANBP3 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for RANBP3

    STRING Interaction Network Preview (showing 5 interactants - click image to see 16)

    5/17 Interacting proteins for RANBP3 (Q9H6Z41, 2, 3 ENSP000003414834) via UniProtKB, MINT, STRING, and/or I2D (see all 17)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    RCC1P187541, 3, ENSP000003629374EBI-992681,EBI-992720 I2D: score=4 STRING: ENSP00000362937
    PPM1AP358132, ENSP000003272554MINT-8302849 MINT-8302864 MINT-8302886 MINT-8302912 STRING: ENSP00000327255
    SMAD2Q157962, ENSP000002621604MINT-8303634 MINT-8302942 MINT-8302955 STRING: ENSP00000262160
    RANP628263, ENSP000003961274I2D: score=4 STRING: ENSP00000396127
    BSGP356133, ENSP000003337694I2D: score=2 STRING: ENSP00000333769
    About this table

    Gene Ontology (GO): 2 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0015031protein transport IEA--
    GO:0046907intracellular transport IEA--

    RANBP3 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for RANBP3

    3 HMDB Compounds for RANBP3    About this table
    CompoundSynonyms CAS #PubMed Ids
    Guanosine diphosphate5'-GDP (see all 10)146-91-8--
    Guanosine monophosphate5'-GMP (see all 14)85-32-5--
    Guanosine triphosphate5'-GTP (see all 10)86-01-1--
    Search CenterWatch for drugs/clinical trials and news about RANBP3 / RANB3 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for RANBP3 gene (4 alternative transcripts): 
    NM_003624.2  NM_007320.2  NM_007322.2  NM_007321.1  

    Unigene Cluster for RANBP3:

    RAN binding protein 3
    Hs.531752  [show with all ESTs]
    Unigene Representative Sequence: NM_007322
    18/31 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 31):
    ENST00000439268(uc002mdx.3) ENST00000340578(uc002mdw.3) ENST00000592771
    ENST00000586344 ENST00000591092 ENST00000034275(uc002mdv.3 uc002mdy.3 uc002mdz.3 uc010duq.3 uc010xix.2)
    ENST00000587479 ENST00000592197 ENST00000587411 ENST00000592621 ENST00000587799
    ENST00000590623 ENST00000591736 ENST00000593025 ENST00000590953 ENST00000588879
    ENST00000587159 ENST00000586117

    miRNA
    Products:
         
    OriGene 3'-UTR Clone (see all 3): RANBP3
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat RANBP3
    8/35 QIAGEN miScript miRNA Assays for microRNAs that regulate RANBP3 (see all 35):
    hsa-miR-15a hsa-miR-218-1* hsa-miR-424 hsa-miR-330-3p hsa-miR-497* hsa-miR-15b hsa-miR-181b hsa-miR-455-5p
    SwitchGear 3'UTR luciferase reporter plasmidRANBP3 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for RANBP3 (see all 4)
    OriGene shRNA RFP: RANBP3
    OriGene siRNA: RANBP3
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RANBP3
    Sirion Biotech Custom design and validation of potent shRNA sequences against RANBP3 
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for RANBP3 (see all 4)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RANBP3 (see all 3)
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector (see all 3): RANBP3 (NM_007322)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for RANBP3
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RANBP3 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for RANBP3
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat RANBP3
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RANBP3
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RANBP3

    Additional cDNA sequence: 

    AK025300.1 AK222813.1 AK222990.1 AK299260.1 AK299856.1 AK301942.1 AK308205.1 AK314343.1 
    AL050149.1 BC004349.1 DQ234346.1 Y08697.1 Y08698.1 

    24/29 DOTS entries (see all 29):

    DT.97760083  DT.312821  DT.115050  DT.100819240  DT.100819250  DT.121422834  DT.100819247  DT.100819243 
    DT.100819236  DT.121422661  DT.92417407  DT.100819239  DT.95179246  DT.100762281  DT.100819238  DT.102831121 
    DT.121422868  DT.121422618  DT.91749768  DT.91749772  DT.91793754  DT.99989646  DT.100819249  DT.100834809 

    24/387 AceView cDNA sequences (see all 387):

    CR616491 CA413483 BM739134 CA843721 NM_007322 BE410604 BQ017166 CR593954 
    BM728196 BM764633 AA307707 AI183345 BF438355 BU631323 BG152533 AL050149 
    AA766014 CA407006 CR606736 BM752717 BX394304 AA410638 AW445048 CF131361 

    GeneLoc Exon Structure

    5/11 Alternative Splicing Database (ASD) splice patterns (SP) for RANBP3 (see all 11)    About this scheme

    ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b · 8c ^ 9a · 9b ^ 10a · 10b ^ 11a · 11b ^ 12a · 12b ^ 13 ^ 14a · 14b ^ 15 ^ 16a · 16b ^
    SP1:                    -                             -     -     -           -                       -                                                     -   
    SP2:                    -                             -     -     -           -                 -     -                                                     -   
    SP3:                                                                          -                 -     -                                                     -   
    SP4:                    -           -                 -     -     -           -                       -                                                         
    SP5:                                                                                                  -                                                         

    ExUns: 17a · 17b ^ 18 ^ 19a · 19b · 19c
    SP1:        -                           
    SP2:        -                           
    SP3:        -                           
    SP4:                                    
    SP5:                                    


    ECgene alternative splicing isoforms for RANBP3

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    RANBP3 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: TGTTTTGGAA
    RANBP3 Expression
    About this image
    See RANBP3 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for RANBP3

    SOURCE GeneReport for Unigene cluster: Hs.531752

    UniProtKB/Swiss-Prot: RANB3_HUMAN, Q9H6Z4
    Tissue specificity: Widely expressed with high levels in testis and heart

        SABiosciences Custom PCR Arrays for RANBP3
    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for RANBP3
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat RANBP3
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RANBP3
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RANBP3
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RANBP3

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for RANBP3 gene from 7/26 species (see all 26)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves RANBP31 RAN binding protein 3 74.8(n)
    81.64(a)
      420058  XM_418179.3  XP_418179.1 
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.120302 Xenopus laevis transcribed sequence with moderate similarity more 77.91(n)    BU910298.1 
    zebrafish
    (Danio rerio)
    Actinopterygii zgc663852 hypothetical protein MGC66385 80.21(n)   393663  BC059200.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta RanBP31 Ran binding protein 3 46.39(n)
    38.06(a)
      42804  NM_142921.3  NP_651178.1 
    worm
    (Caenorhabditis elegans)
    Secernentea ran-56
    associated with RAN (nuclear import/export) functi...
    20(a)
    1 → many
    II(6048079-6049667)
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons AT1G523806
    AT3G159706
    NUP50 protein
    16(a)
    15(a)
    many ↔ many
    many ↔ many
    1(19508983-19511539)
    3(5408797-5411143)
    rice
    (Oryza sativa)
    Liliopsida --
    ranBP1 domain containing protein, expressed
    14(a)
    1 → many
    5(16445417-16449106)


    ENSEMBL Gene Tree for RANBP3 (if available)
    TreeFam Gene Tree for RANBP3 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for RANBP3 gene
    RANBP3L2  
    8 SIMAP similar genes for RANBP3 using alignment to 18 protein entries:     RANB3_HUMAN (see all proteins):
    ranbp3    FAM175A    RPL27A    COPS7B    FP1523    TBC1D22A
    LOC284385    RANBP3L

    RANBP3 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/941 NCBI SNPs in RANBP3 are shown (see all 941    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 19 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs126098211,2
    H--5916887(+) GGAACC/TTGGGG 3 -- ut310--------
    rs1168761561,2
    C,F--5917080(+) GGAAAT/CGAAGA 3 -- ut312Minor allele frequency- C:0.01NA EU 529
    rs1835467321,2
    C--5917102(+) AGCACA/G/TTCCAA 6 -- ut311EU 459
    rs1890536811,2
    --5917473(+) TTGAAA/CAGGAC 3 -- ut310--------
    rs48070581,2
    C--5917616(+) CTCCCA/GGCCGC 3 -- ut31 ese30--------
    rs358951001,2
    C--5917644(-) GGGACG/AGGCAG 6 /R /G mis11Minor allele frequency- A:0.01NA 72
    rs104073691,2
    C,F--5917734(+) CCAGGA/TGATCA 3 -- int11Minor allele frequency- T:0.09WA 118
    rs37456321,2
    C,F,H--5917779(-) CCTGGG/CGGGGA 3 -- int15Minor allele frequency- C:0.01EA NS 1160
    rs1917127631,2
    C--5917854(+) CTGTCA/GTCCTC 6 D syn10--------
    rs1836010241,2
    --5917862(+) CTCCTC/TGTTGG 6 K E mis10--------

    HapMap Linkage Disequilibrium report for RANBP3 (5916150 - 5978320 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for RANBP3: --

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing RANBP3
    DNA2.0 Custom Variant and Variant Library Synthesis for RANBP3

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    RANBP3 for disorders           About GeneDecksing

    OMIM gene information: 603327    OMIM disorders: --

    3 diseases for RANBP3:    About MalaCards
    human t-cell leukemia virus type 1    t-cell leukemia    leukemia


    Export disorders for RANBP3 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for RANBP3 gene, integrated from 9 sources (see all 37):
    (articles sorted by number of sources associating them with RANBP3)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Human RanBP3, a group of nuclear RanGTP binding proteins. (PubMed id 9637251)1, 2, 3, 9 Mueller L.... Ponstingl H. (1998)
    2. Ran-binding protein 3 links Crm1 to the Ran guanine nucleotide exchange factor. (PubMed id 11932251)1, 2, 9 Nemergut M.E.... Macara I.G. (2002)
    3. Nuclear export of Smad2 and Smad3 by RanBP3 facilitates termination of TGF-beta signaling. (PubMed id 19289081)1, 2 Dai F....Feng X.H. (2009)
    4. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)1, 2 Olsen J.V....Mann M. (2006)
    5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    6. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    7. The DNA sequence and biology of human chromosome 19. (PubMed id 15057824)1, 2 Grimwood J.... Lucas S.M. (2004)
    8. Ran-binding protein 3 is a cofactor for Crm1-mediated nuclear protein export. (PubMed id 11425870)1, 2 Lindsay M.E.... Macara I.G. (2001)
    9. RanBP3 influences interactions between CRM1 and its nuclear protein export substrates. (PubMed id 11571268)1, 2 Englmeier L....Kutay U. (2001)
    10. A multifunctional domain in human CRM1 (exportin 1) mediates RanBP3 binding and multimerization of human T-cell leukemia virus type 1 Rex protein. (PubMed id 14612415)1, 9 Hakata Y.... Shida H. (2003)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 8498 HGNC: 9850 AceView: RANBP3 Ensembl:ENSG00000031823 euGenes: HUgn8498
    ECgene: RANBP3 H-InvDB: RANBP3

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for RANBP3 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for RANBP3 gene:
    Search GeneIP for patents involving RANBP3

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
    About This Section

     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Browse Antibodies   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Browse Recombinant/Natural Proteins  
     OriGene Antibodies for RANBP3   OriGene shRNA RFP for RANBP3  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for RANBP3   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for RANBP3  
     OriGene Protein Over-expression Lysate for RANBP3   Browse OriGene Fluorogenic Cell Assay Kits  
     OriGene siRNA for RANBP3   OriGene 3'-UTR Clone for RANBP3  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RANBP3   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for RANBP3  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     Browse OriGene full length recombinant human proteins expressed in human HEK293 cells   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for RANBP3   OriGene Custom Protein Services for RANBP3  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat RANBP3
     QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing RANBP3
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RANBP3
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RANBP3
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RANBP3
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RANBP3
     GenScript Custom Purified and Recombinant Proteins Services for RANBP3 GenScript cDNA clones with any tag delivered in your preferred vector for RANBP3
     GenScript Custom Assay Services for RANBP3 GenScript Custom Superior Antibodies Services for RANBP3
     GenScript Custom overexpressing Cell Line Services for RANBP3 CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Antibodies & Assays for RANBP3 

     Regulatory tfbs in RANBP3 promoter
     Search Chromatin IP Primers for RANBP3
     RT2 qPCR Primer Assay in human, mouse, rat RANBP3
     GNC Network for RANBP3
     SABiosciences Custom PCR Arrays for RANBP3
     Search Tocris compounds for RANBP3
     Browse Sino Biological Proteins and Antibodies
     Browse Sino Biological cDNA Clones
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     RANBP3 antibodies
     RANBP3 proteins
     Antibodies for RANBP3
     See all of Abcam's Antibodies, Kits and Proteins for RANBP3
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Browse ProSpec Recombinant Proteins




     RANBP3 Proteins, Antibodies, CLIAs, and ELISAs
     Search LifeMap BioReagents cell lines for RANBP3
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RANBP3
     SwitchGear 3'UTR luciferase reporter plasmids for RANBP3
     SwitchGear Promoter luciferase reporter plasmids for RANBP3
     ThermoFisher Antibody for RANBP3
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RANBP3
     inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for RANBP3
    Sirion Biotech Customized:
     stable knockdown cell line services for RANBP3
     inducible knockdown cell line services for RANBP3
     design and validation of potent shRNA sequences against RANBP3
     adenovirus for potent knockdown of RANBP3
     adenovirus for overexpression of RANBP3
     stable overexpressing cell line services for RANBP3
     inducible overexpressing cell line services for RANBP3
           
    GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013 , 13 May 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      RANBP3 gene at Home site.
    hostname: 356980-web2.xennexinc.com index build: 106 solr: 1.4