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Aliases for RAMP2-AS1 Gene

Subcategory (RNA class) for RAMP2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for RAMP2-AS1 Gene

  • RAMP2 Antisense RNA 1 2 3 5
  • CTD-3193K9.7 3

External Ids for RAMP2-AS1 Gene

Previous GeneCards Identifiers for RAMP2-AS1 Gene

  • GC17M040910

Summaries for RAMP2-AS1 Gene

GeneCards Summary for RAMP2-AS1 Gene

RAMP2-AS1 (RAMP2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for RAMP2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAMP2-AS1 Gene

Genomics for RAMP2-AS1 Gene

GeneHancer (GH) Regulatory Elements for RAMP2-AS1 Gene

Promoters and enhancers for RAMP2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I042761 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE 550.8 +0.1 79 0.5 MXI1 SAP130 ZFP64 ARID4B SIN3A ZNF48 ZNF335 ZBTB48 PATZ1 ZBTB20 GC17P043369 GC17P043370 GC17P043376 GC17P043378 GC17P043404 GC17P043405 GC17P043406 GC17P043518 GC17P043519 GC17P043528
GH17I042762 Enhancer 1.1 Ensembl ENCODE 550.8 -1.5 -1537 2.7 HDGF ARID4B SIN3A ZNF2 ZNF48 SLC30A9 GLIS2 GATA2 ARID2 ZNF143 RAMP2-AS1 RAMP2 GC17P043457 GC17P043458 PIR41707
GH17I042763 Enhancer 0.7 ENCODE 550.8 +0.6 638 0.4 SMARCA5 PKNOX1 ZFP64 ARID4B SIN3A REST KLF5 ZNF48 TGIF2 ZNF217 GC17P043369 GC17P043370 GC17P043376 GC17P043378 GC17P043404 GC17P043405 GC17P043406 GC17P043518 GC17P043519 GC17P043528
GH17I042760 Enhancer 0.6 ENCODE 550.8 +1.0 1039 0.2 SMARCA5 PKNOX1 NR2F1 BACH1 DPF2 KLF5 ZNF217 MYNN IKZF1 ZNF207 GC17P043369 GC17P043370 GC17P043376 GC17P043378 GC17P043404 GC17P043405 GC17P043406 GC17P043426 GC17P043518 GC17P043519
GH17I042772 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 14.4 -13.2 -13157 4 MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 VPS25 HMGN1P29 DHX8 ENSG00000267758 LINC00910 HMGN2P15 NBR2 NKIRAS2 CNTNAP1 MEOX1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RAMP2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RAMP2-AS1 Gene

Genomic Locations for RAMP2-AS1 Gene
chr17:42,753,914-42,761,257
(GRCh38/hg38)
Size:
7,344 bases
Orientation:
Minus strand
chr17:40,905,932-40,913,275
(GRCh37/hg19)

Genomic View for RAMP2-AS1 Gene

Genes around RAMP2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAMP2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAMP2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAMP2-AS1 Gene

Proteins for RAMP2-AS1 Gene

Post-translational modifications for RAMP2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RAMP2-AS1 Gene

Domains & Families for RAMP2-AS1 Gene

Gene Families for RAMP2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RAMP2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RAMP2-AS1 Gene

Function for RAMP2-AS1 Gene

Phenotypes From GWAS Catalog for RAMP2-AS1 Gene

Animal Model Products

miRNA for RAMP2-AS1 Gene

miRTarBase miRNAs that target RAMP2-AS1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RAMP2-AS1 Gene

Localization for RAMP2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RAMP2-AS1 Gene

Pathways & Interactions for RAMP2-AS1 Gene

SuperPathways for RAMP2-AS1 Gene

No Data Available

Interacting Proteins for RAMP2-AS1 Gene

Gene Ontology (GO) - Biological Process for RAMP2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RAMP2-AS1 Gene

Drugs & Compounds for RAMP2-AS1 Gene

No Compound Related Data Available

Transcripts for RAMP2-AS1 Gene

mRNA/cDNA for RAMP2-AS1 Gene

(8) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RAMP2-AS1 Gene

RAMP2 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RAMP2-AS1 Gene

No ASD Table

Relevant External Links for RAMP2-AS1 Gene

GeneLoc Exon Structure for
RAMP2-AS1
ECgene alternative splicing isoforms for
RAMP2-AS1

Expression for RAMP2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RAMP2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for RAMP2-AS1 Gene

This gene is overexpressed in Adipose - Subcutaneous (x5.4) and Adipose - Visceral (Omentum) (x4.8).

SOURCE GeneReport for Unigene cluster for RAMP2-AS1 Gene:

Hs.655265
genes like me logo Genes that share expression patterns with RAMP2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RAMP2-AS1 Gene

Orthologs for RAMP2-AS1 Gene

Evolution for RAMP2-AS1 Gene

ENSEMBL:
Gene Tree for RAMP2-AS1 (if available)
TreeFam:
Gene Tree for RAMP2-AS1 (if available)

No data available for Orthologs for RAMP2-AS1 Gene

Paralogs for RAMP2-AS1 Gene

No data available for Paralogs for RAMP2-AS1 Gene

Variants for RAMP2-AS1 Gene

Sequence variations from dbSNP and Humsavar for RAMP2-AS1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000250435 -- 42,762,272(-) C/T upstream_transcript_variant
rs1000291767 -- 42,755,723(-) T/C intron_variant, non_coding_transcript_variant
rs1000671761 -- 42,754,327(-) C/T intron_variant, non_coding_transcript_variant
rs1001171653 -- 42,756,214(-) C/T intron_variant, non_coding_transcript_variant
rs1001296446 -- 42,757,333(-) G/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for RAMP2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2715949 CNV deletion 23290073
esv33998 OTHER inversion 15654335
esv3640613 CNV loss 21293372
nsv1146669 OTHER inversion 26484159
nsv833450 CNV loss 17160897
nsv960109 CNV duplication 23825009

Additional Variant Information for RAMP2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RAMP2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RAMP2-AS1 Gene

Disorders for RAMP2-AS1 Gene

Additional Disease Information for RAMP2-AS1

No disorders were found for RAMP2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAMP2-AS1 Gene

Publications for RAMP2-AS1 Gene

  1. The Potential Roles of Long Noncoding RNAs (lncRNA) in Glioblastoma Development. (PMID: 27784795) Liu S … Zhao Z (Molecular cancer therapeutics 2016) 2 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for RAMP2-AS1 Gene

Sources for RAMP2-AS1 Gene

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