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Aliases for RAMP2-AS1 Gene

Subcategory (RNA class) for RAMP2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for RAMP2-AS1 Gene

  • RAMP2 Antisense RNA 1 2 3 5
  • CTD-3193K9.7 3

External Ids for RAMP2-AS1 Gene

Previous GeneCards Identifiers for RAMP2-AS1 Gene

  • GC17M040910

Summaries for RAMP2-AS1 Gene

GeneCards Summary for RAMP2-AS1 Gene

RAMP2-AS1 (RAMP2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAMP2-AS1 Gene

Genomics for RAMP2-AS1 Gene

Regulatory Elements for RAMP2-AS1 Gene

Enhancers for RAMP2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F042772 0.4 ENCODE 14.4 -13.2 -13158 4.0 HDGF PKNOX1 ARNT CREB3L1 MLX WRNIP1 ZFP64 ARID4B SIN3A DMAP1 HMGN2P15 LINC00910 AOC4P CNTNAP1 MEOX1 DHX8 HMGN1P29 RAMP2-AS1 NAGLU CCR10
GH17F042843 0.5 ENCODE 14.2 -82.3 -82282 0.2 ELF3 CTCF SAP130 ARID4B ZNF384 ZSCAN9 RAD21 TEAD3 SLC30A9 POLR2A RAMP2-AS1 HMGN2P15 RAMP2 AOC2 BECN1
GH17F042997 0.7 Ensembl ENCODE 14.1 -238.7 -238692 5.2 CREB3L1 MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC DHX8 NBR2 ENSG00000267758 LINC00910 HMGN1P29 HMGN2P15 NAGLU ENSG00000267604 RPL27 FAM134C
GH17F042576 0.5 ENCODE 14.1 +183.1 183073 4.2 HDGF PKNOX1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 TUBG2 MLX CNTNAP1 HMGN1P29 NBR2 RAMP2-AS1 HMGN2P15 FAM134C TUBG1 ENSG00000267758
GH17F042206 0.2 Ensembl 14.1 +554.9 554857 0.4 HDGF ATF1 ARNT ARID4B YBX1 ZNF2 YY1 GLIS2 ZNF143 REST RAMP2-AS1 HMGN2P15 HCRT KCNH4 ENSG00000267758 ENSG00000236194 RAMP2 RAB5C STAT5B ATP6V0A1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RAMP2-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for RAMP2-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001807244 -43 601 ELF3 MAZ RNF2 SAP130 ZFP64 ARID4B REST ZNF48 TGIF2 ZBTB48

Genomic Location for RAMP2-AS1 Gene

Chromosome:
17
Start:
42,753,914 bp from pter
End:
42,761,257 bp from pter
Size:
7,344 bases
Orientation:
Minus strand

Genomic View for RAMP2-AS1 Gene

Genes around RAMP2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAMP2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAMP2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAMP2-AS1 Gene

Proteins for RAMP2-AS1 Gene

Post-translational modifications for RAMP2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RAMP2-AS1 Gene

Domains & Families for RAMP2-AS1 Gene

Gene Families for RAMP2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RAMP2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RAMP2-AS1 Gene

Function for RAMP2-AS1 Gene

Animal Model Products

miRNA for RAMP2-AS1 Gene

miRTarBase miRNAs that target RAMP2-AS1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RAMP2-AS1 Gene

Localization for RAMP2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RAMP2-AS1 Gene

Pathways & Interactions for RAMP2-AS1 Gene

SuperPathways for RAMP2-AS1 Gene

No Data Available

Interacting Proteins for RAMP2-AS1 Gene

Gene Ontology (GO) - Biological Process for RAMP2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RAMP2-AS1 Gene

Transcripts for RAMP2-AS1 Gene

mRNA/cDNA for RAMP2-AS1 Gene

(8) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RAMP2-AS1 Gene

RAMP2 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RAMP2-AS1 Gene

No ASD Table

Relevant External Links for RAMP2-AS1 Gene

GeneLoc Exon Structure for
RAMP2-AS1
ECgene alternative splicing isoforms for
RAMP2-AS1

Expression for RAMP2-AS1 Gene

mRNA expression in normal human tissues for RAMP2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for RAMP2-AS1 Gene

This gene is overexpressed in Adipose - Subcutaneous (x5.4) and Adipose - Visceral (Omentum) (x4.8).

SOURCE GeneReport for Unigene cluster for RAMP2-AS1 Gene:

Hs.655265
genes like me logo Genes that share expression patterns with RAMP2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RAMP2-AS1 Gene

Orthologs for RAMP2-AS1 Gene

Evolution for RAMP2-AS1 Gene

ENSEMBL:
Gene Tree for RAMP2-AS1 (if available)
TreeFam:
Gene Tree for RAMP2-AS1 (if available)

No data available for Orthologs for RAMP2-AS1 Gene

Paralogs for RAMP2-AS1 Gene

No data available for Paralogs for RAMP2-AS1 Gene

Variants for RAMP2-AS1 Gene

Sequence variations from dbSNP and Humsavar for RAMP2-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs10671974 -- 42,759,417(+) TTTTT(-/T)GTAGA intron-variant, upstream-variant-2KB
rs1078522 -- 42,760,794(+) TTAGA(A/T)GCAGC intron-variant, upstream-variant-2KB
rs1078523 -- 42,760,742(+) GCTGC(A/G)TGGCT intron-variant, upstream-variant-2KB
rs111530770 -- 42,761,734(+) CCAAG(A/G)TAGCC intron-variant, upstream-variant-2KB
rs112255908 -- 42,762,177(+) ACATG(C/G)AAGTC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RAMP2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2715949 CNV deletion 23290073
esv33998 OTHER inversion 15654335
esv3640613 CNV loss 21293372
nsv1146669 OTHER inversion 26484159
nsv833450 CNV loss 17160897
nsv960109 CNV duplication 23825009

Relevant External Links for RAMP2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RAMP2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RAMP2-AS1 Gene

Disorders for RAMP2-AS1 Gene

Relevant External Links for RAMP2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RAMP2-AS1

No disorders were found for RAMP2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAMP2-AS1 Gene

Publications for RAMP2-AS1 Gene

  1. The Potential Roles of Long Noncoding RNAs (lncRNA) in Glioblastoma Development. (PMID: 27784795) Liu S. … Zhao Z. (Mol. Cancer Ther. 2016) 2 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for RAMP2-AS1 Gene

Sources for RAMP2-AS1 Gene

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