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Aliases for RAMP2-AS1 Gene

Subcategory (RNA class) for RAMP2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for RAMP2-AS1 Gene

  • RAMP2 Antisense RNA 1 2 3 5
  • CTD-3193K9.7 3

External Ids for RAMP2-AS1 Gene

Previous GeneCards Identifiers for RAMP2-AS1 Gene

  • GC17M040910

Summaries for RAMP2-AS1 Gene

GeneCards Summary for RAMP2-AS1 Gene

RAMP2-AS1 (RAMP2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAMP2-AS1 Gene

Genomics for RAMP2-AS1 Gene

Regulatory Elements for RAMP2-AS1 Gene

Enhancers for RAMP2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G043322 1.7 Ensembl ENCODE dbSUPER 12.1 -561.9 -561906 1.6 MLX ZFP64 YBX1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 ZNF263 ENSG00000267340 ENSG00000267002 ASB16-AS1 HMGN1P29 DHX8 NBR2 ENSG00000267765 HSD17B1 CCR10 LINC00910
GH17G042668 1.6 Ensembl ENCODE dbSUPER 11.3 +93.8 93786 2.1 PKNOX1 ARNT MLX CREB3L1 SIN3A DMAP1 YY1 FOS JUNB REST RETREG3 CNTNAP1 VPS25 TUBG2 DHX8 HMGN1P29 TUBG1 PSMC3IP HMGN2P15 RAMP2
GH17G042672 1.5 ENCODE dbSUPER 11.4 +82.6 82560 11.4 MLX CREB3L1 ZFP64 DMAP1 YBX1 FEZF1 YY1 SLC30A9 ZNF143 ZNF263 CNTNAP1 TUBG2 ENSG00000267002 ENSG00000259623 HMGN2P15 MLX ENSG00000267765 ENSG00000267340 HSD17B1P1 MEOX1
GH17G043552 1.3 Ensembl ENCODE 12.1 -793.2 -793246 4.9 HDGF PKNOX1 FOXA2 ARID4B SIN3A FEZF1 FOS SP3 SP5 ZNF592 ENSG00000267002 ENSG00000267340 ETV4 ASB16-AS1 LOC108783654 MEOX1 RPL29P31 HMGN2P15 RPL27 RAMP2-AS1
GH17G042669 1.3 Ensembl ENCODE dbSUPER 11.3 +90.2 90232 3.4 HDAC1 NFXL1 GLIS2 EGR1 SCRT2 EGR2 ZNF263 MIER1 CEBPB REST PSMC3IP RETREG3 TUBG1 HMGN2P15 RAMP2 RAMP2-AS1 VPS25 TUBG2 NAGLU NBR2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RAMP2-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for RAMP2-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000094457 57 401 ELF3 MXI1 SAP130 FUS ZFP64 ARID4B ZNF48 ZBTB48 PATZ1 FOS

Genomic Location for RAMP2-AS1 Gene

Chromosome:
17
Start:
42,753,914 bp from pter
End:
42,761,257 bp from pter
Size:
7,344 bases
Orientation:
Minus strand

Genomic View for RAMP2-AS1 Gene

Genes around RAMP2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAMP2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAMP2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAMP2-AS1 Gene

Proteins for RAMP2-AS1 Gene

Post-translational modifications for RAMP2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RAMP2-AS1 Gene

Domains & Families for RAMP2-AS1 Gene

Gene Families for RAMP2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RAMP2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RAMP2-AS1 Gene

Function for RAMP2-AS1 Gene

miRNA for RAMP2-AS1 Gene

miRTarBase miRNAs that target RAMP2-AS1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RAMP2-AS1 Gene

Localization for RAMP2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RAMP2-AS1 Gene

Pathways & Interactions for RAMP2-AS1 Gene

SuperPathways for RAMP2-AS1 Gene

No Data Available

Interacting Proteins for RAMP2-AS1 Gene

Gene Ontology (GO) - Biological Process for RAMP2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RAMP2-AS1 Gene

Transcripts for RAMP2-AS1 Gene

mRNA/cDNA for RAMP2-AS1 Gene

(8) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RAMP2-AS1 Gene

RAMP2 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RAMP2-AS1 Gene

No ASD Table

Relevant External Links for RAMP2-AS1 Gene

GeneLoc Exon Structure for
RAMP2-AS1
ECgene alternative splicing isoforms for
RAMP2-AS1

Expression for RAMP2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RAMP2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for RAMP2-AS1 Gene

This gene is overexpressed in Adipose - Subcutaneous (x5.4) and Adipose - Visceral (Omentum) (x4.8).

SOURCE GeneReport for Unigene cluster for RAMP2-AS1 Gene:

Hs.655265
genes like me logo Genes that share expression patterns with RAMP2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RAMP2-AS1 Gene

Orthologs for RAMP2-AS1 Gene

Evolution for RAMP2-AS1 Gene

ENSEMBL:
Gene Tree for RAMP2-AS1 (if available)
TreeFam:
Gene Tree for RAMP2-AS1 (if available)

No data available for Orthologs for RAMP2-AS1 Gene

Paralogs for RAMP2-AS1 Gene

No data available for Paralogs for RAMP2-AS1 Gene

Variants for RAMP2-AS1 Gene

Sequence variations from dbSNP and Humsavar for RAMP2-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000250435 -- 42,762,272(+) ACAGG(C/T)AGTTC intron-variant, upstream-variant-2KB
rs1000291767 -- 42,755,723(+) TTTTG(C/T)ATTTT intron-variant, nc-transcript-variant
rs1000671761 -- 42,754,327(+) CAATA(C/T)AGGGT intron-variant, nc-transcript-variant
rs1001171653 -- 42,756,214(+) GGATG(C/T)TCCAC intron-variant, nc-transcript-variant
rs1001296446 -- 42,757,333(+) GACAT(C/G)TTACT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RAMP2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2715949 CNV deletion 23290073
esv33998 OTHER inversion 15654335
esv3640613 CNV loss 21293372
nsv1146669 OTHER inversion 26484159
nsv833450 CNV loss 17160897
nsv960109 CNV duplication 23825009

Relevant External Links for RAMP2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RAMP2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RAMP2-AS1 Gene

Disorders for RAMP2-AS1 Gene

Relevant External Links for RAMP2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RAMP2-AS1

No disorders were found for RAMP2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAMP2-AS1 Gene

Publications for RAMP2-AS1 Gene

  1. The Potential Roles of Long Noncoding RNAs (lncRNA) in Glioblastoma Development. (PMID: 27784795) Liu S. … Zhao Z. (Mol. Cancer Ther. 2016) 2 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for RAMP2-AS1 Gene

Sources for RAMP2-AS1 Gene

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