Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RAMP2-AS1 Gene

Subcategory (RNA class) for RAMP2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for RAMP2-AS1 Gene

  • RAMP2 Antisense RNA 1 2 3 5
  • CTD-3193K9.7 3

External Ids for RAMP2-AS1 Gene

Previous GeneCards Identifiers for RAMP2-AS1 Gene

  • GC17M040910

Summaries for RAMP2-AS1 Gene

GeneCards Summary for RAMP2-AS1 Gene

RAMP2-AS1 (RAMP2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for RAMP2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAMP2-AS1 Gene

Genomics for RAMP2-AS1 Gene

Regulatory Elements for RAMP2-AS1 Gene

Enhancers for RAMP2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H043455 1.5 Ensembl ENCODE dbSUPER 14 -696.1 -696137 4.4 PKNOX1 FOXA2 ATF1 MLX ARID4B DMAP1 YY1 SLC30A9 ZNF207 ATF7 DHX8 RAMP2-AS1 HMGN2P15 ETV4 MIR2117HG RNU6-470P ARL4D RNU6-1137P PLEKHH3 LINC00910
GH17H043322 1.7 Ensembl ENCODE dbSUPER 12.3 -561.9 -561906 1.6 MLX ZFP64 YBX1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 NFYC ENSG00000267340 UBTF ASB16-AS1 ENSG00000267002 DHX8 HMGN1P29 TMUB2 NBR2 PLEKHH3 LINC00910
GH17H042772 1.2 ENCODE 14.4 -13.2 -13158 4 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 HMGN2P15 DHX8 HMGN1P29 ENSG00000267758 CAVIN1 LINC00910 NKIRAS2 CNTNAP1 MEOX1 RAMP2-AS1
GH17H042997 1.2 ENCODE 14.1 -238.7 -238692 5.2 MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 ZC3H11A NFYC MEF2D DHX8 NBR2 LINC00910 HMGN1P29 ENSG00000267758 ENSG00000267604 HMGN2P15 CAVIN1 PSME3 RPL27
GH17H042672 1.4 ENCODE dbSUPER 11.4 +82.6 82560 11.4 MLX ZFP64 DMAP1 YBX1 YY1 SLC30A9 ZNF143 SP3 NFYC SSRP1 CNTNAP1 TUBG2 ENSG00000267340 ENSG00000267002 HSD17B1 HSD17B1P1 HMGN2P15 ENSG00000259623 MLX KAT2A
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RAMP2-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for RAMP2-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000094457 57 401 ELF3 MXI1 SAP130 ZFP64 ARID4B ZBTB48 PATZ1 ZBTB20 EZH2 MAZ

Genomic Locations for RAMP2-AS1 Gene

Genomic Locations for RAMP2-AS1 Gene
chr17:42,753,914-42,761,257
(GRCh38/hg38)
Size:
7,344 bases
Orientation:
Minus strand
chr17:40,905,932-40,913,275
(GRCh37/hg19)

Genomic View for RAMP2-AS1 Gene

Genes around RAMP2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAMP2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAMP2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAMP2-AS1 Gene

Proteins for RAMP2-AS1 Gene

Post-translational modifications for RAMP2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RAMP2-AS1 Gene

Domains & Families for RAMP2-AS1 Gene

Gene Families for RAMP2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RAMP2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RAMP2-AS1 Gene

Function for RAMP2-AS1 Gene

Animal Model Products

miRNA for RAMP2-AS1 Gene

miRTarBase miRNAs that target RAMP2-AS1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RAMP2-AS1 Gene

Localization for RAMP2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RAMP2-AS1 Gene

Pathways & Interactions for RAMP2-AS1 Gene

SuperPathways for RAMP2-AS1 Gene

No Data Available

Interacting Proteins for RAMP2-AS1 Gene

Gene Ontology (GO) - Biological Process for RAMP2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RAMP2-AS1 Gene

Drugs & Compounds for RAMP2-AS1 Gene

No Compound Related Data Available

Transcripts for RAMP2-AS1 Gene

mRNA/cDNA for RAMP2-AS1 Gene

(8) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RAMP2-AS1 Gene

RAMP2 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RAMP2-AS1 Gene

No ASD Table

Relevant External Links for RAMP2-AS1 Gene

GeneLoc Exon Structure for
RAMP2-AS1
ECgene alternative splicing isoforms for
RAMP2-AS1

Expression for RAMP2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RAMP2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for RAMP2-AS1 Gene

This gene is overexpressed in Adipose - Subcutaneous (x5.4) and Adipose - Visceral (Omentum) (x4.8).

SOURCE GeneReport for Unigene cluster for RAMP2-AS1 Gene:

Hs.655265
genes like me logo Genes that share expression patterns with RAMP2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RAMP2-AS1 Gene

Orthologs for RAMP2-AS1 Gene

Evolution for RAMP2-AS1 Gene

ENSEMBL:
Gene Tree for RAMP2-AS1 (if available)
TreeFam:
Gene Tree for RAMP2-AS1 (if available)

No data available for Orthologs for RAMP2-AS1 Gene

Paralogs for RAMP2-AS1 Gene

No data available for Paralogs for RAMP2-AS1 Gene

Variants for RAMP2-AS1 Gene

Sequence variations from dbSNP and Humsavar for RAMP2-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000250435 -- 42,762,272(+) ACAGG(C/T)AGTTC intron-variant, upstream-variant-2KB
rs1000291767 -- 42,755,723(+) TTTTG(C/T)ATTTT intron-variant, nc-transcript-variant
rs1000671761 -- 42,754,327(+) CAATA(C/T)AGGGT intron-variant, nc-transcript-variant
rs1001171653 -- 42,756,214(+) GGATG(C/T)TCCAC intron-variant, nc-transcript-variant
rs1001296446 -- 42,757,333(+) GACAT(C/G)TTACT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RAMP2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv960109 CNV duplication 23825009
nsv833450 CNV loss 17160897
nsv1146669 OTHER inversion 26484159
esv3640613 CNV loss 21293372
esv33998 OTHER inversion 15654335
esv2715949 CNV deletion 23290073

Relevant External Links for RAMP2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RAMP2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RAMP2-AS1 Gene

Disorders for RAMP2-AS1 Gene

Relevant External Links for RAMP2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RAMP2-AS1

No disorders were found for RAMP2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAMP2-AS1 Gene

Publications for RAMP2-AS1 Gene

  1. The Potential Roles of Long Noncoding RNAs (lncRNA) in Glioblastoma Development. (PMID: 27784795) Liu S … Zhao Z (Molecular cancer therapeutics 2016) 2 3 60
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for RAMP2-AS1 Gene

Sources for RAMP2-AS1 Gene

Content
Loading form....