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Aliases for RALGAPA1P1 Gene

Aliases for RALGAPA1P1 Gene

  • Ral GTPase Activating Protein Catalytic Alpha Subunit 1 Pseudogene 1 2 3 5
  • GTPase Activating Rap/RanGAP Domain-Like 2 Pseudogene 2 3
  • GTPase Activating RANGAP Domain-Like 2 Pseudogene 2 3
  • Ral GTPase Activating Protein, Alpha Subunit 1 (Catalytic) Pseudogene 3
  • GTPase Activating RANGAP Domain-Like 2 2
  • BA235C23.1 3
  • RALGAPA1P 3
  • GARNL2P 3
  • GARNL2 3

External Ids for RALGAPA1P1 Gene

Previous HGNC Symbols for RALGAPA1P1 Gene

  • GARNL2
  • GARNL2P
  • RALGAPA1P

Summaries for RALGAPA1P1 Gene

GeneCards Summary for RALGAPA1P1 Gene

RALGAPA1P1 (Ral GTPase Activating Protein Catalytic Alpha Subunit 1 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RALGAPA1P1 Gene

Genomics for RALGAPA1P1 Gene

Regulatory Elements for RALGAPA1P1 Gene

Enhancers for RALGAPA1P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09F104763 0.9 ENCODE 12.5 -755.6 -755570 2.0 HDGF TBP CBX3 ARID4B SIN3A DMAP1 ZNF48 DNMT3B CHAMP1 GLIS2 NIPSNAP3A RALGAPA1P1 NIPSNAP3B FKTN GC09P104774
GH09F105509 1.5 FANTOM5 Ensembl ENCODE 0.4 -9.7 -9691 1.1 ZNF76 INSM2 KLF17 FEZF1 RAD21 YY1 ZNF335 ZNF366 ZNF362 ZNF654 FSD1L TMEM38B RALGAPA1P1
GH09F105506 0.8 ENCODE 0.4 -12.8 -12801 1.3 SOX13 CTCF SAP130 RARA GATA3 NR2F6 PRDM10 CREM HOMEZ GATAD2A FSD1L RALGAPA1P1
GH09F105504 1 FANTOM5 Ensembl 0.3 -15.7 -15724 0.2 TBP BACH1 RELA ZNF316 POLR2A NFE2 MAFK NFE2L2 MTA2 MAFG FSD1L TMEM38B RALGAPA1P1
GH09F105500 1 Ensembl ENCODE 0.3 -19.1 -19124 1.4 TBP MXI1 BMI1 EBF1 RELA POLR2A EED CHD2 MTA2 JUNB FSD1L FKTN RALGAPA1P1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RALGAPA1P1 on UCSC Golden Path with GeneCards custom track

Promoters for RALGAPA1P1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001911870 177 799

Genomic Location for RALGAPA1P1 Gene

Chromosome:
9
Start:
105,519,824 bp from pter
End:
105,527,319 bp from pter
Size:
7,496 bases
Orientation:
Plus strand

Genomic View for RALGAPA1P1 Gene

Genes around RALGAPA1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RALGAPA1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RALGAPA1P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RALGAPA1P1 Gene

Proteins for RALGAPA1P1 Gene

Post-translational modifications for RALGAPA1P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RALGAPA1P1 Gene

Domains & Families for RALGAPA1P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RALGAPA1P1 Gene

Function for RALGAPA1P1 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RALGAPA1P1 Gene

Localization for RALGAPA1P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RALGAPA1P1 Gene

Pathways & Interactions for RALGAPA1P1 Gene

SuperPathways for RALGAPA1P1 Gene

No Data Available

Interacting Proteins for RALGAPA1P1 Gene

Gene Ontology (GO) - Biological Process for RALGAPA1P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RALGAPA1P1 Gene

Drugs & Compounds for RALGAPA1P1 Gene

(1) Drugs for RALGAPA1P1 Gene - From: ApexBio

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
RBC8 Pharma 0

(1) ApexBio Compounds for RALGAPA1P1 Gene

Compound Action Cas Number
RBC8 361185-42-4
genes like me logo Genes that share compounds with RALGAPA1P1: view

Transcripts for RALGAPA1P1 Gene

mRNA/cDNA for RALGAPA1P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RALGAPA1P1 Gene

No ASD Table

Relevant External Links for RALGAPA1P1 Gene

GeneLoc Exon Structure for
RALGAPA1P1
ECgene alternative splicing isoforms for
RALGAPA1P1

Expression for RALGAPA1P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of RALGAPA1P1 Gene:

RALGAPA1P1
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RALGAPA1P1 Gene

Orthologs for RALGAPA1P1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RALGAPA1P1 Gene

Organism Taxonomy Gene Similarity Type Details
zebrafish
(Danio rerio)
Actinopterygii Dr.9241 34
Species where no ortholog for RALGAPA1P1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RALGAPA1P1 Gene

ENSEMBL:
Gene Tree for RALGAPA1P1 (if available)
TreeFam:
Gene Tree for RALGAPA1P1 (if available)

Paralogs for RALGAPA1P1 Gene

No data available for Paralogs for RALGAPA1P1 Gene

Variants for RALGAPA1P1 Gene

Sequence variations from dbSNP and Humsavar for RALGAPA1P1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs111328158 -- 105,526,424(+) CAGCA(A/G)CGCAG intron-variant, nc-transcript-variant
rs111406366 -- 105,525,855(+) ACTCC(A/G)TATTT intron-variant, nc-transcript-variant
rs111483469 -- 105,522,998(+) TTCAG(C/T)GCTTT intron-variant, nc-transcript-variant
rs111592316 -- 105,522,284(+) AATTT(A/G)TATAG intron-variant, nc-transcript-variant
rs111615329 -- 105,524,324(+) GATTC(C/T)CCCTT intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for RALGAPA1P1 Gene

Variant ID Type Subtype PubMed ID
esv3891705 CNV loss 25118596
nsv1053973 CNV loss 25217958
nsv615115 CNV loss 21841781
nsv982334 CNV duplication 23825009

Relevant External Links for RALGAPA1P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RALGAPA1P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RALGAPA1P1 Gene

Disorders for RALGAPA1P1 Gene

Relevant External Links for RALGAPA1P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RALGAPA1P1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RALGAPA1P1

No disorders were found for RALGAPA1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RALGAPA1P1 Gene

Publications for RALGAPA1P1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  2. Identification of a novel member of the snail/Gfi-1 repressor family, mlt 1, which is methylated and silenced in liver tumors of SV40 T antigen transgenic mice. (PMID: 11221845) Tateno M. … Hayashizaki Y. (Cancer Res. 2001) 2 64

Products for RALGAPA1P1 Gene

Sources for RALGAPA1P1 Gene

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