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Aliases & Descriptions for RALA
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| MGC48949 2 | | RAL 2, 3 |
| | | Descriptions |
|---|
| RAS-like protein A 2 | | Ras family small GTP binding protein RALA 2 | | Ras-related protein Ral-A 2 | | ras related v-ral simian leukemia viral oncogene homolog A 2 | v-ral simian leukemia viral oncogene homolog A (ras related) 2 |
|
| | Search outside databases for aliases for RALA genePrevious GC identifers: GC07P039372 GC07P039403 GC07P039436 |
Summaries for RALA(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for RALA: The product of this gene belongs to the small GTPase superfamily, Ras family of proteins. GTP-binding proteins mediate the transmembrane signaling initiated by the occupancy of certain cell surface receptors. This gene encodes a low molecular mass ras-like GTP-binding protein that shares about 50% similarity with other ras proteins. [provided by RefSeq] Gene Wiki entry for RALA |
Genomic Location for RALA
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the RALA gene 
Entrez Gene cytogenetic band: 7p15-p13 Ensembl cytogenetic band: 7p14.1 HGNC cytogenetic band: 7p22-p15RALA Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 7 GeneLoc Exon Structure GeneLoc location for GC07P039630:
(about GC identifiers)
Start:
|
39,629,687 bp from pter |
End:
|
39,714,244 bp from pter |
Size:
|
84,558 bases |
Orientation:
|
plus strand |
1 alternative location:
| Chr7+,CRA_TCAG 39,701,024-39,785,592 |
RefSeq DNA sequence:- NC_000007.12 NT_007819.16 NT_079592.2
| Proteins for RALA
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: RALA_HUMAN, P11233 (See
protein sequence)Recommended Name: Ras-related protein Ral-A precursor Size: 206 amino acids; 23567 Da
Subunit: Interacts with RALBP1 via its effector domain. Interacts with EXOC8 and EXOC2. EXOC2 and EXOC8 have overlapping binding sites and compete for RALA binding. Interacts with Clostridium exoenzyme C3. Interacts with RALGPS1
Subcellular location: Cell membrane; Lipid-anchor; Cytoplasmic side (Potential)
PDB structures from and Proteopedia :1UAD (3D)
 1ZC3 (3D)
 1ZC4 (3D)
 2A78 (3D)
 2A9K (3D)
 2BOV (3D)
 Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_005393.2
ENSEMBL proteins: ENSP00000005257
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: RALA 
2 Gene Ontology (GO) cellular component terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005622 | intracellular |
IEA | -- | | GO:0005886 | plasma membrane |
IEA | -- | About this table
Antibodies for RALA: Assays for RALA: | Protein
Domains/ Families for RALA(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P11233
ProtoNet protein and cluster: P11233 2 Blocks protein families: IPB001806 Transforming protein P21 RAS signature IPB003577 Ras small GTPase
UniProtKB/Swiss-Prot: RALA_HUMAN, P11233Similarity: Belongs to the small GTPase superfamily. Ras family | Gene Function for RALA
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005402
Applied Biosystems Silencer® siRNAs for RALA
Sigma-Aldrich siRNA for RALA  Sigma-Aldrich shRNA for RALA  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005402                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005402                                  untagged cDNA clone in CMV expression vector: NM_005402 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_005402
Genatlas biochemistry entry for RALA:simian leukemia viral (v-ral) oncogene homolog A,Ras oncogene superfamily member3 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for RALA
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
2 Sigma-Aldrich "Your Favorite Gene" Pathways for RALA (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for RALA 
5/45 Interacting proteins for RALA (P112331, 2 ENSP000000052573) via UniProtKB, MINT, and/or STRING (see all 45
)About this table
5 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for RALA(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for RALA 8 Novoseek chemical compound relationships for RALA gene
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| gdp |
62.70 |
22 |
8702675 (3), 9053849 (2), 1379346 (1), 8524240 (1) (see all 9) |
| gtp |
57.83 |
22 |
17202486 (4), 11322487 (3), 8702675 (2), 1379346 (1) (see all 7) |
| geranylgeranyl pyrophosphate |
50.64 |
3 |
8972729 (1), 16125679 (1) |
| phosphatidylinositol |
21.02 |
3 |
15263068 (1), 10419502 (1), 15208305 (1) |
| tyrosine |
5.83 |
3 |
12866021 (1), 9550702 (1), 7477381 (1) |
| oxygen |
0.00 |
1 |
16964283 (1) |
| phospholipid |
0.00 |
2 |
15980073 (1) |
| calcium |
0.00 |
29 |
11322487 (4), 12034722 (4), 9566869 (2), 10419502 (1) (see all 5) |
About this table
|
Transcripts for RALA(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005402
Sigma-Aldrich siRNA for RALA  Sigma-Aldrich shRNA for RALA  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_005402 REFSEQ mRNAs for RALA gene: NM_005402.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_005402               OriGene GFP tagged cDNA clone in CMV expression vector: NM_005402                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005402                                  untagged cDNA clone in CMV expression vector: NM_005402  Additional cDNA sequence: AF086082.1 AF493910.1 AK026850.1 AK308109.1 BC039858.1 CR600160.1 M29893.1 X15014.1 13 DOTS entries: DT.80100564 DT.100785246 DT.100656840 DT.91757843 DT.95294309 DT.121073355 DT.121073398 DT.95294307 DT.95294311 DT.100785247 DT.121073387 DT.91757845 DT.95294312 24/275 AceView cDNA sequences (see all 275
):AF086082 BQ068256 CA444080 BM821639 X15014 BE673391 F11825 BE784233 BM806998 NM_005402 BM550259 AA382990 BM992487 BU630853 AW474027 BF115263 AI283900 BI770485 AA379902 BU743277 F10291 AU132473 AI214262 F12680
highest scoring ESTs for RALA:M29893 AA045015 AA083480 AA296743 AA368261 AA371289 AA379902 AA379961 AA382990 AA382991 Unigene Cluster for RALA: V-ral simian leukemia viral oncogene homolog A (ras related) Hs.6906 [show with all ESTs]Unigene Representative Sequence: NM_005402
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000005257
|
Expression for RALA
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| RALA expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for RALA
1 / 2 / 3 8 probe-sets matching RALA gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TGTACTTATT
SOURCE GeneReport for Unigene cluster: Hs.6906
Expression variation in blood from EXPOLDB for RALA |
Orthologs for RALA
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for RALA gene from 5/12 species (see all 12
)
About this table Species with no ortholog for RALA
ENSEMBL Gene Tree for RALA | Paralogs for RALA(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for RALA gene
- RALB2
Pseudogenes
- 1 related pseudogene
|
SNPs/Variants for RALA(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for RALA (up to first 250kb)
|
Disorders & Mutations for RALA
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 179550
10 Novoseek disease relationships for RALA gene
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| bladder carcinoma |
24.30 |
1 |
16488989 (1) |
| pancreatic carcinoma |
21.34 |
2 |
17174914 (1), 16757353 (1) |
| bladder cancer |
15.73 |
12 |
17606711 (6), 17496927 (2) |
| cancer |
14.70 |
11 |
16103060 (3), 15953551 (1), 17875936 (1), 17496927 (1) (see all 8) |
| prostate carcinoma |
11.37 |
1 |
16964283 (1) |
| pheochromocytoma |
9.28 |
3 |
17202486 (1), 17344481 (1) |
| pancreatic cancer |
2.88 |
5 |
17174914 (3), 15950903 (1) |
| breast cancer |
0.00 |
2 |
12386818 (1), 10896938 (1) |
| tumors |
0.00 |
15 |
10467419 (2), 17174914 (1), 17606711 (1), 15950903 (1) (see all 8) |
| metastasis |
0.00 |
4 |
17174914 (1), 17606711 (1), 16103060 (1) |
About this table
|
Medical News for RALA(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for RALA (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/142 PubMed articles for RALA gene (see all 142
):- Ral GTPases regulate exocyst assembly through dual subunit interactions. (PubMed id 14525976)1, 3, 4 Moskalenko S.... White M.A. (2003)
- Molecular recognition of an ADP-ribosylating Clostridium botulinum C3 exoenzyme by RalA GTPase. (PubMed id 15809419)3, 4 Holbourn K.P.... Acharya K.R. (2005)
- Exo84 and Sec5 are competitive regulatory Sec6/8 effectors to the RalA GTPase. (PubMed id 15920473)3, 4 Jin R....Brunger A.T. (2005)
- Crystal structure of the C3bot-RalA complex reveals a novel type of action of a bacterial exoenzyme. (PubMed id 16177825)3, 4 Pautsch A.... Aktories K. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- The DNA sequence of human chromosome 7. (PubMed id 12853948)3, 4 Hillier L.W.... Wilson R.K. (2003)
- Bridging Ral GTPase to Rho pathways. RLIP76, a Ral effector with CDC42/Rac GTPase-activating protein activity. (PubMed id 7673236)3, 4 Jullien-Flores V.... Camonis J.H. (1995)
- Carboxyl-terminal isoprenylation of ras-related GTP-binding proteins encoded by rac1, rac2, and ralA. (PubMed id 1903399)3, 4 Kinsella B.T.... Maltese W.A. (1991)
- Coding sequences of human ralA and ralB cDNAs. (PubMed id 2662142)3, 4 Chardin P. and Tavitian A. (1989)
- Identification of the ral and rac1 gene products, low molecular mass GTP-binding proteins from human platelets. (PubMed id 2550440)3, 4 Polakis P.G....Snyderman R. (1989)
|
Search for RALA
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing RALA
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing RALA
(According to HUGE)
About This Section
| -- |
Specialized Databases showing RALA(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for RALA(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for RALA:

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Incremental update: 13 Oct 2009
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