Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RAI1-AS1 Gene

Subcategory (RNA class) for RAI1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RAI1-AS1 Gene

  • RAI1 Antisense RNA 1 2 3 5
  • RAI1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for RAI1-AS1 Gene

Previous GeneCards Identifiers for RAI1-AS1 Gene

  • GC17M017663

Summaries for RAI1-AS1 Gene

GeneCards Summary for RAI1-AS1 Gene

RAI1-AS1 (RAI1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAI1-AS1 Gene

Genomics for RAI1-AS1 Gene

Regulatory Elements for RAI1-AS1 Gene

Enhancers for RAI1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G017800 0.6 dbSUPER 12.4 -30.4 -30384 1.8 CTCF PKNOX1 POLR2A SCRT2 GABPA NR2C2 SMCR5 RAI1-AS1 RAI1 PIR43249 PIR58709
GH17G017773 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -3.4 -3418 2.0 PTBP1 SIN3A NFXL1 RAD21 RARA ZNF121 ZNF366 FOS IKZF2 SMARCA5 RAI1-AS1 ENSG00000264167
GH17G017764 1.4 Ensembl ENCODE dbSUPER 0.7 +2.9 2857 6.5 PKNOX1 KLF17 GLIS2 SCRT2 IKZF2 EGR2 ZNF263 USF2 REST ZNF623 RAI1-AS1 PIR55057
GH17G017748 2 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +17.0 16986 10.3 HDGF PKNOX1 ARNT WRNIP1 ARID4B SIN3A DMAP1 ZBTB7B YY1 ZNF143 ZNF286B USP32P2 ENSG00000264885 SMCR5 ENSG00000273018 LOC100419436 MPRIP-AS1 ENSG00000260647 TOM1L2 PEMT
GH17G017772 0.8 dbSUPER 0.7 -1.6 -1631 0.7 ZKSCAN1 ZFHX2 ZNF366 ZBTB48 EGR1 SCRT2 PRDM10 ZNF600 NFE2L2 ZBTB20 ENSG00000264885 FLCN RAI1-AS1 ENSG00000264167
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RAI1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for RAI1-AS1 Gene

Chromosome:
17
Start:
17,759,154 bp from pter
End:
17,770,821 bp from pter
Size:
11,668 bases
Orientation:
Minus strand

Genomic View for RAI1-AS1 Gene

Genes around RAI1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAI1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAI1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAI1-AS1 Gene

Proteins for RAI1-AS1 Gene

Post-translational modifications for RAI1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RAI1-AS1 Gene

Domains & Families for RAI1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RAI1-AS1 Gene

Function for RAI1-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RAI1-AS1 Gene

Localization for RAI1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RAI1-AS1 Gene

Pathways & Interactions for RAI1-AS1 Gene

SuperPathways for RAI1-AS1 Gene

No Data Available

Interacting Proteins for RAI1-AS1 Gene

Gene Ontology (GO) - Biological Process for RAI1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RAI1-AS1 Gene

Drugs & Compounds for RAI1-AS1 Gene

No Compound Related Data Available

Transcripts for RAI1-AS1 Gene

mRNA/cDNA for RAI1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RAI1-AS1 Gene

No ASD Table

Relevant External Links for RAI1-AS1 Gene

GeneLoc Exon Structure for
RAI1-AS1
ECgene alternative splicing isoforms for
RAI1-AS1

Expression for RAI1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RAI1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for RAI1-AS1 Gene

This gene is overexpressed in Muscle - Skeletal (x13.2).
genes like me logo Genes that share expression patterns with RAI1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RAI1-AS1 Gene

Orthologs for RAI1-AS1 Gene

Evolution for RAI1-AS1 Gene

ENSEMBL:
Gene Tree for RAI1-AS1 (if available)
TreeFam:
Gene Tree for RAI1-AS1 (if available)

No data available for Orthologs for RAI1-AS1 Gene

Paralogs for RAI1-AS1 Gene

No data available for Paralogs for RAI1-AS1 Gene

Variants for RAI1-AS1 Gene

Sequence variations from dbSNP and Humsavar for RAI1-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000147080 -- 17,764,748(+) TGCCT(C/G)CCACC intron-variant
rs1000633513 -- 17,764,905(+) TTACT(A/G)TTTAT intron-variant
rs1000644264 -- 17,759,714(+) GTGCT(G/T)GTCTT intron-variant
rs1000763872 -- 17,766,093(+) ACTCA(C/T)ATTGT intron-variant, nc-transcript-variant
rs1000933340 -- 17,758,732(+) CGAGG(A/T)GCATA intron-variant, downstream-variant-500B

Relevant External Links for RAI1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RAI1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RAI1-AS1 Gene

Disorders for RAI1-AS1 Gene

Relevant External Links for RAI1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RAI1-AS1

No disorders were found for RAI1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAI1-AS1 Gene

Publications for RAI1-AS1 Gene

No publications were found for RAI1-AS1 Gene.

Products for RAI1-AS1 Gene

Sources for RAI1-AS1 Gene

Content
Loading form....