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RAET1G Gene

protein-coding   GIFtS: 50
GCID: GC06M150238

Retinoic Acid Early Transcript 1G

(Previous name: retinoic acid early transcript 1G pseudogene)
  Search for RAET1G
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Retinoic Acid Early Transcript 1G1 2
Retinoic Acid Early Transcript 1G Pseudogene1 2
ULBP52
Retinoic Acid Early Transcript 1G Protein2

External Ids:    HGNC: 167951   Entrez Gene: 3530912   Ensembl: ENSG000002037227   OMIM: 6092445   UniProtKB: Q6H3X33   

Export aliases for RAET1G gene to outside databases

Previous GC identifers: GC06U900331 GC06M150323 GC06M150279 GC06M147803


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for RAET1G Gene:
Members of the RAET1 family, such as RAET1G, are major histocompatibility complex (MHC) class I-related genes
located within a 180-kb cluster on chromosome 6q24.2-q25.3. RAET1 proteins contain MHC class I-like alpha-1 and
alpha-2 domains. RAET1E (MIM 609243) and RAET1G differ from the other RAET1 proteins (e.g., RAET1I, or ULBP1; MIM
605697) in that they have type I membrane-spanning sequences at their C termini rather than
glycosylphosphatidylinositol anchor sequences. (Radosavljevic et al., 2002 (PubMed 11827464)).(supplied by OMIM,
Mar 2008)

GeneCards Summary for RAET1G Gene:
RAET1G (retinoic acid early transcript 1G) is a protein-coding gene. GO annotations related to this gene include antigen binding and natural killer cell lectin-like receptor binding. An important paralog of this gene is ULBP1.

UniProtKB/Swiss-Prot: RET1G_HUMAN, Q6H3X3
Function: Acts as a ligand for the NKG2D receptor and mediates NK cell cytotoxicity via the receptor




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000006.12  NT_025741.16  NC_018917.2  
Regulatory elements:
   Search for regulatory transcription factor binding sites for RAET1G
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidRAET1G promoter sequence
   Search Chromatin IP Primers for RAET1G

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat RAET1G


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 6q24.1-q25.1   Ensembl cytogenetic band:  6q25.1   HGNC cytogenetic band: 6q24.1-25.1

RAET1G Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RAET1G gene location

GeneLoc information about chromosome 6         GeneLoc Exon Structure

GeneLoc location for GC06M150238:  view genomic region     (about GC identifiers)

Start:
150,238,014 bp from pter      End:
150,244,257 bp from pter
Size:
6,244 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: RET1G_HUMAN, Q6H3X3 (See protein sequence)
Recommended Name: Retinoic acid early transcript 1G protein precursor  
Size: 334 amino acids; 37106 Da
Subunit: Binds to KLRK1/NKG2D. Also binds the CMV glycoprotein UL16
Secondary accessions: Q6H3X2
Alternative splicing: 2 isoforms:  Q6H3X3-1   Q6H3X3-2   

Explore the universe of human proteins at neXtProt for RAET1G: NX_Q6H3X3

Explore proteomics data for RAET1G at MOPED

Post-translational modifications: 

  • Glycosylation2 at Asn82

  • See RAET1G Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_001001788.2  
    ENSEMBL proteins: 
     ENSP00000356329   ENSP00000356330   ENSP00000417503  

    RAET1G Human Recombinant Protein Products:

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    3 InterPro protein domains:
     IPR011162 MHC_I/II-like_Ag-recog
     IPR011161 MHC_I-like_Ag-recog
     IPR001039 MHC_I_a_a1/a2

    Graphical View of Domain Structure for InterPro Entry Q6H3X3

    ProtoNet protein and cluster: Q6H3X3

    1 Blocks protein domain: IPB001039 MHC class I signature

    UniProtKB/Swiss-Prot: RET1G_HUMAN, Q6H3X3
    Similarity: Belongs to the MHC class I family


    RAET1G for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: RET1G_HUMAN, Q6H3X3
    Function: Acts as a ligand for the NKG2D receptor and mediates NK cell cytotoxicity via the receptor

         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003823antigen binding IBA--
    GO:0046703natural killer cell lectin-like receptor binding IPI15240696
         
    RAET1G for ontologies           About GeneDecksing


    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for RAET1G
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    RET1G_HUMAN, Q6H3X3: Cell membrane; Single-pass type I membrane protein
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    plasma membrane5
    extracellular1
    lysosome1

    Gene Ontology (GO): 3 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005886plasma membrane NAS15240696
    GO:0016020membrane ----
    GO:0016021integral component of membrane IEA--

    RAET1G for ontologies           About GeneDecksing


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    SuperPaths for RAET1G About                                                                                                See pathways by source

    SuperPathContained pathways About
    1Immune response Role of DAP12 receptors in NK cells
    Natural killer cell mediated cytotoxicity0.31

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways




    1 Kegg Pathway  (Kegg details for RAET1G):
        Natural killer cell mediated cytotoxicity


    RAET1G for pathways           About GeneDecksing

        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for RAET1G
    Interactions:

        Search GeneGlobe Interaction Network for RAET1G

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    Selected Interacting proteins for RAET1G (Q6H3X33 ENSP000003563294) via UniProtKB, MINT, STRING, and/or I2D (see all 68)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    KLRK1P267183, ENSP000002406184I2D: score=2 STRING: ENSP00000240618
    ULBP1Q9BZM63, ENSP000002297084I2D: score=1 STRING: ENSP00000229708
    AZGP1ENSP000002924014STRING: ENSP00000292401
    B2MENSP000003408584STRING: ENSP00000340858
    CD1AENSP000002894294STRING: ENSP00000289429
    About this table

    Gene Ontology (GO): 3 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006955immune response ----
    GO:0019882antigen processing and presentation IBA--
    GO:0042267natural killer cell mediated cytotoxicity IDA15240696

    RAET1G for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for RAET1G (RET1G)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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    REFSEQ mRNAs for RAET1G gene: 
    NM_001001788.2  

    Unigene Cluster for RAET1G:

    Retinoic acid early transcript 1G
    Hs.558792  [show with all ESTs]
    Unigene Representative Sequence: AY172579
    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000367360(uc010kii.1 uc003qnm.2) ENST00000367361 ENST00000479265

    miRNA
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      QuantiFast Probe-based Assays in human, mouse, rat RAET1G

    Additional mRNA sequence: 

    AK310157.1 AY172579.1 BC096719.1 BC098152.1 

    3 DOTS entries:

    DT.91805455  DT.102838746  DT.121383078 

    8 AceView cDNA sequences:

    AY172580 AY172579 AW510737 AA583860 BF513861 BE711112 CD698506 BF836799 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    RAET1G expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GCCACCACCC
    RAET1G Expression
    About this image

    RAET1G Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    RAET1G Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.558792

    UniProtKB/Swiss-Prot: RET1G_HUMAN, Q6H3X3
    Tissue specificity: Highly expressed in colon and in a number of tumor cell lines

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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RAET1G

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of mammals.

    Orthologs for RAET1G gene from Selected species (see all 3)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    dog
    (Canis familiaris)
    Mammalia --
    --
    33(a)
    1 → many
    1(40635694-40637301)


    ENSEMBL Gene Tree for RAET1G (if available)
    TreeFam Gene Tree for RAET1G (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for RAET1G gene
    ULBP12  ULBP32  RAET1L2  RAET1E2  ULBP22  
    11 SIMAP similar genes for RAET1G using alignment to 7 protein entries:     RET1G_HUMAN (see all proteins):
    RAET1H    RAET1L    ULBP2    ULBP1    ULBP3    RAET-1E
    RAET1E    HLA-Cw    HLA C*    HLA-A*03    HLA-Cw*15P

    RAET1G for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for RAET1G (see all 118)    About this table    
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 6 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1866080821,2
    --150241176(+) TGTCCC/GCAGAC 1 -- int10--------
    rs1487625591,2
    --150241186(+) CATGTC/GCCACT 1 -- int10--------
    rs753535791,2
    C,F--150241209(+) ACATCG/AGTCAA 1 -- int11Minor allele frequency- A:0.03NA 120
    rs1423585901,2
    C--150241327(+) GTGGGA/GGCTGC 1 -- int10--------
    rs1117694331,2
    C,F--150241364(+) ACGGAG/CTGAGG 1 -- int12Minor allele frequency- C:0.04NA WA 120
    rs1468107261,2
    C--150241368(+) AGTGAG/TGATGG 1 -- int10--------
    rs1163531071,2
    C,F--150241385(+) GTTGGA/GTAAAG 1 -- int11Minor allele frequency- G:0.02WA 118
    rs558722511,2
    C,F--150241452(+) GTGCTC/GATCTA 1 -- int12Minor allele frequency- G:0.08WA 120
    rs1405369941,2
    C--150241717(+) GGGATG/TCCTAT 1 -- int10--------
    rs1907331771,2
    C--150241743(+) TTGGGG/TGTAGG 1 -- int10--------

    HapMap Linkage Disequilibrium report for RAET1G (150238014 - 150244257 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 4 variations for RAET1G:    About this table    
    Variant IDTypeSubtypePubMed ID
    esv2732866CNV Deletion23290073
    nsv886764CNV Loss21882294
    nsv886765CNV Gain21882294
    nsv517022CNV Gain+Loss19592680

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing RAET1G
    DNA2.0 Custom Variant and Variant Library Synthesis for RAET1G

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 609244    OMIM disorders: --


    RAET1G for disorders           About GeneDecksing

    Genetic Association Database (GAD): RAET1G
    Human Genome Epidemiology (HuGE) Navigator: RAET1G (3 documents)

    Export disorders for RAET1G gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for RAET1G gene, integrated from 10 sources (see all 12):
    (articles sorted by number of sources associating them with RAET1G)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Two human ULBP/RAET1 molecules with transmembrane regions are ligands for NKG2D. (PubMed id 15240696)1, 2, 3, 9 Bacon L.... Trowsdale J. (J. Immunol. 2004)
    2. Polymorphisms of NKG2D ligands: diverse RAET1/ULBP genes in northeastern Thais. (PubMed id 19688209)1, 4, 9 Romphruk A.V.... Leelayuwat C. (Immunogenetics 2009)
    3. Single nucleotide polymorphism analysis of the NKG2D ligand cluster on the long arm of chromosome 6: Extensive polymorphisms and evidence of diversity between human populations. (PubMed id 20219610)1, 4, 9 Antoun A....Briggs D.C. (Hum. Immunol. 2010)
    4. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)1, 4 Rose J.E....Uhl G.R. (Mol. Med. 2010)
    5. A cluster of ten novel MHC class I related genes on human chromosome 6q24.2-q25.3. (PubMed id 11827464)1, 3 Radosavljevic M.... Bahram S. (Genomics 2002)
    6. Differential NKG2D binding to highly related human NKG2D ligands ULBP2 and RAET1G is determined by a single amino acid in the alpha2 domain. (PubMed id 19424970)1, 9 Wittenbrink M....Steinle A. (Eur. J. Immunol. 2009)
    7. Post-translational modification of the NKG2D ligand RAET1G leads to cell surface expression of a glycosylphosphatidylinositol-linked isoform. (PubMed id 20304922)1, 9 Ohashi M....Trowsdale J. (J. Biol. Chem. 2010)
    8. Cellular expression, trafficking, and function of two isoforms of human ULBP5/RAET1G. (PubMed id 19223974)1 Eagle R.A....Trowsdale J. (PLoS ONE 2009)
    9. Mass-spectrometric identification and relative quantification of N- linked cell surface glycoproteins. (PubMed id 19349973)2 Wollscheid B.... Watts J.D. (Nat. Biotechnol. 2009)
    10. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 353091 HGNC: 16795 AceView: RAET1G Ensembl:ENSG00000203722 euGenes: HUgn353091
    ECgene: RAET1G Kegg: 353091 H-InvDB: RAET1G

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for RAET1G Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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